View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5585_low_34 (Length: 238)

Name: NF5585_low_34
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5585_low_34
NF5585_low_34
[»] chr4 (4 HSPs)
chr4 (13-220)||(39509832-39510039)
chr4 (13-213)||(39542904-39543104)
chr4 (13-213)||(39574739-39574939)
chr4 (13-213)||(39579272-39579472)
[»] chr1 (1 HSPs)
chr1 (13-68)||(35904669-35904724)
[»] chr6 (1 HSPs)
chr6 (87-169)||(17349860-17349942)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 39510039 - 39509832
Alignment:
Q  13 gaagcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcacaaaggggcagctggtggtatcattcaccgcgatgtaaaatccaca 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| || |||||     
T  39510039 gaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagcagctggtggaatcattcaccgcgatgtgaagtccact 39509940  T
Q  113 aacatattgcttgatgaacatcttgttgctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcaacacaggtgtta 212  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39509939 aacatattgcttgatgagcatcttgtagctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcagcacaggtgtta 39509840  T
Q  213 agggaact 220  Q
    ||||||||    
T  39509839 agggaact 39509832  T

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Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 39543104 - 39542904
Alignment:
Q  13 gaagcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcacaaaggggcagctggtggtatcattcaccgcgatgtaaaatccaca 112  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | ||||||||| || |||||||| || || ||||||||     
T  39543104 gaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagctggtggaataattcaccgtgacgtgaaatccact 39543005  T
Q  113 aacatattgcttgatgaacatcttgttgctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcaacacaggtgtta 212  Q
    || ||||||||||||||  ||||||| ||||||||||||||||||||||||||||| || |||||||||||| | ||||||||||||| |||| ||||||    
T  39543004 aatatattgcttgatgagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatgaacattcttatgtcagcacacgtgtta 39542905  T
Q  213 a 213  Q
    |    
T  39542904 a 39542904  T

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Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 39574939 - 39574739
Alignment:
Q  13 gaagcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcacaaaggggcagctggtggtatcattcaccgcgatgtaaaatccaca 112  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| ||||| || || ||||| ||||| ||||||||     
T  39574939 gaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagccggtggaataatccaccgtgatgtgaaatccact 39574840  T
Q  113 aacatattgcttgatgaacatcttgttgctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcaacacaggtgtta 212  Q
    || ||||||||||| ||  ||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||| ||||||    
T  39574839 aatatattgcttgacgagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatcaacattcttatgtcagcacatgtgtta 39574740  T
Q  213 a 213  Q
    |    
T  39574739 a 39574739  T

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Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 39579472 - 39579272
Alignment:
Q  13 gaagcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcacaaaggggcagctggtggtatcattcaccgcgatgtaaaatccaca 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |  |||||||| || || ||||| ||||| ||||||||     
T  39579472 gaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagttgctggtggaataatccaccgtgatgtgaaatccact 39579373  T
Q  113 aacatattgcttgatgaacatcttgttgctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcaacacaggtgtta 212  Q
    || ||||||||||||||  |||||||||||||||||||||||||||| |||||||   | |||||||||||||| ||||||||||| | |||||||||||    
T  39579372 aatatattgcttgatgagaatcttgttgctaaagttgctgattttggcctttcaaaggcaggtcctcttgatcaacattcttatgtgagcacaggtgtta 39579273  T
Q  213 a 213  Q
    |    
T  39579272 a 39579272  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 35904724 - 35904669
Alignment:
Q  13 gaagcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcaca 68  Q
    |||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||    
T  35904724 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca 35904669  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 17349860 - 17349942
Alignment:
Q  87 tcattcaccgcgatgtaaaatccacaaacatattgcttgatgaacatcttgttgctaaagttgctgattttggtctttcaaga 169  Q
    |||| ||||||||  | |||||||| ||||| ||||| || ||| ||| ||||||||| || |||||||| ||||||||||||    
T  17349860 tcatccaccgcgacattaaatccaccaacattttgctcgacgaagatcatgttgctaaggtggctgatttcggtctttcaaga 17349942  T

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