View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_low_35 (Length: 238)
Name: NF5585_low_35
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31856447 - 31856230
Alignment:
| Q |
1 |
tttatgaatgcaaaatcaaataatgtgcaaagaaatttcattatcacacatgtacacaacgttggaataagactttctattcaagaaaaacagaatgtga |
100 |
Q |
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| T |
31856447 |
tttatgaatgcaaaatcaaataatgtgcaaagaaatttcattatcacacatgtacacaacgttggaataagactttctattcaagaaaaacagaatgtga |
31856348 |
T |
|
| Q |
101 |
tactttggtaaaatcattatgtgttattagatgatataggacacttaatttatttatttgcagaatccacatattattgagctctttgcaattagtaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31856347 |
tactttggtaaaatcattatgtgttattagatgatataggacacttaattt----atttgcagaatccacatattattgagctctttgcaattagtaata |
31856252 |
T |
|
| Q |
201 |
gaatataacaatcattattata |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
31856251 |
gaatataacaatcattattata |
31856230 |
T |
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