View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_low_38 (Length: 221)
Name: NF5585_low_38
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_38 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7138679 - 7138460
Alignment:
| Q |
1 |
agtagatatgtgtatatttttgtggcacttgttaaactcatgagatatttaccatcaaatataatatggtatattgtggatataatatggtacattgtgg |
100 |
Q |
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| T |
7138679 |
agtagatatgtgtatatttttgtggcacttattaaactcatgagatatttaccgtcaaatataatatggtatattgtggatataatatggtacattgtgg |
7138580 |
T |
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| Q |
101 |
attactcattgtcttaaaataatacaatgatgttttgaaatgaaaatactcttttcgattacatttataagtaatttannnnnnncagattcattaaata |
200 |
Q |
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| T |
7138579 |
attactcattgtcttaaaataatacaatgatgttttgaaatgaaaatactctcttcgattacatttataagtaactta-ttttttcagattcattaaata |
7138481 |
T |
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| Q |
201 |
attgatgtatttagactatat |
221 |
Q |
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| T |
7138480 |
actgatgtatttagactatat |
7138460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 53835046 - 53835011
Alignment:
| Q |
13 |
tatatttttgtggcacttgttaaactcatgagatat |
48 |
Q |
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| T |
53835046 |
tatatttttgtggcacttgttaaactaatgagatat |
53835011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 26708206 - 26708172
Alignment:
| Q |
13 |
tatatttttgtggcacttgttaaactcatgagata |
47 |
Q |
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| T |
26708206 |
tatatttttgtggcacttgttaaactcatgagata |
26708172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 26977940 - 26977906
Alignment:
| Q |
13 |
tatatttttgtggcacttgttaaactcatgagata |
47 |
Q |
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| T |
26977940 |
tatatttttgtggcacttgttaaactcatgagata |
26977906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 24188468 - 24188503
Alignment:
| Q |
13 |
tatatttttgtggcacttgttaaactcatgagatat |
48 |
Q |
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| T |
24188468 |
tatatttttgtggcacttgataaactcatgagatat |
24188503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 33057906 - 33057940
Alignment:
| Q |
187 |
agattcattaaataattgatgtatttagactatat |
221 |
Q |
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| T |
33057906 |
agattcattaaataattgatgtatttggactatat |
33057940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 33059244 - 33059277
Alignment:
| Q |
186 |
cagattcattaaataattgatgtatttagactat |
219 |
Q |
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| T |
33059244 |
cagattcattaaataattgatgtatttggactat |
33059277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 10945572 - 10945532
Alignment:
| Q |
94 |
attgtggattactcattgtcttaaaataatacaatgatgtt |
134 |
Q |
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| T |
10945572 |
attgtggattatccattgtattaaaataatacaatgatgtt |
10945532 |
T |
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