View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5585_low_39 (Length: 220)
Name: NF5585_low_39
Description: NF5585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5585_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 31069112 - 31069309
Alignment:
| Q |
11 |
atccgcaggtgtgatgaatctatgaggaactccatagtgaatctataggccgaccgacatgtatatatttcatcgttgctgaatttctacactagtgcat |
110 |
Q |
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| T |
31069112 |
atccgcaggtgagatgaatcaatgaggaactccatagtgaatctataggccgaccgaactgtatatatttcatccttgctcaatttctacaccagtgcat |
31069211 |
T |
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| Q |
111 |
cttcattattaatatgcataataggtattctttttcactc--tatatgtcatgctgttcatcac----attccgaatcaagtccatcacgacactcct |
202 |
Q |
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| T |
31069212 |
cttcattattaatatgcataataggtgttctttttcactctatatatgtcatgttgttcatcacatatattccgaatcaagtccatcacaacactcct |
31069309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 31055283 - 31055380
Alignment:
| Q |
15 |
gcaggtgtgatgaatctatgaggaactccatagtgaatctataggccgaccgacatgtatatatttcatcgttgctgaatttctacactagtgcatct |
112 |
Q |
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| T |
31055283 |
gcaggtgtgatgaatctatgagggactccatagtgaatctataggccgaccgagctgtatattttctatccttgctggatttctacaccagtccatct |
31055380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 31042242 - 31042351
Alignment:
| Q |
72 |
tatatatttcatcgttgctgaatttctacactagtgcatcttcattattaatatgcataataggtattctt-tttcactctatatgtcatgct-gttcat |
169 |
Q |
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| T |
31042242 |
tatattttccatccttgctgaatttctacaccagtgcatcttcattattaatttgcatgataggcattcttgtcacactatatatgtcatgctggttcat |
31042341 |
T |
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| Q |
170 |
cacattccga |
179 |
Q |
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| T |
31042342 |
cacattccga |
31042351 |
T |
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