View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5586-Insertion-2 (Length: 1190)

Name: NF5586-Insertion-2
Description: NF5586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5586-Insertion-2
NF5586-Insertion-2
[»] chr1 (3 HSPs)
chr1 (335-952)||(15593906-15594523)
chr1 (454-862)||(4679353-4679758)
chr1 (29-99)||(16007252-16007322)
[»] chr7 (15 HSPs)
chr7 (349-870)||(8586400-8586921)
chr7 (464-862)||(8615676-8616071)
chr7 (454-724)||(3146363-3146633)
chr7 (356-559)||(8653708-8653911)
chr7 (428-559)||(8666680-8666811)
chr7 (454-669)||(13334167-13334382)
chr7 (607-724)||(8645976-8646093)
chr7 (359-669)||(10495078-10495388)
chr7 (454-555)||(17259498-17259599)
chr7 (607-718)||(8640653-8640764)
chr7 (359-403)||(13334072-13334116)
chr7 (356-403)||(3146684-3146731)
chr7 (462-557)||(6788775-6788870)
chr7 (798-863)||(8658323-8658388)
chr7 (454-555)||(17267201-17267302)
[»] chr2 (3 HSPs)
chr2 (454-870)||(16662797-16663210)
chr2 (465-559)||(16658333-16658427)
chr2 (510-559)||(12246267-12246316)
[»] chr4 (2 HSPs)
chr4 (470-783)||(30774289-30774602)
chr4 (462-516)||(35131763-35131817)
[»] chr8 (2 HSPs)
chr8 (609-718)||(43743918-43744027)
chr8 (612-722)||(43445783-43445894)
[»] chr5 (1 HSPs)
chr5 (609-697)||(28219041-28219129)


Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 335 - 952
Target Start/End: Complemental strand, 15594523 - 15593906
Alignment:
Q  335 caagccaatgtgaaaattcaggtttatgagggtgagagagcaagaactagtgacaataattttcttggtatgttgactctttcttgcacttcgggtcccc 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15594523 caagccaatgtgaaaattcaggtttatgagggtgagagagcaagagctagtgacaataatttgcttggtatgttgactctttcttgcacttcgggtcccc 15594424  T
Q  435 gtggccagacctttgaaagatgctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaat 534  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594423 gtggccagacctttgaaggatgctttgctatcgatgaaaatgctatcctgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaat 15594324  T
Q  535 aaccaatgacaaagaaaggttgtcagcatatgaaattnnnnnnntgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcg 634  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594323 aaccaatgacaaagaaaggttgtcagcatatgaaattaaaaaaatgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcg 15594224  T
Q  635 gaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaaga 734  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594223 gaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaaga 15594124  T
Q  735 taaatggtgcaattacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttcttgagggtaatctgaaggagctcgagag 834  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15594123 tcaatggtgcaattacagtggctacaaatttgcttgataagaagaataaccagcataatgaagtagatgttcttgagggtaatttgaaggagctcgagag 15594024  T
Q  835 catgttcgaaaaccttgtagtcaagactgactagttatattcttctttgtttagcataacaaacatttaggttgattatcattatctaaaagtattgatg 934  Q
    ||||||||||||||||||||||||||||| |||||| || ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  15594023 catgttcgaaaaccttgtagtcaagactggctagttttactcttctttgttcagcacaacaaacatttaggttgattatcattatcaaaaagtattgatg 15593924  T
Q  935 tttatgatgaaatctgca 952  Q
    ||||||||||||| ||||    
T  15593923 tttatgatgaaatttgca 15593906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 454 - 862
Target Start/End: Original strand, 4679353 - 4679758
Alignment:
Q  454 atgctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaagg 553  Q
    |||||||||||| |||| |||||| | | | ||||||||||  || ||||  || || || ||||| ||| ||||||| ||||||||||| |||||||||    
T  4679353 atgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatgaaaaagaaagg 4679452  T
Q  554 ttgtcagcatatgaaattnnnnnnntgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattag 653  Q
    ||| || ||| | || ||       ||||| ||||||| ||| ||||||| |  |||||| |||||||  ||||||||||  ||||||||| |||||| |    
T  4679453 ttgacaacatttcaagttaaaaaactgattgaagaagctgagaaatatcgcgaggaagataagaaatttttaaggaaggctaaggtaatgagtgcattgg 4679552  T
Q  654 atgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaagataaatggtgcaattacagt 753  Q
    |    |||||||||||  | |  |||||| | ||||| |||||||| || ||||| ||||||| | | |||  |  |||||| || | ||||||||||||    
T  4679553 aattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacgatgcaattacagt 4679652  T
Q  754 ggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgta 853  Q
    |||  | || |||||||||||||| ||  | |||   || ||| ||||||||||||||| | ||||||||||| | ||||||||||| ||||| |||| |    
T  4679653 ggccaccaacttgcttgataagaataacgaacag---aaagaaatagatgttcttgaggatcatctgaaggagttggagagcatgttggaaaagcttgaa 4679749  T
Q  854 gtcaagact 862  Q
    |||||||||    
T  4679750 gtcaagact 4679758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 16007252 - 16007322
Alignment:
Q  29 ccatttatgacagcaaggccggtgcctcatcaaacgagcttctacacaaagtctaaatttagattcagatg 99  Q
    |||||||||||||||||| | ||| |||||||||| ||  ||| ||||||||||| |||||||||||||||    
T  16007252 ccatttatgacagcaaggtcagtgtctcatcaaacaagtctcttcacaaagtctacatttagattcagatg 16007322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 7e-80; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 7e-80
Query Start/End: Original strand, 349 - 870
Target Start/End: Original strand, 8586400 - 8586921
Alignment:
Q  349 aattcaggtttatgagggtgagagagcaagaactagtgacaataattttcttggtatgttgactctttcttgcacttcgggt---ccccgtggccagacc 445  Q
    |||| |||||||||||||||||||||||||| |||||||||| ||| | |||||  | || | |||||| |||    |||||   || ||||| ||  ||    
T  8586400 aattaaggtttatgagggtgagagagcaagagctagtgacaacaatctgcttggcttttttaatctttcgtgcgtcccgggtgctcctcgtgggcatccc 8586499  T
Q  446 tttgaaagatgctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgaca 545  Q
    |||||   ||||||  | |||||||||||||||||| | |||||||||| |||||||| |||| |||||||||||||||| || || |||||||||||||    
T  8586500 tttgaggtatgcttcaccatcgatgaaaatggtatcctaactgtttctgcgaaggaaatatcctctggcaatacaaacgaaataacgataaccaatgaca 8586599  T
Q  546 aagaaaggttgtcagcatatgaaattnnnnnnntgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaa 645  Q
    |||||||||| || ||  ||||||||       ||||||||||||| ||||  || |  ||||| ||| |||||||||||||||||||  ||||||||||    
T  8586600 aagaaaggttatcggctgatgaaattaaaagactgattcaagaagcagaggtgtacctcgctgaggatcagaaattcctaaggaaggctaaggtaatgaa 8586699  T
Q  646 tgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaagataaatggtgca 745  Q
    | |||||||||| |||||||||||||| || |||||||| |||||||||||| | ||| ||||   ||||||| || |||||| |||||| |||  ||||    
T  8586700 ttcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaactaaagtgctcttctcaaaaagttaaaaagatcaatcatgca 8586799  T
Q  746 attacagtggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaa 845  Q
    |||||| ||||| ||||||||||||||   |||||| ||||| | |||||  |||||||||||| || | ||||||||||||| ||||||||||| |||     
T  8586800 attacaatggctacaaatttgcttgat---aagaataaccaggagaatgacatagatgttcttgtggatcatctgaaggagcttgagagcatgttggaag 8586896  T
Q  846 accttgtagtcaagactgactagtt 870  Q
    ||||| | ||||||| || ||||||    
T  8586897 accttttggtcaagagtggctagtt 8586921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 464 - 862
Target Start/End: Complemental strand, 8616071 - 8615676
Alignment:
Q  464 atcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaaggttgtcagcat 563  Q
    ||||| || ||||||||| | ||||| |||| |||||||| ||| |||||||||||||| || || || ||||||||||||||||||||||| || ||      
T  8616071 atcgacgataatggtatccttactgtatctgcgaaggaaaaatctactggcaatacaaatgaaataacgataaccaatgacaaagaaaggttatcggctg 8615972  T
Q  564 atgaaattnnnnnnntgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgt 663  Q
    ||||||||       ||||||||||||| ||||| || || ||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||  |    
T  8615971 atgaaattaaaaaactgattcaagaagcagaggagtaccgcgctgaagatgaaaaattcctaaggaaggccaaggtaatgaatgaattagatgactgcat 8615872  T
Q  664 ttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaat 763  Q
    |||||||||||| |||||||| ||||||||||||||    ||||| || || ||| || |||||  ||| || ||   ||||||||| |||||| |||||    
T  8615871 ttacaagttgaggaatgctctaaagaataaggatgttgctttaaagctatcatctcaaaaagttgaaaatatcaacaatgcaattactgtggctacaaat 8615772  T
Q  764 ttgcttgataagaagaatcaccagcataatgaagtagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagact 862  Q
    |||||||||   | |||| ||||||| | ||||||||| ||||| || | | |||||||||||||| | || ||||| ||| |||||||| | ||||||    
T  8615771 ttgcttgat---aggaataaccagcagagtgaagtagaagttctcgaagatcatctgaaggagctcaaaagtatgttggaagaccttgtatttaagact 8615676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 454 - 724
Target Start/End: Complemental strand, 3146633 - 3146363
Alignment:
Q  454 atgctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaagg 553  Q
    ||||||| ||||| |||||||||| ||| | | ||||||||  || |||| ||||||||| | ||| || ||||| ||| |||| ||||||||||||||     
T  3146633 atgctttactatcaatgaaaatggcatcttaattgtttctgctaatgaaaaatccactggtagtacgaatgagattacagtaactaatgacaaagaaaga 3146534  T
Q  554 ttgtcagcatatgaaattnnnnnnntgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattag 653  Q
    |||||| |  | ||||||       ||||  ||||||| ||  | || |||| ||| ||||| ||||| |||||||||||  | ||||||||||||||||    
T  3146533 ttgtcatcccaagaaattataaaaatgatcaaagaagctgaaaattaccgtgttgaggatgaaaaatttctaaggaaggccaatgtaatgaatgcattag 3146434  T
Q  654 atgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaa 724  Q
    || | |||||||||||| ||| ||||||| | ||||| |||||||| ||  |||| ||||| ||| |||||    
T  3146433 attattgtgtttacaagatgaaaaatgctttaaagaagaaggatgtgaatataaatctctcctctcaagaa 3146363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 356 - 559
Target Start/End: Complemental strand, 8653911 - 8653708
Alignment:
Q  356 gtttatgagggtgagagagcaagaactagtgacaataattttcttggtatgttgactctttcttgcacttcgggtccccgtggccagacctttgaaagat 455  Q
    |||||||||||||||||| ||||| |||||||||||||| | |||||| | || || |||||||||  | | ||||||||||| ||| |||| ||   ||    
T  8653911 gtttatgagggtgagagaccaagagctagtgacaataatctgcttggtttatttacactttcttgccttccaggtccccgtggtcagcccttggaggtat 8653812  T
Q  456 gctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaaggtt 555  Q
    ||||| | || ||||||||||||||| | ||||||||||  ||||| |   ||||||| | |   ||||||||||| || || ||||| |||||||||||    
T  8653811 gcttttccattgatgaaaatggtatcttaactgtttctggtaaggatatcaccactggaattctgaacgagatcaccatcactaatgagaaagaaaggtt 8653712  T
Q  556 gtca 559  Q
    ||||    
T  8653711 gtca 8653708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 428 - 559
Target Start/End: Complemental strand, 8666811 - 8666680
Alignment:
Q  428 ggtccccgtggccagacctttgaaagatgctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgaga 527  Q
    ||||||||||||||| |||| ||   ||||||| | || ||||||||||||||| |||||||| |||  | ||||| |||||| |||||||  |||  ||    
T  8666811 ggtccccgtggccagcccttggaggtatgcttttcaattgatgaaaatggtatcctgactgttactgctagggaaatatccacaggcaatatgaacatga 8666712  T
Q  528 tcacaataaccaatgacaaagaaaggttgtca 559  Q
    |||| |||||||||||||||||||||||||||    
T  8666711 tcaccataaccaatgacaaagaaaggttgtca 8666680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 454 - 669
Target Start/End: Original strand, 13334167 - 13334382
Alignment:
Q  454 atgctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaagg 553  Q
    ||||||| | || ||||||||||| ||| |||| ||| |||  ||||| | ||| || |||||||  |||| |||||| || || |||||||||||||||    
T  13334167 atgcttttccattgatgaaaatggcatcctgacggttactgctaaggatatatctacaggcaatatgaacgcgatcaccattactaatgacaaagaaagg 13334266  T
Q  554 ttgtcagcatatgaaattnnnnnnntgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattag 653  Q
    || |||   |  ||||||       ||||| |||||||  ||||||| | ||  |||||| |||||||| ||||||||||  ||||||||||||||||||    
T  13334267 ttatcaatgttagaaattgaaaaaatgattaaagaagctaaggaataccatgtcgaagataagaaattcttaaggaaggccaaggtaatgaatgcattag 13334366  T
Q  654 atgactgtgtttacaa 669  Q
    ||   |||||||||||    
T  13334367 attcttgtgtttacaa 13334382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 607 - 724
Target Start/End: Complemental strand, 8646093 - 8645976
Alignment:
Q  607 tgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaatta 706  Q
    |||||||||||||||||||||||||||  | |||||||||| ||||||  | ||  |||| ||| |||  || ||||| ||||  |||||||| ||||||    
T  8646093 tgaagatgagaaattcctaaggaaggccaatgtaatgaatggattagaccattgcatttataagctgaagaaagctctaaagaggaaggatgttaaatta 8645994  T
Q  707 aaactctcttctaaagaa 724  Q
    || ||||| |||||||||    
T  8645993 aatctctcatctaaagaa 8645976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 359 - 669
Target Start/End: Original strand, 10495078 - 10495388
Alignment:
Q  359 tatgagggtgagagagcaagaactagtgacaataattttcttggtatgttgactctttcttgcacttcgggtccccgtggccagacctttgaaagatgct 458  Q
    ||||||||||||||||||||| ||||||| |||||| | ||||||   ||  | |||  ||    ||| ||||| ||||||||| |||| ||   |||||    
T  10495078 tatgagggtgagagagcaagagctagtgagaataatctacttggttcatttgcgcttggttatgtttcaggtcctcgtggccagcccttggaggtatgct 10495177  T
Q  459 ttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaaggttgtc 558  Q
    || | || ||||||||||| ||| |||||||| |||  ||||| | ||| || |||||||  |||| |||||| || || ||||||||||||||||||||    
T  10495178 tttccattgatgaaaatggcatcctgactgttactgctaaggatatatctacaggcaatatgaacgcgatcaccattactaatgacaaagaaaggttgtc 10495277  T
Q  559 agcatatgaaattnnnnnnntgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgac 658  Q
    |   |  ||||||       ||||| |||||||  || |||| | ||  ||||||  ||||||| ||||||||||  ||||||||| ||||||||||       
T  10495278 aatgttagaaattaaaaaaatgattaaagaagctaagaaataccatgtcgaagatatgaaattcttaaggaaggccaaggtaatgagtgcattagattct 10495377  T
Q  659 tgtgtttacaa 669  Q
    |||||||||||    
T  10495378 tgtgtttacaa 10495388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 454 - 555
Target Start/End: Complemental strand, 17259599 - 17259498
Alignment:
Q  454 atgctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaagg 553  Q
    |||||||| ||||||| ||||||||||  |||| |||||||  | ||| | ||||||||||| ||  || ||||| ||||||||||||||||||| ||||    
T  17259599 atgctttgatatcgatcaaaatggtattttgacagtttctgctatggacaaatccactggcagtaagaatgagattacaataaccaatgacaaaggaagg 17259500  T
Q  554 tt 555  Q
    ||    
T  17259499 tt 17259498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 607 - 718
Target Start/End: Original strand, 8640653 - 8640764
Alignment:
Q  607 tgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaatta 706  Q
    ||||| |||||||||||||||||||||  |  ||||||||| ||||||  | ||  |||||||| |||  |||||||| |||||||||||| | ||| ||    
T  8640653 tgaagctgagaaattcctaaggaaggccaatttaatgaatggattagactattgcatttacaagatgaagaatgctctaaagaataaggatattaaacta 8640752  T
Q  707 aaactctcttct 718  Q
    || |||||||||    
T  8640753 aagctctcttct 8640764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 13334072 - 13334116
Alignment:
Q  359 tatgagggtgagagagcaagaactagtgacaataattttcttggt 403  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||    
T  13334072 tatgagggtgagagagcaagagctagtgacaataatctacttggt 13334116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 3146731 - 3146684
Alignment:
Q  356 gtttatgagggtgagagagcaagaactagtgacaataattttcttggt 403  Q
    |||||||||||||||||||||||| |||||||||| ||| | ||||||    
T  3146731 gtttatgagggtgagagagcaagagctagtgacaacaatctgcttggt 3146684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 462 - 557
Target Start/End: Complemental strand, 6788870 - 6788775
Alignment:
Q  462 ctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaaggttgt 557  Q
    |||| ||||||||||||||  |||| |||||||  |  |||| |||||| |||||||  || ||||| || ||||||||| |||||||||||||||    
T  6788870 ctattgatgaaaatggtattttgaccgtttctgctactgaaaaatccacgggcaatatgaatgagattaccataaccaattacaaagaaaggttgt 6788775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 798 - 863
Target Start/End: Complemental strand, 8658388 - 8658323
Alignment:
Q  798 tagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactg 863  Q
    |||||||| |||||| | ||||||||||||| || | |||||| ||||| ||||||||||| ||||    
T  8658388 tagatgttgttgaggatcatctgaaggagctggaaatcatgttggaaaagcttgtagtcaatactg 8658323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 454 - 555
Target Start/End: Complemental strand, 17267302 - 17267201
Alignment:
Q  454 atgctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaagg 553  Q
    |||||||| | ||||| ||||||||||  |||| |||||||  | ||| | ||||||||| | ||  || ||||| ||||||||||||||||||| ||||    
T  17267302 atgctttgatgtcgatcaaaatggtattttgacagtttctgctatggacaaatccactggtagtaagaatgagattacaataaccaatgacaaaggaagg 17267203  T
Q  554 tt 555  Q
    ||    
T  17267202 tt 17267201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 454 - 870
Target Start/End: Original strand, 16662797 - 16663210
Alignment:
Q  454 atgctttgctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaagg 553  Q
    ||||||||||||||||||||| || ||| | |||||||| |   |||||| |||||| || | ||  || |||||||| |||||||||||||||||||||    
T  16662797 atgctttgctatcgatgaaaacggcatcttaactgtttcagcagaggaaagatccaccggaagtaagaatgagatcacgataaccaatgacaaagaaagg 16662896  T
Q  554 ttgtcagcatatgaaattnnnnnnntgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattag 653  Q
    || ||   |   ||||||       |||||||||||||  |||| || | ||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  16662897 ttatccagagtcgaaattgaaaaattgattcaagaagctaaggagtaccatgctgaagatgagaaattcctaaggaaggccaaggtaatgaatgcattag 16662996  T
Q  654 atgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaagataaatggtgcaattacagt 753  Q
    |||||||  ||||||| ||||| |||||||| ||||||||| ||||||||||||| || ||||   || ||  || |||||| |||  ||||||||| ||    
T  16662997 atgactgcatttacaaattgaggaatgctctaaagaataagaatgtcaaattaaagctttctttccaaaaaaataaaaagatcaatcatgcaattacggt 16663096  T
Q  754 ggctgcaaatttgcttgataagaagaatcaccagcataatgaagtagatgttcttgagggtaatctgaaggagctcgagagcatgttcgaaaaccttgta 853  Q
    ||||  | |||||||| || ||||||   |||||   |||||||||||||||||||||| | ||||||||||||| ||||| ||||| ||  ||||||||    
T  16663097 ggctaaagatttgcttcatgagaaga---accaggggaatgaagtagatgttcttgaggatcatctgaaggagcttgagagtatgttggatcaccttgta 16663193  T
Q  854 gtcaagactgactagtt 870  Q
     ||||||||| ||||||    
T  16663194 atcaagactgtctagtt 16663210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 465 - 559
Target Start/End: Original strand, 16658333 - 16658427
Alignment:
Q  465 tcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaaggttgtca 559  Q
    ||||||||||||||||| | ||||||||||  ||||||  ||| || || ||||||||| ||||||| ||||||||||| |||||||| ||||||    
T  16658333 tcgatgaaaatggtatcctaactgtttctgctaaggaagtatctacaggaaatacaaacaagatcaccataaccaatgaaaaagaaagattgtca 16658427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 510 - 559
Target Start/End: Original strand, 12246267 - 12246316
Alignment:
Q  510 ctggcaatacaaacgagatcacaataaccaatgacaaagaaaggttgtca 559  Q
    |||||||| |||| ||||| |||||||| ||| |||||||||||||||||    
T  12246267 ctggcaattcaaatgagattacaataactaattacaaagaaaggttgtca 12246316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 470 - 783
Target Start/End: Complemental strand, 30774602 - 30774289
Alignment:
Q  470 gaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaatacaaacgagatcacaataaccaatgacaaagaaaggttgtcagcatatgaaa 569  Q
    |||||||||||  ||| ||||||||  | ||||| ||||||||||||||  || |||||||| |||||||| |||||||||||||| ||   | | ||||    
T  30774602 gaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaatgagatcacgataaccaacgacaaagaaaggttatccagagaagaaa 30774503  T
Q  570 ttnnnnnnntgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaa 669  Q
    ||       |||||||||||||    || || |||||||||||||||||||||||||||||| |   |||||||||||||||||||  |||  |||||||    
T  30774502 ttaacaaaatgattcaagaagctagagagtaccgtgctgaagatgagaaattcctaaggaagtctatggtaatgaatgcattagattgctgcatttacaa 30774403  T
Q  670 gttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaagataaatggtgcaattacagtggctgcaaatttgctt 769  Q
    |||||| |||| ||| |||| |||||| || || ||||| || || ||| || || | | |||||| | || ||||||| |||||||| |||||||||||    
T  30774402 gttgaggaatggtctaaagattaaggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcactgatgcaattgcagtggctacaaatttgctt 30774303  T
Q  770 gataagaagaatca 783  Q
    |||||||| |||||    
T  30774302 gataagaataatca 30774289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 462 - 516
Target Start/End: Complemental strand, 35131817 - 35131763
Alignment:
Q  462 ctatcgatgaaaatggtatcatgactgtttctgtgaaggaaacatccactggcaa 516  Q
    |||||||||||||||||||  ||||||||||||  ||||||| |||||| |||||    
T  35131817 ctatcgatgaaaatggtattttgactgtttctgctaaggaaaaatccaccggcaa 35131763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 609 - 718
Target Start/End: Complemental strand, 43744027 - 43743918
Alignment:
Q  609 aagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaa 708  Q
    ||||||||||||| || ||||| ||  | |||||||||||||||||||| || |||||||||||||| |||||| | |||||||||||||| ||||||||    
T  43744027 aagatgagaaatttcttaggaaagccaatgtaatgaatgcattagatgaatgggtttacaagttgaggaatgctgtaaagaataaggatgttaaattaaa 43743928  T
Q  709 actctcttct 718  Q
     || ||||||    
T  43743927 gctttcttct 43743918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 612 - 722
Target Start/End: Complemental strand, 43445894 - 43445783
Alignment:
Q  612 atgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtg-tttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaac 710  Q
    |||||||||| || ||||||||  | |||||||||||||||||||| || | |||||| |||||| |||| | | |||||||||||| | |||||||| |    
T  43445894 atgagaaatttcttaggaaggccaatgtaatgaatgcattagatgaatgggttttacaggttgaggaatgttgtaaagaataaggatattaaattaaagc 43445795  T
Q  711 tctcttctaaag 722  Q
    |||| |||||||    
T  43445794 tctcgtctaaag 43445783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 609 - 697
Target Start/End: Complemental strand, 28219129 - 28219041
Alignment:
Q  609 aagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggat 697  Q
    ||||||| ||||| |||||||||||  | || |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  28219129 aagatgaaaaatttctaaggaaggccaatgtcatgaatgcattagatgactgcgtttacaagttgaggaatgctctaaagaataaggat 28219041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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