View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5586-Insertion-3 (Length: 830)

Name: NF5586-Insertion-3
Description: NF5586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5586-Insertion-3
NF5586-Insertion-3
[»] chr1 (12 HSPs)
chr1 (234-830)||(9168461-9169048)
chr1 (8-237)||(9169794-9170023)
chr1 (737-827)||(15630167-15630257)
chr1 (737-827)||(15629368-15629458)
chr1 (737-827)||(6696015-6696105)
chr1 (737-830)||(28664975-28665072)
chr1 (736-816)||(2071561-2071642)
chr1 (736-808)||(2075099-2075172)
chr1 (737-827)||(2073386-2073479)
chr1 (737-827)||(2076918-2077011)
chr1 (736-817)||(23825352-23825434)
chr1 (9-50)||(9161155-9161196)
[»] chr7 (9 HSPs)
chr7 (737-826)||(2628265-2628354)
chr7 (737-827)||(15614271-15614361)
chr7 (738-821)||(21814428-21814510)
chr7 (737-827)||(46963085-46963175)
chr7 (737-827)||(46964439-46964529)
chr7 (766-827)||(6840627-6840688)
chr7 (737-813)||(6841471-6841547)
chr7 (783-830)||(44337393-44337440)
chr7 (737-806)||(21811668-21811737)
[»] chr6 (7 HSPs)
chr6 (737-827)||(18984497-18984587)
chr6 (737-821)||(21862689-21862773)
chr6 (738-820)||(33424005-33424087)
chr6 (761-827)||(9290675-9290741)
chr6 (737-827)||(18792864-18792954)
chr6 (766-827)||(22868490-22868551)
chr6 (737-830)||(10741772-10741864)
[»] chr3 (9 HSPs)
chr3 (737-827)||(50297460-50297550)
chr3 (737-830)||(18088152-18088244)
chr3 (738-821)||(16462968-16463050)
chr3 (737-827)||(42531289-42531379)
chr3 (737-830)||(50294658-50294749)
chr3 (737-827)||(46691470-46691559)
chr3 (737-827)||(814260-814349)
chr3 (737-827)||(42530590-42530679)
chr3 (737-827)||(814406-814498)
[»] chr2 (6 HSPs)
chr2 (737-827)||(32291155-32291245)
chr2 (736-827)||(8985573-8985664)
chr2 (737-827)||(8986927-8987017)
chr2 (736-810)||(29409109-29409183)
chr2 (737-827)||(38583512-38583602)
chr2 (734-830)||(1172783-1172878)
[»] chr4 (7 HSPs)
chr4 (737-827)||(16871651-16871741)
chr4 (744-827)||(16869513-16869596)
chr4 (737-830)||(54146612-54146706)
chr4 (734-830)||(54148272-54148367)
chr4 (737-820)||(16543360-16543443)
chr4 (773-827)||(37945520-37945574)
chr4 (786-830)||(24131825-24131869)
[»] scaffold0511 (1 HSPs)
scaffold0511 (737-827)||(11187-11277)
[»] chr5 (2 HSPs)
chr5 (739-827)||(24137600-24137688)
chr5 (739-830)||(11343943-11344032)
[»] chr8 (4 HSPs)
chr8 (737-824)||(43615458-43615545)
chr8 (740-826)||(33199412-33199499)
chr8 (783-830)||(20241071-20241118)
chr8 (783-830)||(20251949-20251996)
[»] scaffold0002 (1 HSPs)
scaffold0002 (737-827)||(406266-406356)
[»] scaffold0325 (1 HSPs)
scaffold0325 (736-827)||(14547-14639)


Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 234 - 830
Target Start/End: Complemental strand, 9169048 - 9168461
Alignment:
Q  234 cctaatctcatgttccacttgtttaccaaatagagttgtgaagtttaaagcagtagattttgtgattccttgttggcggtcacctttggcagccattacc 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  9169048 cctaatctcatgttccacttgtttaccaaatagagttgtgaagtttaaagcactagattttgtgattccttgttggcggtcacctttggcagctattacc 9168949  T
Q  334 atagttaaacatttnnnnnnnttgttagcattaggtatggtttcacgaagtctagcaagcttattcacaccgtgagaaaatctcttttgcaaatctgcaa 433  Q
    ||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9168948 atagttaaacatttaaaaaatttgttagcattaggtaaggtttcacgaagtctagcaagcttattcacaccatgagaaaatctcttttgcaaatctgcaa 9168849  T
Q  434 acaatttcattgtgcatcatacgaaagagctcatatctttgaacaagtgtatttatcttcgattgttttaccacaattgtctccttgtggatgacttgaa 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9168848 acaatttcattgtgcatcatacgaaagagctcatatctttgaacaagtgtatttatcttcgattgttttaccacaattgtctccttgtggatgacttgta 9168749  T
Q  534 aggtatcctaaatcgctttagcattatctccatgcgaggaacgatagtactcttgattccaaggggaagcaatgagtatgtttcacaccttcatatcata 633  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9168748 aggtatcctaaatcgctttagcattatctccatgtgaggaacgatagtactcttgattccaa-gggaagcaatgagtatgtttcacaccttcatatcata 9168650  T
Q  634 ttgaactttcttagatttagcatctgtcaattgatcttctggcttattaaggacgagaatgttttcaatttcaacagacggcac-aatgaccaattcaaa 732  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||    
T  9168649 ttgaactttcttagatttagcatctgtcaattgatcttctggcttattaaggacgggaatgttttcaatttcaatagaaggcacaaatgaccaattcaaa 9168550  T
Q  733 aatgtgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    || |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |         ||||||||||||||||||||||||||||    
T  9168549 aaggtgttagataataaagtattgcacttaagctattgaacctttatatcagtaagttaca---------gttttattatatattctcttataacatt 9168461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 9170023 - 9169794
Alignment:
Q  8 ggatgatggaagatgattgggagatgtcaaaatatatatacttttatttttgttctatccatttgaattatttttgtattctgtgtgattgacccaatca 107  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9170023 ggatgatggaagatgattgtgatatgtcaaaatatatatacttttatttttgttctatccatttgaattatttttgtattctgtgtgattgacccaatca 9169924  T
Q  108 ttttcttgattttaattttatttattgaaaactttcggtacaattcattataggatcaataaaatctctatgttatcaattttgtaatcatgttattggt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9169923 ttttcttgattttaattttatttattgaaaactttcggtacaattcattataggatcaataaaatctctatgttatcaattttgtaatcatgttattggt 9169824  T
Q  208 gcagagtatctactaatttgtcgttaccta 237  Q
    ||||||||||||||||||||||||||||||    
T  9169823 gcagagtatctactaatttgtcgttaccta 9169794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 15630257 - 15630167
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||| |||||||||||||| ||||||| ||||| |||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||    
T  15630257 tgttaaataataaagtattgagcttaaattattgggcctttatattagtaagttagagtctattaggttttattatatattctcttataac 15630167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 15629458 - 15629368
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||| ||||| ||||||  |||||  ||||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||    
T  15629458 tgttagataataaaatattgggcttaagttattggacctttatattagtaagttagagttcattagattttattatatattctcttataac 15629368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 6696015 - 6696105
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||||||||  ||||||  ||||| || ||||||| ||||||||| ||| |||||| |||||||| |||||||||||||||    
T  6696015 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattaaatattctcttataac 6696105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 737 - 830
Target Start/End: Original strand, 28664975 - 28665072
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattg----ag-cctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    |||||||||||||||||||| ||||||||||||     || ||||||||| ||||||||| ||| |||||||||| |||||||||||||| ||||||||    
T  28664975 tgttagataataaagtattgagcttaaactattagattagacctttatattagtaagttagagtccattaggttt-attatatattctctcataacatt 28665072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 736 - 816
Target Start/End: Complemental strand, 2071642 - 2071561
Alignment:
Q  736 gtgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagtta-tagtacattaggttttattatatat 816  Q
    ||||||||||||||| ||||| |||||| |||||| ||||| |||| |||||||||  ||| |||||||||||| |||||||    
T  2071642 gtgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggttttagtatatat 2071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 808
Target Start/End: Complemental strand, 2075172 - 2075099
Alignment:
Q  736 gtgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagtta-tagtacattaggtttta 808  Q
    ||||||||||||||| ||||| |||||| |||||| ||||| |||| |||||||||  ||| ||||||||||||    
T  2075172 gtgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggtttta 2075099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 2073479 - 2073386
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagtta-tagtacattaggtttta--ttatatattctcttataac 827  Q
    |||||||||||||| ||||| |||||| |||||   |||| |||| |||||||||  ||| ||||||||||||   ||||||||||||||||||    
T  2073479 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatatattctcttataac 2073386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 2077011 - 2076918
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagtta-tagtacattaggtttta--ttatatattctcttataac 827  Q
    |||||||||||||| ||||| |||||| |||||   |||| |||| |||||||||  ||| ||||||||||||   ||||||||||||||||||    
T  2077011 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatatattctcttataac 2076918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 736 - 817
Target Start/End: Original strand, 23825352 - 23825434
Alignment:
Q  736 gtgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagtta-tagtacattaggttttattatatatt 817  Q
    ||||||||||||||||||||   |||||||||||| |||||||||| | | |||||  ||| ||||| ||| |||||||||||    
T  23825352 gtgttagataataaagtatttaacttaaactattgggcctttatattattgagttagcagttcattatgttctattatatatt 23825434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 9161196 - 9161155
Alignment:
Q  9 gatgatggaagatgattgggagatgtcaaaatatatatactt 50  Q
    |||||||||||||||||| || |||||||||||| |||||||    
T  9161196 gatgatggaagatgattgtgatatgtcaaaatatgtatactt 9161155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 737 - 826
Target Start/End: Complemental strand, 2628354 - 2628265
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataa 826  Q
    |||||||||||||||||||| ||||||  ||||||| |||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||    
T  2628354 tgttagataataaagtattgagcttaagttattgagtctttatattagtaagttagagtccattaggttttattatatattctctcataa 2628265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 15614361 - 15614271
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||||||||| ||||||  |||||  ||||||||| || |||||| ||| ||||||||||||||||||||||| |||||||    
T  15614361 tgttagataataaagtattgggcttaagttattggacctttatattagcaagttagagtccattaggttttattatatattcttttataac 15614271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 738 - 821
Target Start/End: Original strand, 21814428 - 21814510
Alignment:
Q  738 gttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctct 821  Q
    ||||||||||||||||||| ||||||  |||| ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  21814428 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctct 21814510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 46963175 - 46963085
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||||||||  ||||||  ||||| || ||||||| ||||||||| ||| |||||| |||||||| |||||||||||||||    
T  46963175 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattagatattctcttataac 46963085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 46964529 - 46964439
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||||| |||  ||||||  ||||| || ||||||| |||| |||| ||| |||||| ||||||||||||||||||||||||    
T  46964529 tgttagataataaaggattaggcttaagttattgggcatttatattagtacgttagagtccattagattttattatatattctcttataac 46964439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 766 - 827
Target Start/End: Complemental strand, 6840688 - 6840627
Alignment:
Q  766 tattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||| |||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||    
T  6840688 tattgggcctttatatcagtaagttagagtccgttaggttttattatatattcttttataac 6840627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 737 - 813
Target Start/End: Complemental strand, 6841547 - 6841471
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattata 813  Q
    |||||||||||||| ||| |  |||||  ||||| |||||||||||||||||||| ||| | |||| ||||||||||    
T  6841547 tgttagataataaaatatcggacttaagttattgggcctttatatcagtaagttagagtccgttagattttattata 6841471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 830
Target Start/End: Original strand, 44337393 - 44337440
Alignment:
Q  783 agtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    ||||||||| ||| | |||| |||||||||||||||||||||||||||    
T  44337393 agtaagttagagtccgttagattttattatatattctcttataacatt 44337440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 806
Target Start/End: Original strand, 21811668 - 21811737
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttt 806  Q
    ||||||||||||| |||||| | |||| |||||  |||||||||| ||||||||| |||  |||||||||    
T  21811668 tgttagataataatgtattgggtttaagctattaggcctttatattagtaagttagagtcaattaggttt 21811737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 18984497 - 18984587
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||| |||||||| ||||| ||||| | ||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  18984497 tgttaaataataaaatattgggcttagattattgggcctttatattagtaagttagagtacattatgttttattatatattctcttataac 18984587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 737 - 821
Target Start/End: Original strand, 21862689 - 21862773
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctct 821  Q
    |||||||||||||||||||| |||||| |||||| | |||||||| || |||||| ||| |||||||||||||||||||||||||    
T  21862689 tgttagataataaagtattgagcttaagctattgggtctttatattagcaagttagagtgcattaggttttattatatattctct 21862773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 738 - 820
Target Start/End: Complemental strand, 33424087 - 33424005
Alignment:
Q  738 gttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctc 820  Q
    ||||||||||||||||||| ||||||  ||||| | |||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  33424087 gttagataataaagtattgagcttaagttattgcgtctttatattagtaagttaaagttcattaggttttattatatattctc 33424005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 761 - 827
Target Start/End: Complemental strand, 9290741 - 9290675
Alignment:
Q  761 taaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||| |||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||    
T  9290741 taaagtattgagcctttatattaataagttagagtccattaggttttattatatattctcttataac 9290675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 18792954 - 18792864
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||| ||||| |||| |  |||||||||  ||||| ||||||||| ||| ||||| |||||||| ||||||||||||||||    
T  18792954 tgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctcttataac 18792864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 766 - 827
Target Start/End: Original strand, 22868490 - 22868551
Alignment:
Q  766 tattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||| || ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  22868490 tattgggcttttatattagtaagttagagtccattaggttttattatatattctcttataac 22868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 737 - 830
Target Start/End: Original strand, 10741772 - 10741864
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    |||||||||||||| ||||| ||||||  ||||| | |||||||| || |||||| ||| ||||| | ||||||||||||||||| ||||||||    
T  10741772 tgttagataataaaatattgggcttaagttattgggtctttatattagaaagttagagtccatta-gatttattatatattctctcataacatt 10741864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 9e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 50297460 - 50297550
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||||||||| ||||||  ||||||| |||||||| ||||||||| ||| ||||| |||||||||||| ||| ||||||||    
T  50297460 tgttagataataaagtattgtgcttaagttattgagtctttatattagtaagttagagttcattatgttttattatatgttcacttataac 50297550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 737 - 830
Target Start/End: Complemental strand, 18088244 - 18088152
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    |||| ||||||||||||||| |||||| |||||  |||||||||| ||||||||| ||| ||||||| ||||||||||||||||| ||||||||    
T  18088244 tgttggataataaagtattgggcttaagctattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataacatt 18088152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 738 - 821
Target Start/End: Original strand, 16462968 - 16463050
Alignment:
Q  738 gttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctct 821  Q
    ||||||||||||||||||| ||||||  |||| ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  16462968 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctct 16463050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 42531289 - 42531379
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||||| |||| |||| |  |||||  | ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  42531289 tgttagataataaaggattgggcttgagttattggacttttatattagtaagttaaagttcattaggttttattatatattctcttataac 42531379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 737 - 830
Target Start/End: Original strand, 50294658 - 50294749
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    |||||||| ||||||||||| ||||||  |||||| ||||||||| | ||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  50294658 tgttagatgataaagtattg-gcttaagttattga-cctttatattaataagttagagtccattaggttttattatatattatcttataacatt 50294749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 46691559 - 46691470
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||||||||||  |||||  |||||  ||||||||  ||||||||| ||| ||||| |||||||||||||||||||||||||    
T  46691559 tgttagataataaagtattgaacttaagttattggacctttatactagtaagttagagtccatta-gttttattatatattctcttataac 46691470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 814260 - 814349
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||||||||||  |||||  ||||| || ||||||| ||||||||| ||| ||||||||||  || ||||||||||||||||    
T  814260 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgtt-tatattctcttataac 814349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 42530590 - 42530679
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||||||||||  ||| |  || ||| | ||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||    
T  42530590 tgttagataataaagtattggacttgagttagtga-cttttatattagtaaattaaagttcattaggttttattatatattctcttataac 42530679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 814498 - 814406
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttt--tattatatattctcttataac 827  Q
    ||||||||||||||||||||  |||||  ||||| || ||||||| ||||||||| ||| ||||||||||  |  ||||||||||||||||||    
T  814498 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgttatatatattctcttataac 814406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 32291155 - 32291245
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||||||||| ||||||  ||||| | |||||||| ||||||||| ||| ||||| | |||||||||||||||||||||||    
T  32291155 tgttagataataaagtattgagcttaagttattgtgtctttatattagtaagttagagtccattaagatttattatatattctcttataac 32291245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 736 - 827
Target Start/End: Original strand, 8985573 - 8985664
Alignment:
Q  736 gtgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||||||||||  ||||||  |||||  | ||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||    
T  8985573 gtgttagataataaagtattaggcttaagttattggacatttatattagtaagttaaagtccattagattttattatatattctcttataac 8985664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 8986927 - 8987017
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||||||||  ||||||  ||||| || ||||||| ||||||||| ||| |||||  ||||||||||||||||||||||||    
T  8986927 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattaaattttattatatattctcttataac 8987017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 736 - 810
Target Start/End: Complemental strand, 29409183 - 29409109
Alignment:
Q  736 gtgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttatt 810  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||| | ||||||||| ||| |||||  |||||||    
T  29409183 gtgttagataataaagtattgtgcttaagctattgagcatttattttagtaagttagagtccattaaattttatt 29409109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 38583602 - 38583512
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||| ||||  ||||||| ||||| |||||||||| ||||||||| |   | |||| ||||||||||||||| ||||||||    
T  38583602 tgttagataataaaatattaggcttaaattattgggcctttatattagtaagttagaacccgttagattttattatatattcgcttataac 38583512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 734 - 830
Target Start/End: Complemental strand, 1172878 - 1172783
Alignment:
Q  734 atgtgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    |||||||||||||||||||||||  |||||||||||  ||||| |||| | ||| ||| ||| ||||  | ||||||||||||||||| ||||||||    
T  1172878 atgtgttagataataaagtattgtacttaaactattaggccttaatattaataaattagagtccatt-cgatttattatatattctctcataacatt 1172783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 16871651 - 16871741
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||||||||  ||||||  ||||| || ||||||| ||||||||| ||| |||||| |||||||||||||| |||||||||    
T  16871651 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattatatattatcttataac 16871741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 744 - 827
Target Start/End: Original strand, 16869513 - 16869596
Alignment:
Q  744 taataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||| ||||||  ||||| || ||||||| ||||||||| ||| |||||| |||||||||||| |||||||||||    
T  16869513 taataaagtattgagcttaagttattgggcttttatattagtaagttagagttcattagattttattatatactctcttataac 16869596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 737 - 830
Target Start/End: Original strand, 54146612 - 54146706
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactatt--gagcctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    |||||||||||||||||||  ||||||||||||  | |||||||||| ||||||||| ||| ||||| | ||||| ||||||||||| ||||||||    
T  54146612 tgttagataataaagtattaagcttaaactattaggcgcctttatattagtaagttagagtccatta-gatttatcatatattctctcataacatt 54146706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 734 - 830
Target Start/End: Original strand, 54148272 - 54148367
Alignment:
Q  734 atgtgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    ||||||||||||| |||| |||| |||||| |||||  || ||||||| ||||||||| ||| || || | ||||||||||||||||| ||||||||    
T  54148272 atgtgttagataacaaagcattgagcttaagctattaggcttttatattagtaagttagagtccaata-gatttattatatattctctcataacatt 54148367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 737 - 820
Target Start/End: Original strand, 16543360 - 16543443
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctc 820  Q
    ||||||||||||||||| ||  |||||  |||||  | ||||||| ||||||||| ||| ||||| ||||||||||||||||||    
T  16543360 tgttagataataaagtaatggacttaagttattggccttttatattagtaagttagagttcattaagttttattatatattctc 16543443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 773 - 827
Target Start/End: Original strand, 37945520 - 37945574
Alignment:
Q  773 cctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||||||| ||||||||| ||| |||||  ||||||||||||||||||||||||    
T  37945520 cctttatattagtaagttagagtccattaaattttattatatattctcttataac 37945574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 786 - 830
Target Start/End: Original strand, 24131825 - 24131869
Alignment:
Q  786 aagttatagtacattaggttttattatatattctcttataacatt 830  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||    
T  24131825 aagttagagtccattaggttttattatatgttctcttataacatt 24131869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 737 - 827
Target Start/End: Original strand, 11187 - 11277
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||| ||||| |||| |  |||||||||  ||||| ||||||||| ||| ||||| |||||||| ||||||||||||||||    
T  11187 tgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctcttataac 11277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 739 - 827
Target Start/End: Original strand, 24137600 - 24137688
Alignment:
Q  739 ttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    ||||| |||||||||||| |||| |  ||||| ||||||| |  ||||||||| |||  ||||||||||||||||||||||||||||||    
T  24137600 ttagacaataaagtattgagcttcagttattgggcctttacactagtaagttagagtctattaggttttattatatattctcttataac 24137688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 739 - 830
Target Start/End: Complemental strand, 11344032 - 11343943
Alignment:
Q  739 ttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    |||||||||||||||||| ||||||  |||||    ||||||| ||||||||| ||| ||||| ||||||||||||| ||||||||||||||    
T  11344032 ttagataataaagtattgggcttaat-tattggctatttatattagtaagttagagt-cattaagttttattatatactctcttataacatt 11343943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 737 - 824
Target Start/End: Original strand, 43615458 - 43615545
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttat 824  Q
    |||||||||||||| |||||  ||| |  |||||||| ||||||| ||||||||| ||| |||||| |||||||||||||| ||||||    
T  43615458 tgttagataataaaatattgaactttagttattgagcttttatattagtaagttagagtccattagattttattatatattttcttat 43615545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 826
Target Start/End: Original strand, 33199412 - 33199499
Alignment:
Q  740 tagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagta-cattaggttttattatatattctcttataa 826  Q
    |||||||||||||||||  |||||  |||||||| ||||||| ||||||| | ||||  ||||||||||||||||||||  |||||||    
T  33199412 tagataataaagtattgatcttaagttattgagcttttatattagtaagtcagagtataattaggttttattatatatttccttataa 33199499  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 830
Target Start/End: Original strand, 20241071 - 20241118
Alignment:
Q  783 agtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    ||||||||| ||| | |||| |||||||||||||||||||||||||||    
T  20241071 agtaagttagagtccgttagattttattatatattctcttataacatt 20241118  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 783 - 830
Target Start/End: Complemental strand, 20251996 - 20251949
Alignment:
Q  783 agtaagttatagtacattaggttttattatatattctcttataacatt 830  Q
    ||||||||| ||| | |||| |||||||||||||||||||||||||||    
T  20251996 agtaagttagagtccgttagattttattatatattctcttataacatt 20251949  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 737 - 827
Target Start/End: Complemental strand, 406356 - 406266
Alignment:
Q  737 tgttagataataaagtattgcgcttaaactattgagcctttatatcagtaagttatagtacattaggttttattatatattctcttataac 827  Q
    |||||||||||||||||||  | ||||  ||||| |||||||||| || |||||| ||| | ||| ||||||||||||||||| |||||||    
T  406356 tgttagataataaagtattaggtttaagttattgggcctttatattagcaagttagagtcctttaagttttattatatattctattataac 406266  T

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Target: scaffold0325 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 736 - 827
Target Start/End: Complemental strand, 14639 - 14547
Alignment:
Q  736 gtgttagataataaagtattgcgcttaaactattgagcctttat-atcagtaagtt-atagtacattaggttttattatatattctcttataac 827  Q
    ||||||||||||||||||||| |||||| |||||| |||||||| || | |||||| |||||   |||||||||| ||||||||||||||||||    
T  14639 gtgttagataataaagtattgggcttaagctattgggcctttatcattactaagttcatagtctgttaggtttta-tatatattctcttataac 14547  T

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