View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5586-Insertion-5 (Length: 631)

Name: NF5586-Insertion-5
Description: NF5586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5586-Insertion-5
NF5586-Insertion-5
[»] chr1 (2 HSPs)
chr1 (10-631)||(50764481-50765102)
chr1 (15-90)||(38651521-38651595)
[»] chr5 (4 HSPs)
chr5 (15-92)||(26516180-26516256)
chr5 (15-93)||(20982247-20982324)
chr5 (12-93)||(32172534-32172614)
chr5 (15-79)||(7096239-7096303)
[»] chr8 (6 HSPs)
chr8 (14-97)||(2107437-2107519)
chr8 (19-93)||(28769455-28769528)
chr8 (15-79)||(10727091-10727155)
chr8 (15-91)||(31884477-31884552)
chr8 (15-79)||(39392773-39392837)
chr8 (15-79)||(8060556-8060620)
[»] chr6 (2 HSPs)
chr6 (15-93)||(6963168-6963245)
chr6 (15-52)||(29249395-29249432)
[»] chr4 (2 HSPs)
chr4 (12-91)||(43932316-43932394)
chr4 (15-100)||(485955-486039)
[»] chr3 (1 HSPs)
chr3 (42-93)||(23530325-23530375)
[»] chr2 (2 HSPs)
chr2 (15-93)||(11393478-11393555)
chr2 (15-93)||(11410139-11410216)


Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 10 - 631
Target Start/End: Original strand, 50764481 - 50765102
Alignment:
Q  10 ttttgtagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggcttatgttgataa 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764481 ttttgtagaaatagcttatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggcttatgttgataa 50764580  T
Q  110 acagaaaatgataacattccagggaagaccattaccatcttgaaaacctgctttcccatatgcatctactaagatattataagaggctcgatctggttca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764581 acagaaaatgataacattccagggaagaccattaccatcttgaaaacctgctttcccatatgcatctactaagatattataagaggctcgatctggttca 50764680  T
Q  210 catcccatgtgctgcattaatgaaaaaatttctgctgctccataaggaaagcctgcacgactgttcccggaagagaaat-atgatttttgttttctctag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  50764681 catcccatgtgctgcattaatgaaaaaatttctgctgctccataaggaaagcctgcacgactgttccgggaagagaaattatgatttttgttttctctag 50764780  T
Q  309 gtatataaaccaatagatcaaagggataacacattaatcaatcaaaaaggcatttatactgtcgtatataacaacctgtaagcttccataagggcattat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764781 gtatataaaccaatagatcaaagggataacacattaatcaatcaagaaggcatttatactgtcgtatataacaacctgtaagcttccataagggcattat 50764880  T
Q  409 aagcatatacatcaggttcaagtcctgcttcttgcatctgctcaaatatttcttctgctttctcacataatccctctcttgcaaatgcattcactagagc 508  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764881 aagcatatacatcaggttcaagtccagcttcttgcatctgctcaaatatttcttctgctttctcacataatccctctcttgcaaatgcattcactagagc 50764980  T
Q  509 agtatatgtgcaaatattaggtttgcacttttggcttaacatttcatcgaacacttttaaggccatgtaggatttaccggcctgcataaaattcaaattt 608  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50764981 agtatatgtgcaaatattaggtttgcatttttggcttaacatttcatcgaacacttttaaggccatgtaggatttaccggcctgcataaaattcaaattt 50765080  T
Q  609 caattccattaaacataattgtg 631  Q
    |||||||||| ||||||||||||    
T  50765081 caattccatt-aacataattgtg 50765102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 38651521 - 38651595
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaa 90  Q
    ||||| ||||| ||||||||||| ||  ||||||| ||| |||||||||||||| ||||| ||| |||||||||||    
T  38651521 tagaattagcttatacataagcacttacatgataaacacgtattctataaatgcataatt-agtctgtttatccaa 38651595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 26516256 - 26516180
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaac 92  Q
    ||||||||||| ||||||||||| || |||||||||| | ||| ||||||  ||||||||||| ||||||||||||||    
T  26516256 tagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaag-ttgtttatccaaac 26516180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 20982247 - 20982324
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 93  Q
    ||||||||||| ||||||||||| || |||||||||||| ||| ||||||   |||||| ||| |||||||||||||||    
T  20982247 tagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaag-ttgtttatccaaaca 20982324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 32172614 - 32172534
Alignment:
Q  12 ttgtagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 93  Q
    |||||||||||| | ||||||||||  ||||||||||||| | ||| || |||  ||||||||| | |||||||||||||||    
T  32172614 ttgtagaaatagtttatacataagctcttgtatgataagcgcttatgctgtaagcgcttaattatg-ttgtttatccaaaca 32172534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 7096239 - 7096303
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtt 79  Q
    ||||||||||| ||||||||||| ||||||||| |   ||||| ||||||||| ||||| |||||    
T  7096239 tagaaatagcttatacataagcacttgtatgattaatgcatatgctataaatgtttaatcaagtt 7096303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 2107437 - 2107519
Alignment:
Q  14 gtagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggc 97  Q
    ||||||||| || ||||||||| | || |||||||||| ||||  ||||||| ||||||||||| ||||||||||||| |||||    
T  2107437 gtagaaataacttatacataagaacttatatgataagcgcataagctataaacgcttaattaag-ttgtttatccaaaaatggc 2107519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 28769455 - 28769528
Alignment:
Q  19 aatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 93  Q
    ||||||| ||||||||||| || |||||||||||| ||| |||||||||||| ||| ||  ||||||||||||||    
T  28769455 aatagcttatacataagcatttatatgataagcacttatgctataaatgcttgatttag-ctgtttatccaaaca 28769528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 10727155 - 10727091
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtt 79  Q
    ||||||||||| || |||||||| || |||||| | ||| ||| |||||||||||||||||||||    
T  10727155 tagaaatagcttatgcataagcacttatatgatgaacacttatgctataaatgcttaattaagtt 10727091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 31884552 - 31884477
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaa 91  Q
    |||||||| || ||||||| ||| ||||||||||||| | ||| |||||| ||||||||| || |||||||||||||    
T  31884552 tagaaataacttatacatatgcacttgtatgataagcgcttatgctataagtgcttaattgag-ttgtttatccaaa 31884477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 39392773 - 39392837
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtt 79  Q
    ||||||||| | |||||||  || || |||||||||||| ||| |||||||||||||||||||||    
T  39392773 tagaaatagtttatacatagccacttatatgataagcacttatgctataaatgcttaattaagtt 39392837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 8060620 - 8060556
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtt 79  Q
    ||||||||||| ||| ||||||| || ||  |||||| | ||| |||||||||||||||||||||    
T  8060620 tagaaatagcttatatataagcacttataccataagctcgtatgctataaatgcttaattaagtt 8060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 6963168 - 6963245
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 93  Q
    ||||||||||| |||||||||||| | |||||||||||   || |||||| ||||||||| || |||||||||||||||    
T  6963168 tagaaatagcttatacataagcaaatatatgataagcatccatactataagtgcttaatttag-ttgtttatccaaaca 6963245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 29249432 - 29249395
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagca 52  Q
    ||||||||||||||||||||||| || |||||||||||    
T  29249432 tagaaatagctgatacataagcacttatatgataagca 29249395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 43932394 - 43932316
Alignment:
Q  12 ttgtagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaa 91  Q
    ||||| |||||| | ||||||||||| ||||||||||| ||| |||  ||||| ||||||||||| | ||||||||||||    
T  43932394 ttgtaaaaatagtttatacataagcacttgtatgataaacacttatgttataagtgcttaattaa-tctgtttatccaaa 43932316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 486039 - 485955
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaacatggctta 100  Q
    ||||||||||  ||||||||||| || |||||||||| | ||| ||||||  ||||||||||| | ||| ||||||||| ||||||    
T  486039 tagaaatagcatatacataagcacttttatgataagcgcttatgctataagcgcttaattaag-tagttcatccaaacagggctta 485955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 23530325 - 23530375
Alignment:
Q  42 tatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 93  Q
    |||||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  23530325 tatgataagtgcatattctataaatgcttaattaag-tggtttatccaaaca 23530375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 11393478 - 11393555
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 93  Q
    ||||||||||| ||| ||||||| || |||||||| ||| | | |||||| ||||||||||||  ||||||||||||||    
T  11393478 tagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaag-ctgtttatccaaaca 11393555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 11410139 - 11410216
Alignment:
Q  15 tagaaatagctgatacataagcaattgtatgataagcacatattctataaatgcttaattaagtttgtttatccaaaca 93  Q
    ||||||||||| ||| ||||||| || |||||||| ||| | | |||||| ||||||||||||  ||||||||||||||    
T  11410139 tagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaag-ctgtttatccaaaca 11410216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University