View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5586_low_1 (Length: 338)
Name: NF5586_low_1
Description: NF5586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5586_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 95 - 331
Target Start/End: Complemental strand, 37869028 - 37868793
Alignment:
| Q |
95 |
aatcatttgaactaattagaataattgattgttgaagcatgtaagttaattttgggttttgatcaatttgagaaagctcaagttattatgttggtgcagc |
194 |
Q |
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| T |
37869028 |
aatcatttgaactaattagaataattgattgttgaagcatgtaagttaattttgggttttgatcaatttgagaaagctcaagttattatgttggtgcagc |
37868929 |
T |
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| Q |
195 |
atctttgtgagccacccttgcttcttgcagcttctgttgactgtgtccctacaaccagtgcattatttgtgacacttatcaggttatcaatagataaatt |
294 |
Q |
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| T |
37868928 |
atctt-gtgagccacccttgcttcttgcagcttctgttgactgtgtccctacaaccagtgcattatttgtgacacttatcaggttatcattagataaatt |
37868830 |
T |
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| Q |
295 |
tcatttgaatcttgtcaaaataagtgggcctatgcta |
331 |
Q |
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| T |
37868829 |
tcatttgaatcttgtcaaaataagtgggcctatgcta |
37868793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 37873456 - 37873377
Alignment:
| Q |
110 |
ttagaataattgattgttgaagcatgtaagttaattttgggttttgatcaatttgagaaagctcaagttattatgttggt |
189 |
Q |
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| T |
37873456 |
ttagaataattgactgttgcagcatgtatgttaattttgacttttaatcagattgagaaagctgaagttattatgttggt |
37873377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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