View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5587-Insertion-3 (Length: 886)

Name: NF5587-Insertion-3
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5587-Insertion-3
NF5587-Insertion-3
[»] chr6 (24 HSPs)
chr6 (610-755)||(30976457-30976603)
chr6 (610-755)||(30982896-30983042)
chr6 (610-755)||(30989060-30989206)
chr6 (7-137)||(17353878-17354009)
chr6 (7-137)||(27788739-27788870)
chr6 (7-130)||(19737743-19737867)
chr6 (14-137)||(19987085-19987209)
chr6 (7-137)||(20711771-20711902)
chr6 (7-137)||(28075707-28075838)
chr6 (7-137)||(34397781-34397912)
chr6 (398-488)||(30940634-30940724)
chr6 (7-106)||(13727450-13727550)
chr6 (7-106)||(21479449-21479549)
chr6 (7-106)||(33774072-33774172)
chr6 (7-131)||(235277-235400)
chr6 (7-106)||(21280500-21280600)
chr6 (754-881)||(30941122-30941241)
chr6 (548-616)||(30940749-30940817)
chr6 (248-292)||(3567206-3567250)
chr6 (7-74)||(24711050-24711118)
chr6 (548-611)||(30976371-30976434)
chr6 (548-611)||(30982810-30982873)
chr6 (548-611)||(30988974-30989037)
chr6 (7-74)||(30832575-30832643)
[»] chr4 (33 HSPs)
chr4 (7-137)||(34027505-34027636)
chr4 (13-137)||(38352311-38352436)
chr4 (7-122)||(34768624-34768740)
chr4 (7-131)||(40089448-40089573)
chr4 (7-130)||(47128920-47129044)
chr4 (7-129)||(37777273-37777396)
chr4 (8-137)||(19498430-19498560)
chr4 (13-137)||(24969363-24969488)
chr4 (7-130)||(10978833-10978957)
chr4 (7-130)||(23509848-23509972)
chr4 (7-131)||(16844953-16845078)
chr4 (7-130)||(35465040-35465164)
chr4 (7-130)||(35779375-35779499)
chr4 (7-130)||(48209173-48209297)
chr4 (7-137)||(32128510-32128641)
chr4 (7-137)||(43455581-43455712)
chr4 (7-131)||(54083292-54083417)
chr4 (7-130)||(13460140-13460264)
chr4 (7-137)||(2790791-2790922)
chr4 (7-106)||(38209641-38209741)
chr4 (28-130)||(10428276-10428379)
chr4 (8-129)||(16882446-16882568)
chr4 (19-106)||(55255226-55255314)
chr4 (7-69)||(54780771-54780834)
chr4 (7-74)||(32915374-32915442)
chr4 (248-313)||(38870276-38870340)
chr4 (7-74)||(1105521-1105589)
chr4 (7-74)||(37514648-37514716)
chr4 (53-122)||(9578736-9578802)
chr4 (58-96)||(37746847-37746885)
chr4 (59-96)||(36118584-36118621)
chr4 (7-74)||(5128892-5128960)
chr4 (6-40)||(39655303-39655337)
[»] chr8 (16 HSPs)
chr8 (7-137)||(10917312-10917443)
chr8 (7-138)||(42600702-42600834)
chr8 (7-130)||(13534737-13534861)
chr8 (7-130)||(13624277-13624401)
chr8 (7-130)||(41879109-41879233)
chr8 (7-130)||(45475745-45475869)
chr8 (7-137)||(23798312-23798443)
chr8 (7-122)||(23606680-23606796)
chr8 (7-106)||(30883281-30883381)
chr8 (7-106)||(2952272-2952372)
chr8 (7-106)||(5860795-5860895)
chr8 (7-106)||(3048568-3048668)
chr8 (60-96)||(8646138-8646174)
chr8 (7-53)||(8102918-8102964)
chr8 (58-96)||(34789989-34790027)
chr8 (59-96)||(8102852-8102889)
[»] chr5 (19 HSPs)
chr5 (7-137)||(16198842-16198973)
chr5 (7-130)||(38869411-38869535)
chr5 (7-137)||(28822390-28822521)
chr5 (7-122)||(16799375-16799491)
chr5 (7-137)||(9364212-9364343)
chr5 (7-127)||(16592122-16592243)
chr5 (14-137)||(7670845-7670969)
chr5 (7-130)||(27078939-27079063)
chr5 (7-137)||(40389584-40389715)
chr5 (7-122)||(30854266-30854381)
chr5 (7-106)||(34756414-34756514)
chr5 (7-137)||(27924003-27924134)
chr5 (7-74)||(15480137-15480205)
chr5 (7-74)||(19523183-19523251)
chr5 (7-74)||(36187927-36187995)
chr5 (7-74)||(2274874-2274942)
chr5 (7-130)||(22986606-22986719)
chr5 (61-105)||(7079561-7079605)
chr5 (7-53)||(23284110-23284156)
[»] chr3 (23 HSPs)
chr3 (7-137)||(44708401-44708532)
chr3 (7-137)||(53506935-53507066)
chr3 (7-130)||(3953947-3954071)
chr3 (7-137)||(34290687-34290818)
chr3 (7-137)||(43207289-43207419)
chr3 (7-129)||(54407209-54407331)
chr3 (7-122)||(8073389-8073504)
chr3 (7-137)||(9878738-9878869)
chr3 (7-106)||(54619254-54619354)
chr3 (13-137)||(48157063-48157188)
chr3 (7-106)||(27078620-27078720)
chr3 (7-106)||(27084417-27084517)
chr3 (7-122)||(37168306-37168422)
chr3 (15-138)||(50939292-50939416)
chr3 (13-113)||(18372427-18372528)
chr3 (10-106)||(38681147-38681244)
chr3 (7-74)||(21582758-21582826)
chr3 (7-106)||(29620439-29620539)
chr3 (7-106)||(36716076-36716176)
chr3 (7-74)||(47467671-47467739)
chr3 (59-96)||(29598049-29598086)
chr3 (7-74)||(53149365-53149433)
chr3 (58-96)||(28689487-28689525)
[»] chr1 (25 HSPs)
chr1 (7-137)||(19955649-19955780)
chr1 (15-141)||(44895580-44895707)
chr1 (7-122)||(5316627-5316743)
chr1 (7-130)||(23185366-23185490)
chr1 (7-137)||(1366928-1367059)
chr1 (7-137)||(13913532-13913663)
chr1 (7-137)||(17168888-17169019)
chr1 (7-137)||(27559569-27559700)
chr1 (7-137)||(40501840-40501971)
chr1 (7-137)||(9173073-9173204)
chr1 (7-122)||(4971668-4971784)
chr1 (7-130)||(50881369-50881493)
chr1 (7-96)||(9181055-9181145)
chr1 (7-106)||(44655704-44655804)
chr1 (7-113)||(51607490-51607597)
chr1 (19-106)||(27906779-27906867)
chr1 (7-90)||(5027528-5027612)
chr1 (53-106)||(34247011-34247064)
chr1 (7-74)||(14146295-14146363)
chr1 (7-74)||(6771786-6771854)
chr1 (7-74)||(3406413-3406481)
chr1 (7-74)||(3440339-3440407)
chr1 (7-74)||(16140050-16140118)
chr1 (7-74)||(41697187-41697255)
chr1 (58-96)||(39134849-39134887)
[»] chr7 (19 HSPs)
chr7 (8-137)||(24525736-24525866)
chr7 (7-122)||(8171589-8171705)
chr7 (7-117)||(20091331-20091442)
chr7 (7-137)||(47985020-47985151)
chr7 (7-131)||(23551121-23551246)
chr7 (13-117)||(25010374-25010479)
chr7 (7-117)||(38414926-38415037)
chr7 (7-117)||(48983894-48984005)
chr7 (7-137)||(10329460-10329591)
chr7 (7-137)||(19692015-19692146)
chr7 (7-106)||(18776816-18776916)
chr7 (7-122)||(8239621-8239739)
chr7 (7-94)||(29077184-29077272)
chr7 (53-106)||(40357455-40357508)
chr7 (7-74)||(10955468-10955536)
chr7 (7-74)||(12596337-12596405)
chr7 (7-53)||(9021850-9021896)
chr7 (59-96)||(17800348-17800385)
chr7 (60-97)||(26917810-26917847)
[»] scaffold0039 (1 HSPs)
scaffold0039 (7-139)||(106457-106590)
[»] chr2 (17 HSPs)
chr2 (7-131)||(10762616-10762741)
chr2 (7-122)||(9045964-9046080)
chr2 (7-130)||(29939913-29940037)
chr2 (7-137)||(26716048-26716179)
chr2 (7-137)||(27506791-27506922)
chr2 (7-106)||(6964958-6965058)
chr2 (7-117)||(24410376-24410488)
chr2 (7-106)||(3155168-3155268)
chr2 (7-106)||(4505845-4505945)
chr2 (53-137)||(8327586-8327670)
chr2 (7-106)||(12337499-12337599)
chr2 (7-106)||(8907130-8907230)
chr2 (11-74)||(3952989-3953053)
chr2 (58-105)||(29694312-29694359)
chr2 (58-96)||(24035672-24035710)
chr2 (58-96)||(37182607-37182645)
chr2 (58-96)||(38400735-38400773)
[»] scaffold0070 (1 HSPs)
scaffold0070 (7-122)||(1279-1395)
[»] scaffold0003 (1 HSPs)
scaffold0003 (248-313)||(290353-290419)
[»] scaffold0001 (1 HSPs)
scaffold0001 (9-74)||(181903-181969)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 1e-43; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 610 - 755
Target Start/End: Original strand, 30976457 - 30976603
Alignment:
Q  610 aagttatataaaaggaggtttggagggtgt-ttaattagaagccagaaagaaaaggaaaactacattttaatactaaaatcaccccattttgtgtcaatc 708  Q
    |||||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||    
T  30976457 aagttatataaaaggaagtttggagggtgtgttaataagaagctagaaagaaaaggaaaactacattttaatactaaaaccacccaattttttgtccatc 30976556  T
Q  709 ataaaaatcaacaccaatttcacaaagatacaaatcaagtcatactc 755  Q
     ||||| ||||||||||||| |||||||||| || ||||||||||||    
T  30976557 ttaaaagtcaacaccaattttacaaagataccaaacaagtcatactc 30976603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 610 - 755
Target Start/End: Original strand, 30982896 - 30983042
Alignment:
Q  610 aagttatataaaaggaggtttggagggtgt-ttaattagaagccagaaagaaaaggaaaactacattttaatactaaaatcaccccattttgtgtcaatc 708  Q
    |||||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||    
T  30982896 aagttatataaaaggaagtttggagggtgtgttaataagaagctagaaagaaaaggaaaactacattttaatactaaaaccacccaattttttgtccatc 30982995  T
Q  709 ataaaaatcaacaccaatttcacaaagatacaaatcaagtcatactc 755  Q
     ||||| ||||||||||||| |||||||||| || ||||||||||||    
T  30982996 ttaaaagtcaacaccaattttacaaagataccaaacaagtcatactc 30983042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 610 - 755
Target Start/End: Original strand, 30989060 - 30989206
Alignment:
Q  610 aagttatataaaaggaggtttggagggtgt-ttaattagaagccagaaagaaaaggaaaactacattttaatactaaaatcaccccattttgtgtcaatc 708  Q
    |||||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||    
T  30989060 aagttatataaaaggaagtttggagggtgtgttaataagaagctagaaagaaaaggaaaactacattttaatactaaaaccacccaattttttgtccatc 30989159  T
Q  709 ataaaaatcaacaccaatttcacaaagatacaaatcaagtcatactc 755  Q
     ||||| ||||||||||||| |||||||||| || ||||||||||||    
T  30989160 ttaaaagtcaacaccaattttacaaagataccaaacaagtcatactc 30989206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 17354009 - 17353878
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||||| |||||||||| ||  || ||||||| |||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  17354009 atatatgcggtacacccaaatgtgaaaatgactatcgtatacatgatgaacccccacctaacaccaaaagcaagaggacctaattctaatagacctaaaa 17353910  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| |||| |||||||| |||||    
T  17353909 ggctaaaacaaggggacagaaaatggctgggg 17353878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 27788739 - 27788870
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||| |||||   ||||||    
T  27788739 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagatgacctaattttaataggcctaaaa 27788838  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||| ||| |||| |||||||| |||||    
T  27788839 gactaaaataaggggacagaaaatggttgggg 27788870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 19737743 - 19737867
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||| | |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||| ||||||| ||||||    
T  19737743 atatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattttaataatcctaaaa 19737842  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  19737843 ggctaaaacaagaggacagaaaatg 19737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 19987209 - 19987085
Alignment:
Q  14 cggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaaa 112  Q
    ||||||||||||| ||||||||| ||||  | ||||| || || ||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  19987209 cggtacacccaaatgtgaaaatggttaccatatacataaggaatccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaaggctaaa 19987110  T
Q  113 acaagaggacggaaaatggatgggg 137  Q
    ||||| ||||||||||||| |||||    
T  19987109 acaaggggacggaaaatggctgggg 19987085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 20711771 - 20711902
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| |||||||| ||||||  ||||||||||||||||||||||||||   ||||||    
T  20711771 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccatctaacattaaaagcaagatgacctaattctaataggcctaaaa 20711870  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |  ||||||||| |||| |||||||| |||||    
T  20711871 gattaaaacaaggggacagaaaatggctgggg 20711902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 28075838 - 28075707
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||| ||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| |||||||||||||||    |||||    
T  28075838 atatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaaacaagaggacctaattctaataggcataaaa 28075739  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    ||||||||||||  ||| |||||||| |||||    
T  28075738 ggctaaaacaaggagacagaaaatggctgggg 28075707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 34397912 - 34397781
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||| |||||| ||||||| ||  ||  ||||||| |||| |||| ||||||||||||||||| |||||||||||||||   ||||||    
T  34397912 atatatgcggtacacctaaaggtaaaaatgactatcgtaaacatgaggaacctccacttaacaccaaaagcaagaagacctaattctaataggcctaaaa 34397813  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    ||||||||||||||||| |||||||| |||||    
T  34397812 ggctaaaacaagaggacagaaaatggttgggg 34397781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 398 - 488
Target Start/End: Original strand, 30940634 - 30940724
Alignment:
Q  398 tttggacagcggttacgcagcacatcacatgtgttgtttatgtaattacaaaaggactcattcaaatttgccaatatttagtgttgtatga 488  Q
    |||||||||||||||| | |||||||||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |||||    
T  30940634 tttggacagcggttacaccgcacatcacatgagttgtttatgtaattgccaaaagactcattcaaatttgccaatatttagtgttctatga 30940724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 13727450 - 13727550
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  13727450 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 13727549  T
Q  106 g 106  Q
    |    
T  13727550 g 13727550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 21479549 - 21479449
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  21479549 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 21479450  T
Q  106 g 106  Q
    |    
T  21479449 g 21479449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 33774172 - 33774072
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||||| |||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  33774172 atatatgcggtacacccaaatgtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 33774073  T
Q  106 g 106  Q
    |    
T  33774072 g 33774072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 235277 - 235400
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||| | |||||||||||| ||||||||| ||| || |||||||| |||||||||| |||||||||||||||| |||||||||||||||   ||||||    
T  235277 atatataccgtacacccaaagatgaaaatgactaccgtatacatgagaaacccccacc-aacaccaaaagcaagaggacctaattctaataggcctaaaa 235375  T
Q  106 ggctaaaacaagaggacggaaaatgg 131  Q
    | |||||||||| |||| ||||||||    
T  235376 gactaaaacaag-ggacagaaaatgg 235400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 21280600 - 21280500
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||| ||||||| ||| || |||||||| ||| ||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  21280600 atatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaactcccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 21280501  T
Q  106 g 106  Q
    |    
T  21280500 g 21280500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 754 - 881
Target Start/End: Original strand, 30941122 - 30941241
Alignment:
Q  754 tcatactccatttgttttgacttttacacatagaatgtgggtggtaaccccctttcttatgctaagtaggccatctcaaaattctacttaattaccttac 853  Q
    |||||||||||| | ||||||||||||||||| |||||||    || | || |||||||||| ||||||||||||||||||||||||    |||||||||    
T  30941122 tcatactccattcggtttgacttttacacataaaatgtgg----tagcaccttttcttatgccaagtaggccatctcaaaattctac----ttaccttac 30941213  T
Q  854 ttcttaggtccttttctacatccttttc 881  Q
     || ||| |||| |||||| ||||||||    
T  30941214 ctcctagttcctcttctacttccttttc 30941241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 548 - 616
Target Start/End: Original strand, 30940749 - 30940817
Alignment:
Q  548 atgacattaagacaaactaagtgaaggtgaattgtaccatcactaagagaaagtggtttaataagttat 616  Q
    |||||||||||||||||||||| ||| ||||||||| || ||||||||||||  || ||||||||||||    
T  30940749 atgacattaagacaaactaagttaagatgaattgtagcagcactaagagaaaagggattaataagttat 30940817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 3567250 - 3567206
Alignment:
Q  248 acatattattgttataattattagaacaaaaatgaaagggatccc 292  Q
    ||||||||||||||  |||||||||||||||||||||||||||||    
T  3567250 acatattattgttactattattagaacaaaaatgaaagggatccc 3567206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 24711050 - 24711118
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    ||||||| ||||||| || |||||||||||| ||| || ||||||| ||||||||||||||||||||||    
T  24711050 atatatgtggtacactcagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 24711118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 548 - 611
Target Start/End: Original strand, 30976371 - 30976434
Alignment:
Q  548 atgacattaagacaaactaagtgaaggtgaattgtaccatcactaagagaaagtggtttaataa 611  Q
    |||| ||||||||||||||||| ||| ||||||||| || |||||||||||| ||| |||||||    
T  30976371 atgatattaagacaaactaagttaagctgaattgtagcagcactaagagaaaatggattaataa 30976434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 548 - 611
Target Start/End: Original strand, 30982810 - 30982873
Alignment:
Q  548 atgacattaagacaaactaagtgaaggtgaattgtaccatcactaagagaaagtggtttaataa 611  Q
    |||| ||||||||||||||||| ||| ||||||||| || |||||||||||| ||| |||||||    
T  30982810 atgatattaagacaaactaagttaagctgaattgtagcagcactaagagaaaatggattaataa 30982873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 548 - 611
Target Start/End: Original strand, 30988974 - 30989037
Alignment:
Q  548 atgacattaagacaaactaagtgaaggtgaattgtaccatcactaagagaaagtggtttaataa 611  Q
    |||| ||||||||||||||||| ||| ||||||||| || |||||||||||| ||| |||||||    
T  30988974 atgatattaagacaaactaagttaagctgaattgtagcagcactaagagaaaatggattaataa 30989037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 30832575 - 30832643
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaa 74  Q
    ||||||| |||||||||| || ||||||||| ||| || | |||||| |||||||||||||||||||||    
T  30832575 atatatgtggtacacccagagatgaaaatgactaccgtatgcatgaggaacccccacctaacaccaaaa 30832643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 8e-42; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 34027636 - 34027505
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  34027636 atatatgcggtacacccaaaggtgaaaatgactacggtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 34027537  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| |||| |||||||| |||||    
T  34027536 ggctaaaacaaggggacagaaaatggctgggg 34027505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 38352311 - 38352436
Alignment:
Q  13 gcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaa 111  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  38352311 gcggtacacccaaaggtgaaaatgactaccgtgtacatgaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaaggctaa 38352410  T
Q  112 aacaagaggacggaaaatggatgggg 137  Q
    |||||| |||| |||||||| |||||    
T  38352411 aacaaggggacagaaaatggctgggg 38352436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 34768624 - 34768740
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  34768624 atatatgcggtacacccagaggtgaaaatgattaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 34768723  T
Q  106 ggctaaaacaagaggac 122  Q
    |||||||||||||||||    
T  34768724 ggctaaaacaagaggac 34768740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 40089573 - 40089448
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||| |||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  40089573 atatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 40089474  T
Q  106 ggctaaaacaagaggacggaaaatgg 131  Q
    |||||||||||| |||| ||||||||    
T  40089473 ggctaaaacaaggggacagaaaatgg 40089448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 47129044 - 47128920
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||| ||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  47129044 atatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 47128945  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  47128944 ggctaaaacaagaggacagaaaatg 47128920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 37777273 - 37777396
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||||   ||||||    
T  37777273 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaaccctcaactaacaccaaaagcaagatgacctaattctaataggcctaaaa 37777372  T
Q  106 ggctaaaacaagaggacggaaaat 129  Q
    |||||||||||| |||| ||||||    
T  37777373 ggctaaaacaaggggacagaaaat 37777396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 19498560 - 19498430
Alignment:
Q  8 tatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    ||||||||||||| |||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   |||||||    
T  19498560 tatatgcggtacagccaaaggtgaaaatgactactgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 19498461  T
Q  107 gctaaaacaagaggacggaaaatggatgggg 137  Q
    ||||||||||| |||| || ||||| |||||    
T  19498460 gctaaaacaaggggacagataatggctgggg 19498430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 24969488 - 24969363
Alignment:
Q  13 gcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaa 111  Q
    ||||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| || ||||||||||||   ||||||||||||    
T  24969488 gcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggatctaattctaataggcctaaaaggctaa 24969389  T
Q  112 aacaagaggacggaaaatggatgggg 137  Q
    |||||| |||| |||||||| |||||    
T  24969388 aacaaggggacagaaaatggctgggg 24969363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 10978957 - 10978833
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| | |||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  10978957 atatatgcggtacacccagaagtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 10978858  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    |||||||||||||| || |||||||    
T  10978857 ggctaaaacaagagaacagaaaatg 10978833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 23509848 - 23509972
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||| | |||||||||||| ||| ||  ||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  23509848 atatatgcggtacacctagaggtgaaaatgactaccgtagacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 23509947  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  23509948 ggctaaaacaagaggacagaaaatg 23509972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 16845078 - 16844953
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||  |||||||||| ||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  16845078 atatatgtagtacacccaacggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 16844979  T
Q  106 ggctaaaacaagaggacggaaaatgg 131  Q
    | |||||||||| |||| ||||||||    
T  16844978 gactaaaacaaggggacagaaaatgg 16844953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 35465164 - 35465040
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||| ||| |||||||| | ||| || |||||||| || |||||||||||||||||||||| |||||||||||||||||   ||||||    
T  35465164 atatatgcggtacacctaaaagtgaaaataactaccgtatacatgaggaatccccacctaacaccaaaagcaacatgacctaattctaataggcctaaaa 35465065  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  35465064 ggctaaaacaagaggacagaaaatg 35465040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 35779375 - 35779499
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| |||||  ||||||||| ||||||||||| || ||||||||||||   ||||||    
T  35779375 atatatgcggtacacccaaaggtgaaaatgattaccgtatacatgaggaaccttcacctaacatcaaaagcaagaggaactaattctaataggcctaaaa 35779474  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||| | |||||||    
T  35779475 ggctaaaacaagagggcagaaaatg 35779499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 48209297 - 48209173
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaa-cccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| | ||||| |||| ||| || |||||||||| ||||||||||||||||||| ||||| || |||||||||||||| ||| ||    
T  48209297 atatatgcggtacacccagatgtgaatatgactaccgtatacatgagaaacccccacctaacaccaaaatcaagaagaactaattctaataatcctataa 48209198  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  48209197 ggctaaaacaagaggacagaaaatg 48209173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 32128641 - 32128510
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaa-cccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || ||||| |||| ||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  32128641 atatatgcggtacacccaaaggtgaaaatgactaccgtatacataagaaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 32128542  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | || ||||||| ||||  ||||||| |||||    
T  32128541 gactgaaacaaggggacataaaatggctgggg 32128510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 43455581 - 43455712
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||| |||| |||| |||||||||| ||||   ||||||    
T  43455581 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccgaaagtaagaggacctaattcaaataggcctaaaa 43455680  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| |||| |||||||| |||||    
T  43455681 gactaaaacaaggggacagaaaatggctgggg 43455712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 54083292 - 54083417
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||| | ||||||| ||| || |||||||| |||||| |||||||||||||||||||| |||||||||||||||   ||||||    
T  54083292 atatatgcggtacacccaaagataaaaatgactaccgtatacatgaggaacccctacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 54083391  T
Q  106 ggctaaaacaagaggacggaaaatgg 131  Q
    ||||||||||||  ||| ||||||||    
T  54083392 ggctaaaacaaggagacagaaaatgg 54083417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 13460264 - 13460140
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||| ||||| | |||||||||| ||| || ||||| || ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  13460264 atatatgcggtatacccagatgtgaaaatgactaccgtatacataaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 13460165  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||| ||| |||||||    
T  13460164 ggctaaaacaagaagacagaaaatg 13460140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 2790791 - 2790922
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||   ||||||||||| |||||||||||||||   ||||||    
T  2790791 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaatggcaaaagcaagaggacctaattctaataggcctaaaa 2790890  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| ||||  ||||||| |||||    
T  2790891 gactaaaacaaggggacataaaatggctgggg 2790922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 38209641 - 38209741
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  38209641 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 38209740  T
Q  106 g 106  Q
    |    
T  38209741 g 38209741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 10428276 - 10428379
Alignment:
Q  28 gtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaaaacaagaggacggaa 126  Q
    |||||||||| ||| || |||||||| |||| |||||||||||||||| ||||| || |||||| ||||||| ||||||||||||||||||||||| |||    
T  10428276 gtgaaaatgactaccgtatacatgaggaacctccacctaacaccaaaatcaagaggaactaattataataatcctaaaaggctaaaacaagaggacagaa 10428375  T
Q  127 aatg 130  Q
    ||||    
T  10428376 aatg 10428379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 16882446 - 16882568
Alignment:
Q  8 tatatgcggtacacccaaaggtgaaaatgattacggtgtacat-gagaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    ||||| ||||||||| |||||||||||||| ||| || |  || | |||||| ||||||||||||||||||||| |||||||||||||||   |||||||    
T  16882446 tatatacggtacaccaaaaggtgaaaatgactaccgtatgtatggggaaccctcacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 16882545  T
Q  107 gctaaaacaagaggacggaaaat 129  Q
    ||||||||||| |||| ||||||    
T  16882546 gctaaaacaaggggacagaaaat 16882568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 55255314 - 55255226
Alignment:
Q  19 cacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    |||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  55255314 cacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 55255226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 54780834 - 54780771
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacac 69  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||    
T  54780834 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacac 54780771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 32915442 - 32915374
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    ||||||| |||||||||| |||| ||||||||||| || ||||||| ||||||||||||||||||||||    
T  32915442 atatatgtggtacacccagaggtaaaaatgattaccgtatacatgaggaacccccacctaacaccaaaa 32915374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 38870340 - 38870276
Alignment:
Q  248 acatattattgttataattattagaacaaaaatgaaagggatccc-tgtcatgttaattggttgctt 313  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||||||| |||||||    
T  38870340 acatattattgttattattattagaacaaaaatg--agggatcccatgtcatgttaatttgttgctt 38870276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 1105589 - 1105521
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaa 74  Q
    |||||||||||||||| | |||||||||||| |||  | |||||||| |||||||||||||||||||||    
T  1105589 atatatgcggtacacctagaggtgaaaatgactaccatatacatgagcaacccccacctaacaccaaaa 1105521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 37514716 - 37514648
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatg-agaacccccacctaacaccaaaa 74  Q
    ||||||||||||||| || |||||||||||| ||| || |||||| |||| ||||||||||||||||||    
T  37514716 atatatgcggtacactcagaggtgaaaatgactaccgtatacatgaagaatccccacctaacaccaaaa 37514648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 9578736 - 9578802
Alignment:
Q  53 gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaaaacaagaggac 122  Q
    |||||||||||||||||||||| |||||    |||||| ||||||| ||| |||||||||||||||||||    
T  9578736 gaacccccacctaacaccaaaatcaagaa---ctaattataataatcctataaggctaaaacaagaggac 9578802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 37746847 - 37746885
Alignment:
Q  58 cccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  37746847 cccacctaacaccaaaagcaagatgacccaattctaata 37746885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 36118584 - 36118621
Alignment:
Q  59 ccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36118584 ccacctaacaccaaaagcaagatgacccaattctaata 36118621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 5128892 - 5128960
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||| || |||||| |||||||||||| ||| || ||||||| ||||| ||||||||||||||||    
T  5128892 atatatgcagtgcacccagaggtgaaaatgactaccgtatacatgaggaacctccacctaacaccaaaa 5128960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 39655303 - 39655337
Alignment:
Q  6 catatatgcggtacacccaaaggtgaaaatgatta 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  39655303 catatatgcggtacacccaaaggtgaaaatcatta 39655337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 10917443 - 10917312
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| |||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  10917443 atatatgcggtacacccaaaggtgaaaatgactaccttatacatgaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 10917344  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| |||| |||||||| |||||    
T  10917343 ggctaaaacaaggggacagaaaatggctgggg 10917312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 42600834 - 42600702
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||| ||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  42600834 atatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaagacctaattctaataggcctaaaa 42600735  T
Q  106 ggctaaaacaagaggacggaaaatggatggggt 138  Q
    |||||||||||| |||| |||||||| ||||||    
T  42600734 ggctaaaacaaggggacagaaaatggctggggt 42600702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 13534737 - 13534861
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| |||||  | |||||||||||||| ||||||    
T  13534737 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagagaaactaattctaataatcctaaaa 13534836  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  13534837 ggctaaaacaagaggacagaaaatg 13534861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 13624277 - 13624401
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| |||||  | |||||||||||||| ||||||    
T  13624277 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagagaaactaattctaataatcctaaaa 13624376  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  13624377 ggctaaaacaagaggacagaaaatg 13624401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 41879233 - 41879109
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaa-cccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||| |||||||||||||||| ||| |  |||||||||| ||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  41879233 atatatgcggtacatccaaaggtgaaaatgactaccgaatacatgagaaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 41879134  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  41879133 ggctaaaacaagaggacagaaaatg 41879109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 45475869 - 45475745
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| || ||||||||||||   ||||||    
T  45475869 atatatgcggtacacccataggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggaactaattctaataggcctaaaa 45475770  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  45475769 ggctaaaacaagaggacagaaaatg 45475745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 23798312 - 23798443
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||||| |||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  23798312 atatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 23798411  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| |||| |||||||| |||||    
T  23798412 gactaaaacaaggggacagaaaatggttgggg 23798443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 23606680 - 23606796
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  23606680 atatatgcggtacacccaaaggtaaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 23606779  T
Q  106 ggctaaaacaagaggac 122  Q
    | |||||||||| ||||    
T  23606780 gactaaaacaaggggac 23606796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 30883381 - 30883281
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  30883381 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 30883282  T
Q  106 g 106  Q
    |    
T  30883281 g 30883281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 2952272 - 2952372
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| || ||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  2952272 atatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 2952371  T
Q  106 g 106  Q
    |    
T  2952372 g 2952372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 5860795 - 5860895
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaaccccca-cctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| |||  | |||||||||| ||||| ||||||||||||| ||||| || |||||||||||||| ||||||    
T  5860795 atatatgcggtacacccagaggtgaaaatgactaccatatacatgagaaaccccaacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 5860894  T
Q  106 g 106  Q
    |    
T  5860895 g 5860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 3048568 - 3048668
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||| | || ||||||||| ||| || |||| ||| ||||| ||||||||||||||| ||||| || |||||||||||||| ||||||    
T  3048568 atatatgcggtacacctagagatgaaaatgactaccgtatacacgaggaaccctcacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 3048667  T
Q  106 g 106  Q
    |    
T  3048668 g 3048668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 8646174 - 8646138
Alignment:
Q  60 cacctaacaccaaaagcaagatgacctaattctaata 96  Q
    |||||||||||||||||||||||||||||||| ||||    
T  8646174 cacctaacaccaaaagcaagatgacctaattcgaata 8646138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 8102964 - 8102918
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag 53  Q
    |||||||||||||||| |||||||||||| ||||| || ||||||||    
T  8102964 atatatgcggtacacctaaaggtgaaaatcattaccgtatacatgag 8102918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 34789989 - 34790027
Alignment:
Q  58 cccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  34789989 cccacctaacaccaaaagtaagatgacccaattctaata 34790027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 8102889 - 8102852
Alignment:
Q  59 ccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  8102889 ccacctaacaccaaaagcaagaggacccaattctaata 8102852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 5e-37; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 16198842 - 16198973
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||| ||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  16198842 atatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 16198941  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| |||| |||||||| |||||    
T  16198942 ggctaaaacaaggggacagaaaatggctgggg 16198973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 38869411 - 38869535
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaa-cccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  38869411 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgagaaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 38869510  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    | |||||||||| |||| |||||||    
T  38869511 gactaaaacaaggggacagaaaatg 38869535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 28822390 - 28822521
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  28822390 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgatgaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 28822489  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| ||||  ||||||| |||||    
T  28822490 gactaaaacaaggggacataaaatggttgggg 28822521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 16799375 - 16799491
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||| |||||||||||||||   ||||||    
T  16799375 atatatgcggtacacccaaaggtgaaaatgattaccgtatacatgaggaacccccacataacaccaaaagcaagaggacctaattctaatagacctaaaa 16799474  T
Q  106 ggctaaaacaagaggac 122  Q
    | |||||||||| ||||    
T  16799475 gactaaaacaaggggac 16799491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 9364343 - 9364212
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||||||||| ||||||||||| |||||||||||||||   ||||||    
T  9364343 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacatcaaaagcaagaggacctaattctaatagacctaaaa 9364244  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| ||||  ||||||| |||||    
T  9364243 gactaaaacaaggggacataaaatggctgggg 9364212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 16592122 - 16592243
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || || ||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  16592122 atatatgcggtacacccagaggtgaaaatgactaccgtatatatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 16592221  T
Q  106 ggctaaaacaagaggacggaaa 127  Q
    ||||||||||||| ||| ||||    
T  16592222 ggctaaaacaagatgacagaaa 16592243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 7670969 - 7670845
Alignment:
Q  14 cggtacacccaaaggtgaaaatgattacggtgtacatgaga-acccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaaa 112  Q
    |||||||||||||||||||||||| ||| || ||||||||  | |||||||||||||||||||||||| |||||||||||||||   |||||||||||||    
T  7670969 cggtacacccaaaggtgaaaatgactaccgtatacatgaggtatccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaggctaaa 7670870  T
Q  113 acaagaggacggaaaatggatgggg 137  Q
    ||||| |||| |||||||| |||||    
T  7670869 acaaggggacagaaaatggctgggg 7670845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 27079063 - 27078939
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||| |||||||||||||| ||| || |||||||| |||||||||||||||||||||   ||| || ||||||| |||||| ||||||    
T  27079063 atatatgcggtacacctaaaggtgaaaatgactactgtatacatgaggaacccccacctaacaccaaaatatagaggaactaattccaataatcctaaaa 27078964  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  27078963 ggctaaaacaagaggacagaaaatg 27078939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 40389584 - 40389715
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||| |||||||||||||||| ||| || |  ||||| |||||||||||||||| |||||||||| |||||||||||||||   ||||||    
T  40389584 atatatgcggtacatccaaaggtgaaaatgactaccgtatttatgaggaacccccacctaacactaaaagcaagaggacctaattctaataggcctaaaa 40389683  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| |||| |||||||| |||||    
T  40389684 ggctaaaacaaggggacagaaaatggctgggg 40389715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 30854381 - 30854266
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||| || |||||||||||| ||  || |||||||| |||||||||||||||||||||  |||| || |||||||||||||| ||||||    
T  30854381 atatatgcggtacactcagaggtgaaaatgactatcgtatacatgaggaacccccacctaacaccaaaat-aagaggaactaattctaataatcctaaaa 30854283  T
Q  106 ggctaaaacaagaggac 122  Q
    |||||||||||||||||    
T  30854282 ggctaaaacaagaggac 30854266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 34756414 - 34756514
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||| ||||| ||||| || |||||||||||||| ||||||    
T  34756414 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaacaaaatcaagaggaactaattctaataatcctaaaa 34756513  T
Q  106 g 106  Q
    |    
T  34756514 g 34756514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 27924134 - 27924003
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||| |||||||| ||||||| ||| || |||||||| ||| ||| ||||||||||||||||| | |||||||||||||||   ||||||    
T  27924134 atatatgcggtacatccaaaggtaaaaatgactaccgtatacatgaggaacgcccgcctaacaccaaaagcaaaaggacctaattctaataggcctaaaa 27924035  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | ||||||||||  ||| |||||||| |||||    
T  27924034 gactaaaacaaggagacagaaaatggttgggg 27924003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 15480137 - 15480205
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||||||||||||| |||||||||||| ||| || | ||||| ||||||||||||||||||||||    
T  15480137 atatatgcggtacacccagaggtgaaaatgactaccgtatgcatgaggaacccccacctaacaccaaaa 15480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 19523251 - 19523183
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||||||||||||| |||||||||||| |||  | ||||||| ||||||||||||||||||||||    
T  19523251 atatatgcggtacacccagaggtgaaaatgactaccatatacatgaggaacccccacctaacaccaaaa 19523183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 36187927 - 36187995
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaa 74  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| |||| ||||||||||||||||    
T  36187927 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgagaaacctccacctaacaccaaaa 36187995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 2274942 - 2274874
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||| ||||||||| |||||||||||| ||| || |||| || ||||||||||||||||||||||    
T  2274942 atatatgcagtacacccagaggtgaaaatgactaccgtatacacgaggaacccccacctaacaccaaaa 2274874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 22986606 - 22986719
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||||| ||| |          |||  |||| || |||||||||||||| ||||||     
T  22986606 atatatgcggtacacccataggtgaaaatgactaccgtatacatgagaaacccaa----------aaattaagaggaactaattctaataatcctaaaat 22986695  T
Q  107 gctaaaacaagaggacggaaaatg 130  Q
    |||||||||||||||| |||||||    
T  22986696 gctaaaacaagaggacagaaaatg 22986719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 7079605 - 7079561
Alignment:
Q  61 acctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||| |||||||||||||||||||||||||||  |||||||    
T  7079605 acctaacatcaaaagcaagatgacctaattctaataggtctaaaa 7079561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 23284110 - 23284156
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag 53  Q
    ||||||||||||||||||||| ||||||||| ||| || ||||||||    
T  23284110 atatatgcggtacacccaaagatgaaaatgactaccgtatacatgag 23284156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 5e-37; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 44708532 - 44708401
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  44708532 atatatccggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 44708433  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| ||||  ||||||| |||||    
T  44708432 ggctaaaacaaggggacataaaatggctgggg 44708401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 53506935 - 53507066
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaa-cccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  53506935 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgagaaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 53507034  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| ||||  ||||||| |||||    
T  53507035 ggctaaaacaaggggacataaaatggttgggg 53507066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 3953947 - 3954071
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| ||||||||||||  || || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  3953947 atatatgcggtacacccagaggtgaaaatgaaaaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 3954046  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    |||||||||||||| || |||||||    
T  3954047 ggctaaaacaagagaacagaaaatg 3954071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 34290687 - 34290818
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || || ||||| ||||||||||||||||||||| ||||| |||||||||||||||   ||||||    
T  34290687 atatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacccccacctaacaccaaaaacaagaggacctaattctaataggcctaaaa 34290786  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| ||||  ||||||| |||||    
T  34290787 ggctaaaacaaggggacataaaatggttgggg 34290818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 43207289 - 43207419
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||| | |||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  43207289 atatatgcggtacatc-aaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 43207387  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| |||| |||||||| |||||    
T  43207388 gactaaaacaaggggacagaaaatggctgggg 43207419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 54407209 - 54407331
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    |||||||||||||| |||||||||||||||| ||| || |||||   ||||||||||||||||||||||||||| |||||||||||||||   |||||||    
T  54407209 atatatgcggtacatccaaaggtgaaaatgactaccgtatacatagtaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaag 54407308  T
Q  107 gctaaaacaagaggacggaaaat 129  Q
    ||||||| ||| |||| ||||||    
T  54407309 gctaaaagaaggggacagaaaat 54407331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 8073389 - 8073504
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    |||||||||||||||||||| |||||||||| ||| || |||||||| | |||||| ||||||||||||||| | || ||||||||||||   |||||||    
T  8073389 atatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaaccccacataacaccaaaagcaataggaactaattctaataggcctaaaag 8073488  T
Q  107 gctaaaacaagaggac 122  Q
    ||||||||||||||||    
T  8073489 gctaaaacaagaggac 8073504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 9878738 - 9878869
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||  || ||||| || |||||||| ||||| |||||||||||| |||||||||||||||   ||||||    
T  9878738 atatatgcggtacacccaaaggtgaaaatgactatcgtatacataaggaacccccatctaacgccaaaagcaagaggacctaattctaataggcctaaaa 9878837  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| |||| |||||||| |||||    
T  9878838 gactaaaacaaggggacagaaaatggctgggg 9878869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 54619254 - 54619354
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  54619254 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 54619353  T
Q  106 g 106  Q
    |    
T  54619354 g 54619354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 48157188 - 48157063
Alignment:
Q  13 gcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaa 111  Q
    ||||||||||||||||||||||||| ||| || ||||||| |||||||||| ||||| ||||||||||| ||| |||||||| ||    |||||||||||    
T  48157188 gcggtacacccaaaggtgaaaatgactactgtatacatgaggaacccccacttaacatcaaaagcaagaggacgtaattctagtaggcttaaaaggctaa 48157089  T
Q  112 aacaagaggacggaaaatggatgggg 137  Q
    |||||| |||| |||||||| |||||    
T  48157088 aacaaggggacagaaaatggctgggg 48157063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 27078620 - 27078720
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaaccccc-acctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||| ||||| |||||||||||| ||| || |||||||||| |||| |||||||||||||| |||||||| |||||||||||||| ||||||    
T  27078620 atatatgcggtatacccagaggtgaaaatgactaccgtatacatgagaaacccctacctaacaccaaaatcaagatgaactaattctaataatcctaaaa 27078719  T
Q  106 g 106  Q
    |    
T  27078720 g 27078720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 27084417 - 27084517
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaaccccc-acctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||| ||||| |||||||||||| ||| || |||||||||| |||| |||||||||||||| |||||||| |||||||||||||| ||||||    
T  27084417 atatatgcggtatacccagaggtgaaaatgactaccgtatacatgagaaacccctacctaacaccaaaatcaagatgaactaattctaataatcctaaaa 27084516  T
Q  106 g 106  Q
    |    
T  27084517 g 27084517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 37168422 - 37168306
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||| |||| |||||||||||||||||| ||| || |||||||| ||| |||||||||||| |||||||||| ||||||||| |||||   ||||||    
T  37168422 atatatgtggtatacccaaaggtgaaaatgactaccgtatacatgaggaactcccacctaacactaaaagcaagaggacctaattataataggcctaaaa 37168323  T
Q  106 ggctaaaacaagaggac 122  Q
    |||||||||||| ||||    
T  37168322 ggctaaaacaaggggac 37168306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 50939292 - 50939416
Alignment:
Q  15 ggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaaaa 113  Q
    ||||||||||||||| ||||||| ||| || |||||||| ||||||| ||||||||||||||||| | |||||||||||||||   ||||||| ||||||    
T  50939292 ggtacacccaaaggtaaaaatgactaccgtatacatgaggaacccccgcctaacaccaaaagcaaaaggacctaattctaataggcctaaaagactaaaa 50939391  T
Q  114 caagaggacggaaaatggatggggt 138  Q
    ||||  ||| |||||||| ||||||    
T  50939392 caaggagacagaaaatggctggggt 50939416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 18372528 - 18372427
Alignment:
Q  13 gcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaa 111  Q
    ||||||||| || |||||||||||| ||| || |||||||| || ||||| |||||||||||| ||||| || |||||||||||||| ||||||||||||    
T  18372528 gcggtacacacagaggtgaaaatgactaccgtatacatgaggaatccccatctaacaccaaaatcaagaggaactaattctaataatcctaaaaggctaa 18372429  T
Q  112 aa 113  Q
    ||    
T  18372428 aa 18372427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 38681147 - 38681244
Alignment:
Q  10 tatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    ||||||||||| ||| |||||||||||| ||| || |||||||| || |||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  38681147 tatgcggtacatccagaggtgaaaatgactaccgtatacatgaggaaaccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 38681244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 21582826 - 21582758
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||||||||||||| |||||||||||| ||| || ||||||| ||||||||||||||||||||||    
T  21582826 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 21582758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 29620439 - 29620539
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||| | ||| |||||||||||| ||| || |||||||| |||||||||||||||||| || ||||| || |||||| ||||||| ||||||    
T  29620439 atatatgcggtatatccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccacaatcaagaggaactaattttaataatcctaaaa 29620538  T
Q  106 g 106  Q
    |    
T  29620539 g 29620539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 36716076 - 36716176
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgaga-acccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| ||||||||| ||  || || ||| ||||  |||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  36716076 atatatgcggtacacccagaggtgaaaacgaccaccgtatacgtgagggacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 36716175  T
Q  106 g 106  Q
    |    
T  36716176 g 36716176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 47467739 - 47467671
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    ||||||||| |||||||| |||||||||||| ||| || ||||||| ||||||||||||||||||||||    
T  47467739 atatatgcgatacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 47467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 29598086 - 29598049
Alignment:
Q  59 ccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29598086 ccacctaacaccaaaagcaagatgacctaattctaata 29598049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 53149365 - 53149433
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaa 74  Q
    ||||||||||||||| || || | ||||||| ||| || |||||||| |||||||||||||||||||||    
T  53149365 atatatgcggtacactcagagataaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 53149433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 28689487 - 28689525
Alignment:
Q  58 cccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  28689487 cccacctaacaccaaaagcaagatgatccaattctaata 28689525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 5e-37; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 19955780 - 19955649
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || || ||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  19955780 atatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 19955681  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| |||| |||||||| |||||    
T  19955680 ggctaaaacaaggggacagaaaatggctgggg 19955649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 44895707 - 44895580
Alignment:
Q  15 ggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaaaa 113  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||    
T  44895707 ggtacacccaaaggtgaaaatgattaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaggctaaaa 44895608  T
Q  114 caagaggacggaaaatggatggggtatt 141  Q
    |||  |||| |||||||| |||||||||    
T  44895607 caaagggacagaaaatggctggggtatt 44895580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 5316743 - 5316627
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  5316743 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 5316644  T
Q  106 ggctaaaacaagaggac 122  Q
    |||||||||||||||||    
T  5316643 ggctaaaacaagaggac 5316627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 23185490 - 23185366
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| || ||||||||||||   ||||||    
T  23185490 atatatgcggtacacccataggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggaactaattctaataggcctaaaa 23185391  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  23185390 ggctaaaacaagaggacagaaaatg 23185366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 1366928 - 1367059
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||| ||||||||| ||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  1366928 atatatgcggtacacccaaagatgaaaatgactaccgtatacacgaggaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 1367027  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| |||| |||||||| |||||    
T  1367028 gactaaaacaaggggacagaaaatggctgggg 1367059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 13913532 - 13913663
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaa-cccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||| ||| |||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||   ||||||    
T  13913532 atatatgcggtacacctaaaagtgaaaatgactaccgtatacatgagaaacccccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 13913631  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||  |||| |||||||| |||||    
T  13913632 ggctaaaacaatgggacagaaaatggttgggg 13913663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 17169019 - 17168888
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| |||  | |||||||| |||||| |||||||||||||||||||| |||||||||||||||   ||||||    
T  17169019 atatatgcggtacacccaaaggtgaaaatgactaccatatacatgaggaacccctacctaacaccaaaagcaagaagacctaattctaataggcctaaaa 17168920  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| |||| |||||||| |||||    
T  17168919 ggctaaaacaaggggacagaaaatggctgggg 17168888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 27559700 - 27559569
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||| ||| |||| |||||||||||||||   ||||||    
T  27559700 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccataagtaagaggacctaattctaataggcctaaaa 27559601  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| |||| |||||||| |||||    
T  27559600 ggctaaaacaaggggacagaaaatggctgggg 27559569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 40501840 - 40501971
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||| ||||||| ||| || ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||   ||||||    
T  40501840 atatatgcggtacacccaaaggtaaaaatgactaccgtatacatgaagaacctccacctaacaccaaaagcaagatgatctaattctaatagacctaaaa 40501939  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| |||| |||||||| |||||    
T  40501940 ggctaaaacaaggggacagaaaatggctgggg 40501971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 9173073 - 9173204
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||| |||||||||||||||| ||| || |||||||| |||||||||||||||||||||| |||| |||||||||||||||   ||||||    
T  9173073 atatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagtaagaggacctaattctaataggcctaaaa 9173172  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| |||| |||||||| |||||    
T  9173173 gactaaaacaaggggacagaaaatggctgggg 9173204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 4971668 - 4971784
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| | |||||||||| ||| || |||||||| ||||||||||||||||||||||||||| || ||||||||||||   ||||||    
T  4971668 atatatgcggtacacccataagtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggaactaattctaataggcctaaaa 4971767  T
Q  106 ggctaaaacaagaggac 122  Q
    |||||||||||||||||    
T  4971768 ggctaaaacaagaggac 4971784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 50881493 - 50881369
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||| | | |||||||||||| ||| || |||||||| |||| ||||||||||||||||  |||| || |||||||||||||| ||||||    
T  50881493 atatatgcggtacatctagaggtgaaaatgactacagtatacatgaggaacctccacctaacaccaaaattaagaggaactaattctaataatcctaaaa 50881394  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    ||||||||||||||||| |||||||    
T  50881393 ggctaaaacaagaggacagaaaatg 50881369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 9181055 - 9181145
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    |||||||||||||| |||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  9181055 atatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaata 9181145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 44655804 - 44655704
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||| ||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  44655804 atatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 44655705  T
Q  106 g 106  Q
    |    
T  44655704 g 44655704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 51607490 - 51607597
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||||| |||||||||| ||| || ||||||| |||| |||| |||| ||||||||||||| ||| |||||||||||   ||||||    
T  51607490 atatatgcggtacacccaaacgtgaaaatgactaccgtatacatgaggaactcccatctaataccaaaagcaagaggacataattctaataggcctaaaa 51607589  T
Q  106 ggctaaaa 113  Q
    ||||||||    
T  51607590 ggctaaaa 51607597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 27906779 - 27906867
Alignment:
Q  19 cacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    |||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| |||||||    
T  27906779 cacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaag 27906867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 5027612 - 5027528
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaatt 90  Q
    |||||||||||||||||| |||||||||||| |||  | || ||||| ||||||||||||||||||||||||||| || ||||||    
T  5027612 atatatgcggtacacccataggtgaaaatgactaccatatagatgaggaacccccacctaacaccaaaagcaagaggaactaatt 5027528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 34247064 - 34247011
Alignment:
Q  53 gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||||||    
T  34247064 gaacccccacctaacaccaaaatcaagatgaactaattctaataatcctaaaag 34247011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 14146363 - 14146295
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||||||||||||| || ||||||||| ||| || ||||||| ||||||||||||||||||||||    
T  14146363 atatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 14146295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 6771854 - 6771786
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||||||||||||| |||||||||||| ||| || |||| || ||||| ||||||||||||||||    
T  6771854 atatatgcggtacacccagaggtgaaaatgactaccgtatacacgaggaacctccacctaacaccaaaa 6771786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 3406481 - 3406413
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaa 74  Q
    |||||||| |||||| |  |||||||||||| ||| || |||||||| |||||||||||||||||||||    
T  3406481 atatatgcagtacactcggaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 3406413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 3440339 - 3440407
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaa 74  Q
    |||||||| |||||| |  |||||||||||| ||| || |||||||| |||||||||||||||||||||    
T  3440339 atatatgcagtacactcggaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 3440407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 16140118 - 16140050
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||||||||||| | |||||||||||| ||| || ||||||| ||| ||||||||||||| ||||    
T  16140118 atatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaatccccacctaacactaaaa 16140050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 41697187 - 41697255
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaa 74  Q
    |||||||| ||||| ||| | |||||||||| ||| || |||||||| |||||||||||||||||||||    
T  41697187 atatatgcagtacatccagaagtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 41697255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 39134849 - 39134887
Alignment:
Q  58 cccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  39134849 cccacctaacaccaaaagcaagaggacccaattctaata 39134887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 24525736 - 24525866
Alignment:
Q  8 tatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    ||||||||||||||||||| |||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   |||||||    
T  24525736 tatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaatatgcctaaaag 24525835  T
Q  107 gctaaaacaagaggacggaaaatggatgggg 137  Q
    ||||||||||| || | |||||||| |||||    
T  24525836 gctaaaacaagggggcagaaaatggctgggg 24525866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 8171589 - 8171705
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| || ||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  8171589 atatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 8171688  T
Q  106 ggctaaaacaagaggac 122  Q
    |||||||||||||||||    
T  8171689 ggctaaaacaagaggac 8171705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 20091331 - 20091442
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||| |||| |||||||||||||||   ||||||    
T  20091331 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagtaagaggacctaattctaataggcctaaaa 20091430  T
Q  106 ggctaaaacaag 117  Q
    ||||||||||||    
T  20091431 ggctaaaacaag 20091442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 47985020 - 47985151
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||||||||||||||||  || || |||||||| |||||||||||||||| |||||||||| |||||||||||||||   ||||||    
T  47985020 atatatgcggtacacccaaaggtgaaaatgaccaccgtatacatgaggaacccccacctaacacaaaaagcaagaggacctaattctaataggcctaaaa 47985119  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| |||| |||||||| |||||    
T  47985120 gactaaaacaaggggacagaaaatggctgggg 47985151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 23551121 - 23551246
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||| |||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  23551121 atatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 23551220  T
Q  106 ggctaaaacaagaggacggaaaatgg 131  Q
     ||||||||||| ||||  |||||||    
T  23551221 agctaaaacaaggggacaaaaaatgg 23551246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 25010479 - 25010374
Alignment:
Q  13 gcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaa 111  Q
    ||||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||    
T  25010479 gcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaggctaa 25010380  T
Q  112 aacaag 117  Q
    ||||||    
T  25010379 aacaag 25010374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 38414926 - 38415037
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||| ||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||||   ||||||    
T  38414926 atatatgtggtacacccaaaggtgaaaatgactactgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaa 38415025  T
Q  106 ggctaaaacaag 117  Q
    | ||||||||||    
T  38415026 gactaaaacaag 38415037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 48983894 - 48984005
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||| | ||| || |||||||| |||||||||||||||||||||| |||| ||| |||||||||||   ||||||    
T  48983894 atatatgcggtacacccaaaggtgaaaataactaccgtatacatgaggaacccccacctaacaccaaaagtaagaggacttaattctaataggcctaaaa 48983993  T
Q  106 ggctaaaacaag 117  Q
    ||||||||||||    
T  48983994 ggctaaaacaag 48984005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 10329460 - 10329591
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaa-cccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||| || | |||||||||||||||||| ||| || |||||||||| ||||||| ||||||||||||||||| |||||||||||||||    |||||    
T  10329460 atatatgaggaaaacccaaaggtgaaaatgactaccgtatacatgagaaacccccacttaacaccaaaagcaagaggacctaattctaataggcgtaaaa 10329559  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||| ||||  ||||||| |||||    
T  10329560 ggctaaaacaaggggacaaaaaatggctgggg 10329591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 19692146 - 19692015
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||| |||||||||||||| |   || |||||||| ||||| | ||||||||||||||||||| |||||||||||||||   ||||||    
T  19692146 atatatgcggtacacctaaaggtgaaaatgactttcgtatacatgaggaaccctcgcctaacaccaaaagcaagaggacctaattctaataggcctaaaa 19692047  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| |||| |||||||| |||||    
T  19692046 gactaaaacaaggggacagaaaatggttgggg 19692015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 18776816 - 18776916
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaa-cccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| | |||||||||| ||| || |||||||||| ||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  18776816 atatatgcggtacacccagatgtgaaaatgactaccgtatacatgagaaacccccacctaacaccaaaaacaagaggaactaattctaataatcctaaaa 18776915  T
Q  106 g 106  Q
    |    
T  18776916 g 18776916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 8239739 - 8239621
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccc--cacctaacaccaaaagcaagatgacctaattctaataattctaa 103  Q
    ||||||| |||||||||||| |||||||||||||| || || ||||| ||||||  ||| ||||||||||||||||| |||||||||||||||   ||||    
T  8239739 atatatgtggtacacccaaatgtgaaaatgattaccgtatatatgaggaacccctccacttaacaccaaaagcaagaggacctaattctaataggcctaa 8239640  T
Q  104 aaggctaaaacaagaggac 122  Q
    |||||||||||||| ||||    
T  8239639 aaggctaaaacaaggggac 8239621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 29077272 - 29077184
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaa 94  Q
    |||||||||||||||| | |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || ||||||||||    
T  29077272 atatatgcggtacaccaagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaa 29077184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 40357455 - 40357508
Alignment:
Q  53 gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaag 106  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||||||    
T  40357455 gaacccccacctaacaccaaaatcaagatgaactaattctaataatcctaaaag 40357508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 10955536 - 10955468
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    ||||||||||||||| || |||||||||||| ||| || ||||||| ||||||||||||||||||||||    
T  10955536 atatatgcggtacactcagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 10955468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 12596337 - 12596405
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    ||||||| |||||||||| |||||||||||| ||| || | ||||| ||||||||||||||||||||||    
T  12596337 atatatgtggtacacccagaggtgaaaatgactaccgtatgcatgaggaacccccacctaacaccaaaa 12596405  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 9021850 - 9021896
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag 53  Q
    ||||||||||||||||||||||||||||| | ||| || ||||||||    
T  9021850 atatatgcggtacacccaaaggtgaaaatcactaccgtatacatgag 9021896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 17800348 - 17800385
Alignment:
Q  59 ccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  17800348 ccacctaacaccaaaagcaagaggacccaattctaata 17800385  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 26917810 - 26917847
Alignment:
Q  60 cacctaacaccaaaagcaagatgacctaattctaataa 97  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  26917810 cacctaacaccaaaagcaagaagacccaattctaataa 26917847  T

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Target: scaffold0039 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 106590 - 106457
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| ||||||| |||||||   ||||||    
T  106590 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaaatctaataggcctaaaa 106491  T
Q  106 ggctaaaacaagaggacggaaaatggatggggta 139  Q
    | |||||||||| ||||  ||||||| |||||||    
T  106490 gactaaaacaaggggacataaaatggctggggta 106457  T

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Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 10762616 - 10762741
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||| ||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||| |||||| |||||||||||||||   ||||||    
T  10762616 atatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaatgcaagaggacctaattctaataggcctaaaa 10762715  T
Q  106 ggctaaaacaagaggacggaaaatgg 131  Q
    |||||||||||| |||| ||||||||    
T  10762716 ggctaaaacaaggggacagaaaatgg 10762741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 9046080 - 9045964
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||| |||||||||| ||||||||||||||||  ||||||    
T  9046080 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacacaaaaagcaagaggacctaattctaataagcctaaaa 9045981  T
Q  106 ggctaaaacaagaggac 122  Q
    | |||||||||| ||||    
T  9045980 gactaaaacaaggggac 9045964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 29939913 - 29940037
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| |||| |||||||||||||||||||||| || ||||||||||||   ||||||    
T  29939913 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaaccaccacctaacaccaaaagcaagaggaactaattctaatagacctaaaa 29940012  T
Q  106 ggctaaaacaagaggacggaaaatg 130  Q
    || |||||||||||||| |||||||    
T  29940013 ggttaaaacaagaggacagaaaatg 29940037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 26716179 - 26716048
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||| ||||||||||  ||||||||||||||  |||||||    
T  26716179 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacacaaaaagcaagagaacctaattctaataggtctaaaa 26716080  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    | |||||||||| ||||  ||||||| |||||    
T  26716079 gactaaaacaaggggacataaaatggctgggg 26716048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 27506791 - 27506922
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||| ||||||||||||||| ||||||| ||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||   ||||||    
T  27506791 atatatgtggtacacccaaaggtaaaaatgactactgtatacatgaggaactcccacctaacaccaaaagcaagatgacctaattctaataggcctaaaa 27506890  T
Q  106 ggctaaaacaagaggacggaaaatggatgggg 137  Q
    ||||||||||||  ||| |||||||| |||||    
T  27506891 ggctaaaacaaggagacagaaaatggctgggg 27506922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 6965058 - 6964958
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||||||||||    
T  6965058 atatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataattctaaaa 6964959  T
Q  106 g 106  Q
    |    
T  6964958 g 6964958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 24410488 - 24410376
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag--aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaa 104  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||  | ||||||||||||||||||| ||||| ||||||||||||||    |||||    
T  24410488 atatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaaccccccacctaacaccaaaaacaagaggacctaattctaattggcctaaa 24410389  T
Q  105 aggctaaaacaag 117  Q
    |||||||||||||    
T  24410388 aggctaaaacaag 24410376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 3155268 - 3155168
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||| | |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  3155268 atatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 3155169  T
Q  106 g 106  Q
    |    
T  3155168 g 3155168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 4505945 - 4505845
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||| ||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  4505945 atatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 4505846  T
Q  106 g 106  Q
    |    
T  4505845 g 4505845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 8327670 - 8327586
Alignment:
Q  53 gaacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaaggctaaaacaagaggacggaaaatggatgggg 137  Q
    |||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||| |||| |||||||| |||||    
T  8327670 gaacccccacctaacaccaaaagcaagaggacctaattctaataggcctaaaaggctaaaacaaggggacagaaaatggctgggg 8327586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 12337499 - 12337599
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||| |||||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  12337499 atatatgtggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaataatcctaaaa 12337598  T
Q  106 g 106  Q
    |    
T  12337599 g 12337599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 8907130 - 8907230
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgagaa-cccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| |||| ||||||| ||| || |||||||||| ||||||||||||||||||| ||||| ||  ||||||||||||| ||||||    
T  8907130 atatatgcggtacacccagaggtaaaaatgactaccgtatacatgagaaacccccacctaacaccaaaatcaagaggaattaattctaataatcctaaaa 8907229  T
Q  106 g 106  Q
    |    
T  8907230 g 8907230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 3953053 - 3952989
Alignment:
Q  11 atgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||||||||| |||||||||||||||| || | ||||| ||||||||||||||||||||||    
T  3953053 atgcggtacacccagaggtgaaaatgattaccgtatgcatgaggaacccccacctaacaccaaaa 3952989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 29694359 - 29694312
Alignment:
Q  58 cccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    ||||||||||||||||||||||| |||| ||||||||||  |||||||    
T  29694359 cccacctaacaccaaaagcaagaggacccaattctaataggtctaaaa 29694312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 24035672 - 24035710
Alignment:
Q  58 cccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  24035672 cccacctaacactaaaagcaagaggacctaattctaata 24035710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 37182645 - 37182607
Alignment:
Q  58 cccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  37182645 cccacctaacagcaaaagcaagatgacccaattctaata 37182607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 38400773 - 38400735
Alignment:
Q  58 cccacctaacaccaaaagcaagatgacctaattctaata 96  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  38400773 cccacctaacaccaaaagcaagatgaccctattctaata 38400735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 1395 - 1279
Alignment:
Q  7 atatatgcggtacacccaaaggtgaaaatgattacggtgtacatgag-aacccccacctaacaccaaaagcaagatgacctaattctaataattctaaaa 105  Q
    |||||||||||||||||| || ||||||||| ||| || |||||||| ||||||||||||||||||||| ||||| || |||||| ||||||| ||||||    
T  1395 atatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaactaattttaataatcctaaaa 1296  T
Q  106 ggctaaaacaagaggac 122  Q
    || ||||||||||||||    
T  1295 ggttaaaacaagaggac 1279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 290419 - 290353
Alignment:
Q  248 acatattattgttataattattagaacaaaaatgaaagggatccc-tgtcatgttaattggttgctt 313  Q
    ||||||||||||| | |||||||||||| |||||||||||||||| ||||| ||||||| |||||||    
T  290419 acatattattgttgttattattagaacagaaatgaaagggatcccatgtcaggttaatttgttgctt 290353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 181969 - 181903
Alignment:
Q  9 atatgcggtacacccaaaggtgaaaatgattacggtgtacatga-gaacccccacctaacaccaaaa 74  Q
    |||||||||||| ||| |||||||||||| ||| || ||||||| ||||||||| ||||||||||||    
T  181969 atatgcggtacatccagaggtgaaaatgactaccgtatacatgaggaacccccatctaacaccaaaa 181903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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