View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587-Insertion-5 (Length: 555)
Name: NF5587-Insertion-5
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 7 - 555
Target Start/End: Complemental strand, 39280299 - 39279751
Alignment:
| Q |
7 |
acaaaagatccttggcttcttcaaaccttccactaacaacataaccattaatcaatgtattataaagcaccgtattagggttaggaattttgcttagcat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39280299 |
acaaaagatccttggcttcttcaaaccttccactaacaacataaccattaatcaatgtattataaagcaccgtattagggttaggaattttgcttagcat |
39280200 |
T |
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| Q |
107 |
ggcccttgcttcatcaactttccccatcctacacaaaccatgcatcaaataaccttgaataagagcatcagcggtgaaatctcgaagcagcattcgatcg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39280199 |
ggcccttgcttcatcaactttccccatcctacacaaaccatgcatcaaataaccttgaataagagcatctgcggtgaaatctcgaagcagcattcgatcg |
39280100 |
T |
|
| Q |
207 |
tgcaacttcgctgcctcatgaatccgaccagccttgcaaagtccgtgaataagatcatcgaaggtctgaacatcatgttcacagcccatcaaaaacattt |
306 |
Q |
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| T |
39280099 |
tgcaactttgctgcctcatgaatccgaccagccttgcaaagtccgtgaataacatcattgaaggtctgaacatcaggttcacagcccatcaaaaacattt |
39280000 |
T |
|
| Q |
307 |
cctccggcagcttcatagcttcattcactctattattttcagaaagtgcatgaatcaacgtttggtaaataatcgaattcggaacacaaccatgctttgt |
406 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
39279999 |
cctccagtagcttcatagcttcattcactctattattttcagaaagtgcatgaatcaacatttggtaaataattgaattcggaacacaaccatgctttgt |
39279900 |
T |
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| Q |
407 |
catatcccttaaaagagaacaagccgaatcaacctcgttgaccatacaaaaagctttcataaccacaccaaacgtataaacagtcggcgaaatacctcta |
506 |
Q |
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| T |
39279899 |
catatcccttaaaagagaacaagccgaatcaacctcgttgaccatacaaaaagctttcataaccacaccaaacgtataaacagtcggcgaaatacctcta |
39279800 |
T |
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| Q |
507 |
ctcaacatatcnnnnnnnncatttggcgccaccttaggacaattcccag |
555 |
Q |
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| T |
39279799 |
ctcaacatatcataaaaaacatttggcgccaccttaggacaattcccag |
39279751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 555
Target Start/End: Original strand, 17350029 - 17350577
Alignment:
| Q |
11 |
aagatccttggcttcttcaaaccttccactaacaacataaccattaatcaatgtattataaagcaccgtattagggttaggaattttgcttagcatggcc |
110 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| || || |
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| T |
17350029 |
aagatccttggcttcttcaaaccttccactagcaacatatccattaatcaatgtattataaagcacagtattagggttaggaatcttgcttaacaaaacc |
17350128 |
T |
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| Q |
111 |
cttgcttcatcaactttccccatcctacacaaaccatgcatcaaataaccttgaataagagcatcagcggtgaaatctcgaagcagcattcgatcgtgca |
210 |
Q |
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|| ||||||||||||| |||||||||||||||||| |||||||| |||| | ||| |||||||||| ||||||| | |||||||||||||||| ||| |
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| T |
17350129 |
ctcgcttcatcaacttgccccatcctacacaaaccgggcatcaaacaaccataaattagagcatcagtggtgaaaccatgaagcagcattcgatcaagca |
17350228 |
T |
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| Q |
211 |
acttcgctgcctcatgaatccgaccagccttgcaaagtccgtgaataagatcatcgaaggtctgaacatcatgttca-----cagcccatcaaaaacatt |
305 |
Q |
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| T |
17350229 |
acttcgctgcctcatgaatccgaccggccttacaaagtccatgaataacatcattgaaagtctgaacatccggttcacaacccaacccatcaaaaacatt |
17350328 |
T |
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| Q |
306 |
tcctccggcagcttcatagcttcattcactctattattttcagaaagtgcatgaatcaacgtttggtaaataatcgaattcggaacacaaccatgctttg |
405 |
Q |
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|||||| | | |||||| |||||||||||||| || ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17350329 |
tcctccagtaacttcatcgcttcattcactctgttgttttcagaaagcgcgtgaatcaatgtttggtaaataatcgaattcggaacacaaccatgctttg |
17350428 |
T |
|
| Q |
406 |
tcatatcccttaaaagagaacaagccgaatcaacctcgttgaccatacaaaaagctttcataaccacaccaaacgtataaacagtcggcgaaatacctct |
505 |
Q |
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|||||||||||||||| ||||| |||||||||||| |||| ||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
17350429 |
tcatatcccttaaaagcgaacacgccgaatcaacc-cgttaaccatacaaaacgctttcataacaataccaaacgtatgaacagtcggcgaaatacctct |
17350527 |
T |
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| Q |
506 |
actcaacatatcnnnnnnnncatttggcgccaccttaggacaattcccag |
555 |
Q |
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|||||||||||| |||| |||||||||||||||||||| |||| |
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| T |
17350528 |
actcaacatatcataaaaaacattcggcgccaccttaggacaatttccag |
17350577 |
T |
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