View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587-Insertion-6 (Length: 505)
Name: NF5587-Insertion-6
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 27328760 - 27328409
Alignment:
| Q |
8 |
gttttagcaggtggtccctcaatatcaaaccaccaaattcatgttcttttaannnnnnnggtacaacaccaaattcatgttctacttaaactaggttatg |
107 |
Q |
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| T |
27328760 |
gttttagcaggtggtccctcaatatcaaaccaccaaattcatgttcttttt-tttttttggtacaacaccaaattcatgttctacttaaactaggttatg |
27328662 |
T |
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| Q |
108 |
cctggtatgtgttagttgtttgatataaaagcaattatcacgtcctatgcaaccaaccataattattacgaagctagaaattttaggagtggtctgacac |
207 |
Q |
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| T |
27328661 |
cctggtatgtgctagttgtttgatataaaagcaattatcacgtcctatgcaaccaaccataattattacgaagctagaaattttaggagtggttggacac |
27328562 |
T |
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| Q |
208 |
acgagtgataacagatccttactgacctaagatcttaagtttggaggattactgggtggtggacaatgagcagcatctcaacaagacgatgtattgtatt |
307 |
Q |
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| T |
27328561 |
acgagtgataactgatccttccagacctaagatcttaagtttgaaggattactgggtggtggacaatgagcagcatctcaacaagacgatgtattgtatt |
27328462 |
T |
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| Q |
308 |
tacaaaccgacgatcaagcaagaaagtgttgtgaatgtgaggttttaggttta |
360 |
Q |
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| T |
27328461 |
tacaaaccgacgatcaagcaagaaagtgttgtgaatgtgaggttttagcttta |
27328409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 396 - 505
Target Start/End: Complemental strand, 27328414 - 27328304
Alignment:
| Q |
396 |
gctttatagtggaagaattaatgttttaggatccaaaatcctgg-----acagctgtctgaatggacagctgcaaacaatcttgataatatgatcaacga |
490 |
Q |
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| T |
27328414 |
gctttatagtggaggaattaatgttttaggatccaaaatcctagcttagacagctgttcg----gacagctgcaaacaatcttgataatatgatcaacga |
27328319 |
T |
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| Q |
491 |
tcatgttcgagtgtg |
505 |
Q |
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| T |
27328318 |
tcatgttcgagtgtg |
27328304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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