View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5587_high_10 (Length: 407)

Name: NF5587_high_10
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5587_high_10
NF5587_high_10
[»] chr4 (2 HSPs)
chr4 (1-401)||(31151663-31152065)
chr4 (60-112)||(29011514-29011566)
[»] chr7 (1 HSPs)
chr7 (3-122)||(29428861-29428980)
[»] chr8 (2 HSPs)
chr8 (3-122)||(20989659-20989778)
chr8 (61-103)||(38679751-38679793)
[»] chr6 (1 HSPs)
chr6 (56-122)||(19694618-19694684)
[»] chr3 (4 HSPs)
chr3 (60-158)||(17575753-17575851)
chr3 (56-113)||(11414563-11414620)
chr3 (60-104)||(40026108-40026152)
chr3 (61-122)||(35231873-35231934)
[»] chr1 (3 HSPs)
chr1 (59-122)||(23473767-23473830)
chr1 (48-131)||(50109050-50109133)
chr1 (61-122)||(35306817-35306878)
[»] scaffold0011 (1 HSPs)
scaffold0011 (4-122)||(9278-9396)
[»] chr5 (2 HSPs)
chr5 (65-122)||(15021740-15021797)
chr5 (60-160)||(32233012-32233112)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 31151663 - 31152065
Alignment:
Q  1 cattgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151663 cattgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatggaat 31151762  T
Q  101 ggaacataatggaattcattccgtccgatattacacattccatcaattttttattccctcaatgcggggtgtatcggaatagagtctcataattacataa 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151763 ggaacataatggaatccattccgtccgatattacacattccatcaattttttattccctcaatgcggggtgtatcggaatagagtctcataattacataa 31151862  T
Q  201 ttgctactttacctctattctcttttttcatcgaaccattgattctgctcc--nnnnnnnnccgtttacctttcaagaagtttcagttagccaagactat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||| ||||||||||||||||    
T  31151863 ttgctactttacctctattctcttttttcatcgaaccattgattctgctcctttttttttttcgtttacctttcaagaagtttaagttagccaagactat 31151962  T
Q  299 ttggatcagttgtttgatttactatggttgctatcggaagaaatagatttacaagatttactgttaagggtaaaaacggaatagaaaagttataacttat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151963 ttggatcagttgtttgatttactatggttgctatcggaagaaatagatttacaagatttactgttaagggtaaaaacggaatagaaaagttataacttat 31152062  T
Q  399 ttt 401  Q
    |||    
T  31152063 ttt 31152065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 29011514 - 29011566
Alignment:
Q  60 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatgg 112  Q
    |||||||||||| |||||  ||||||||||| |||||| ||||||||| ||||    
T  29011514 attccattgtttgaattttaaaaaaatgaatggaatgggatggaacatgatgg 29011566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 29428861 - 29428980
Alignment:
Q  3 ttgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatgg 102  Q
    ||||||| |||| ||||| ||||| |||| | ||| | |||||||||||| |||||  |||||||||||  ||||||||||||||||| ||||||||||     
T  29428861 ttgtttggattggtggaacatgatggaataggatggaatgaagtggtatggagttatgttccattgtttggatttgtaaaaaatgaatggaatggaatga 29428960  T
Q  103 aacataatggaattcattcc 122  Q
    ||||| ||||||| ||||||    
T  29428961 aacatgatggaatccattcc 29428980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 20989659 - 20989778
Alignment:
Q  3 ttgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatgg 102  Q
    ||||||| |||| ||||||||||| |||| ||||| | ||| |||| ||   ||||  ||||||||||||  ||| |||||||||||| |||||||||||    
T  20989659 ttgtttggattgatggaatatgatggaatagaatggaatgaggtggaatattgttatgttccattgtttaggtttataaaaaatgaatggaatggaatgg 20989758  T
Q  103 aacataatggaattcattcc 122  Q
    ||||  ||||||| ||||||    
T  20989759 aacaagatggaatccattcc 20989778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 38679751 - 38679793
Alignment:
Q  61 ttccattgtttaaatttgtaaaaaatgaatagaatggaatgga 103  Q
    |||||||||||   |||||||||||||||||||||||||||||    
T  38679751 ttccattgtttggttttgtaaaaaatgaatagaatggaatgga 38679793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 19694684 - 19694618
Alignment:
Q  56 ttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 122  Q
    ||||||||||||||||  ||||| ||||||| ||| ||| |||||||||||||||||||| ||||||    
T  19694684 ttaaattccattgtttggatttgcaaaaaattaatggaagggaatggaacataatggaatccattcc 19694618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 17575753 - 17575851
Alignment:
Q  60 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatattacacattccatcaattttttattccc 158  Q
    |||| ||||||| |||||||||||||| ||||   || ||||||||||||||||||||||||| ||  |||| || || ||| ||||||||| ||||||    
T  17575753 attctattgtttgaatttgtaaaaaatcaataatgtgaaatggaacataatggaattcattccatctcatatcactcaatccttcaatttttcattccc 17575851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 11414563 - 11414620
Alignment:
Q  56 ttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatgga 113  Q
    |||||||| |||||||  ||||||||| | ||||||||||||||||||||||||||||    
T  11414563 ttaaattctattgtttggatttgtaaatagtgaatagaatggaatggaacataatgga 11414620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 40026152 - 40026108
Alignment:
Q  60 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaa 104  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  40026152 attccattgtttgattttgtaaaaaatgaatagaatggaatggaa 40026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 35231934 - 35231873
Alignment:
Q  61 ttccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 122  Q
    |||||||||||| |||| |||||| || || |||||| ||||||||| ||||||| ||||||    
T  35231934 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattcc 35231873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 23473767 - 23473830
Alignment:
Q  59 aattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 122  Q
    |||||||||||||  || |||||||| ||||| |||||||||||||||| ||||||| ||||||    
T  23473767 aattccattgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattcc 23473830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 50109133 - 50109050
Alignment:
Q  48 gtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatat 131  Q
    ||||| |||||  |||||||||||  |||||||| |||||||| || ||||||||||||| ||||||| |||||| ||| ||||    
T  50109133 gtatggagttatgttccattgtttggatttgtaagaaatgaatggagtggaatggaacatgatggaatccattccatcccatat 50109050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 35306878 - 35306817
Alignment:
Q  61 ttccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 122  Q
    |||||||||||| |||| |||||| || || |||||| ||||||||| ||||||| ||||||    
T  35306878 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattcc 35306817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 9396 - 9278
Alignment:
Q  4 tgtttgaattgttggaatatgatagaatggaatgcagtgaagtggtatgaagttaaattccattgtttaaatttgtaaaaaatgaatagaatggaatgga 103  Q
    |||||| |||| |||||| |||| |||||||||| | || ||||| ||| | | | |||||||||||| |||||||||||  | ||| || |||||| ||    
T  9396 tgtttggattgatggaatgtgatggaatggaatggaatggagtgggatggaatcatattccattgtttgaatttgtaaaattttaatggagtggaattga 9297  T
Q  104 acataatggaattcattcc 122  Q
    | || ||||||| ||||||    
T  9296 atatgatggaatccattcc 9278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 15021740 - 15021797
Alignment:
Q  65 attgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 122  Q
    |||||||  |||||| ||||||||||  ||||| |||||||| |||||||||||||||    
T  15021740 attgttttgatttgttaaaaatgaatgaaatggtatggaacacaatggaattcattcc 15021797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 32233012 - 32233112
Alignment:
Q  60 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatattacacattccatcaattttttattccct 159  Q
    ||||||||||||  ||||| ||||| ||||| || |||||||||| | ||||||| ||||||| ||| |||  || ||  || ||||||||| |||||||    
T  32233012 attccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccct 32233111  T
Q  160 c 160  Q
    |    
T  32233112 c 32233112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University