View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5587_high_11 (Length: 392)
Name: NF5587_high_11
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 2045931 - 2045552
Alignment:
| Q |
1 |
agagacaaagagttacgtatataaacaagtat------gtggactcaaatcgttaatgagttgcaattatggtagaaatcttggagtgctacgaagcatt |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2045931 |
agagacaaagagttacgtatataaacaagtatatatatgtggactcaaatcgttaatgagttacaattatggtagaaatcttggagtgctacgaagcatt |
2045832 |
T |
|
| Q |
95 |
ggcatagacatggacaatggttttaacactgaaacatcgctaccattaataaatttgtgaaggtgaaaaacttgaatgcaatctcgtgtca----gtata |
190 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2045831 |
gccatagacatggacaatggttttaacactgaaacatcgctaccattaataaatttgcgaaggtgaaaaacttgaatgcaatctcgtgtcagtacgtata |
2045732 |
T |
|
| Q |
191 |
ggacaaagacatatgtaagatgattgatcttaaatattgatgttatatgtatatattgagagtttctgaattcgatagataattcttgatcaaactttac |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2045731 |
ggacaaagacatatgtaagatgattgatcttaaatattgatgtta----tatatattgagagtttctgaattcgataaatagttcttgatcaaactttac |
2045636 |
T |
|
| Q |
291 |
ttgttttttgacggaacttcatattttcatagcatttttattgagaatgaatggttaataaaataaaatagagttacacaaagt |
374 |
Q |
| |
|
|||| ||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2045635 |
ttgtctttggatcgaacttcatattttcatagcatttttatggagaatgaatggttaataaaataaaatagagttacacaaagt |
2045552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 2049756 - 2049605
Alignment:
| Q |
9 |
agagttacgtatataaacaagtatgtggactcaaatcgttaatgagttgcaattatggtagaaatcttggagtgctacgaagcattggcatagacatgga |
108 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| |||| ||||| |||||| |||| |||| || || ||||| |||||||| |||||||| ||| |
|
|
| T |
2049756 |
agagttaggtatataaacaaatatgtggactcaaatgtttaaagagttacaattaaggtaaaaattatgaagagctacaaagcattgacatagacacgga |
2049657 |
T |
|
| Q |
109 |
caatggttttaacactgaaacatcgctaccattaataaatttgtgaaggtgaa |
161 |
Q |
| |
|
|| |||| |||| |||||||||| | ||||| || |||||| ||||||||| |
|
|
| T |
2049656 |
aaacggttataacgctgaaacatcaatgccatt-attaatttgagaaggtgaa |
2049605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 2053746 - 2053693
Alignment:
| Q |
3 |
agacaaagagttacgtatataaacaagtatgtggactcaaatcgttaatgagtt |
56 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
2053746 |
agacaaagagttacctataaaaacaaatatgtggactcaaatatttaatgagtt |
2053693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University