View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_high_17 (Length: 289)
Name: NF5587_high_17
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 2492666 - 2492939
Alignment:
| Q |
1 |
ctaaacaaaacttgaacatctctacacttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492666 |
ctaaacaaaacttgaacatctctacacttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctc |
2492765 |
T |
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| Q |
101 |
ctctacataatattgaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492766 |
ctctacataatattgaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaa |
2492865 |
T |
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| Q |
201 |
taaagtttgcaatatgactccattgacagtagtattttcttcattcttacatgtggaacctaatgctctattag |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492866 |
taaagtttgcaatatgactccattgacagtagtattttcttcattcttacatgtggaacctaatgctctattag |
2492939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2489385 - 2489611
Alignment:
| Q |
1 |
ctaaacaaaacttgaacatctctacacttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctc |
100 |
Q |
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|||||| ||||| |||||| ||| ||||||| || ||||||| ||| || |||| |||||| ||||||| |||||||||||||||||||||||||| |
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| T |
2489385 |
ctaaaccaaactgtaacatccctattcttaggacaatcatttgacgctactcttgtagagttaaggacacagatagaacaattgttagcagatatgtctc |
2489484 |
T |
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| Q |
101 |
ctctacataatattgaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||| |||||||||||||| |||||||||||||||| ||| |
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| T |
2489485 |
ctctacataatattgaaccataaaccctgctggagttttctcctacagtggtttggtaaaatccttggtgatcaaccacatttgaagcaagagaatccaa |
2489584 |
T |
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| Q |
201 |
taaagtttgcaatatgactccattgac |
227 |
Q |
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||| || || |||||| || ||||||| |
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| T |
2489585 |
taaggtatggaatatgtcttcattgac |
2489611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 2495810 - 2496003
Alignment:
| Q |
15 |
aacatctctacacttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctcctctacataatatt |
114 |
Q |
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||||||||||| ||||||| || ||||||| | | || |||| |||||| ||||||||| | ||||||| |||||||||||||| ||||||||||||||| |
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| T |
2495810 |
aacatctctactcttaggacaatcatttgaggatactcttgtagagttaaggacacaattaaaacaattattagcagatatgtcccctctacataatatt |
2495909 |
T |
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| Q |
115 |
gaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaagttt |
208 |
Q |
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| |||||||| |||| | |||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||| |
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| T |
2495910 |
gtaccataaagcctgttaggcttttttcctacaatggtttggtaaaatccatggctatcaacgacgtttgaagcaagagaatccaataaggttt |
2496003 |
T |
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