View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_high_2 (Length: 515)
Name: NF5587_high_2
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 59 - 512
Target Start/End: Original strand, 5074909 - 5075357
Alignment:
| Q |
59 |
cttaatagttgaactagattaatagactaacagtagaaggagtacaatcatttaacagatagaaggaaacataataaaatatgaagtcgtttatataatg |
158 |
Q |
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| T |
5074909 |
cttaatagatgaactagattaatagactaacagtagaaggagtacaatcatttaacagatagaaggaaacataataaaatatgaagtcgtttatataatg |
5075008 |
T |
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| Q |
159 |
attaagtacacgtgtggcaggtcctatccccgtgcttctgtttgtattcattgaaattgacgtatttgttggt---ttgcgttgtatgacattagcatat |
255 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| || ||||| |
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| T |
5075009 |
attatgtacacgtgtggcaggtcctatccccgtgcttctgtttgtattcattgaaattgacgtatttgtttgttggttgcgttgtttgaca-taacatat |
5075107 |
T |
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| Q |
256 |
tgatnnnnnnnnnnnnnnnnnntttaaatttattttgagtttgaaagtcttttaaaatgtcttacataaaccatctcttcgtccaaaatctatacatatn |
355 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5075108 |
tgat--------aaaaaaaacatttaaatttattttgagtttgaaagtcttttaaaatgtctt-cataaaccatctcttcgtccaaaatctatacatata |
5075198 |
T |
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| Q |
356 |
nnnnnnnttattcgttgcttatttatttcatccatatattattttgtggtgctgcatgtattgcgttgccattttctaaagggtttgattggttatag-- |
453 |
Q |
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| T |
5075199 |
aaaaaaattattcgttgcttatttatttcatccatatattattttgtggtgctgcatgtattgcgttgccattttctaaagggtttgattggttatagaa |
5075298 |
T |
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| Q |
454 |
aaaaaataataataagagggttgttatatattttaggtcaaataccatgtttggttctt |
512 |
Q |
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| T |
5075299 |
aaaaaataataataagagggttggtatatattttaggtcaaatatcatgtttgattctt |
5075357 |
T |
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