View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5587_high_20 (Length: 272)

Name: NF5587_high_20
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5587_high_20
NF5587_high_20
[»] chr3 (5 HSPs)
chr3 (4-108)||(41980202-41980306)
chr3 (140-194)||(17441804-17441858)
chr3 (140-190)||(17472049-17472099)
chr3 (148-192)||(8820460-8820504)
chr3 (36-80)||(41984177-41984221)
[»] chr2 (5 HSPs)
chr2 (140-194)||(45109479-45109533)
chr2 (140-183)||(45107771-45107814)
chr2 (140-190)||(37349816-37349866)
chr2 (140-184)||(4108913-4108957)
chr2 (148-192)||(13968988-13969032)
[»] chr7 (4 HSPs)
chr7 (140-192)||(23792802-23792854)
chr7 (148-194)||(12611860-12611906)
chr7 (148-192)||(17835141-17835185)
chr7 (148-192)||(25248880-25248924)
[»] chr5 (2 HSPs)
chr5 (140-192)||(22860691-22860743)
chr5 (140-192)||(38472251-38472303)
[»] chr1 (4 HSPs)
chr1 (140-192)||(7351735-7351787)
chr1 (1-92)||(18990836-18990927)
chr1 (140-192)||(13117385-13117437)
chr1 (153-190)||(7644721-7644758)
[»] chr4 (4 HSPs)
chr4 (148-192)||(24826676-24826720)
chr4 (140-192)||(25243482-25243534)
chr4 (140-184)||(31954817-31954861)
chr4 (140-192)||(40137895-40137945)


Alignment Details
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 41980202 - 41980306
Alignment:
Q  4 gtcttctaggatatataacacttttggcaattactgtcatattgctgggacataaataatagcaagagattaaaccaagtctaggaattgaaacaaaata 103  Q
    ||||||||| | ||| | |||||| |||||| | |||||||||||  ||||||  |||||||||| |||||||||||||| |||||||||||||||||||    
T  41980202 gtcttctagaaaatagatcactttgggcaatcaatgtcatattgccaggacatcgataatagcaaaagattaaaccaagtttaggaattgaaacaaaata 41980301  T
Q  104 ctaat 108  Q
     ||||    
T  41980302 ataat 41980306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 17441804 - 17441858
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaacatt 194  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  17441804 tttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaacatt 17441858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 17472049 - 17472099
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaa 190  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| |||||    
T  17472049 tttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaa 17472099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 8820504 - 8820460
Alignment:
Q  148 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||    
T  8820504 agcagctcacctgttgtaattaacttgtgttttcatacgtgaaca 8820460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 41984177 - 41984221
Alignment:
Q  36 actgtcatattgctgggacataaataatagcaagagattaaacca 80  Q
    |||||||||||||  ||||||||||||||| || |||||||||||    
T  41984177 actgtcatattgccaggacataaataatagtaaaagattaaacca 41984221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 45109533 - 45109479
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaacatt 194  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||    
T  45109533 tttcactgagcagctcacctgttgtaattatcttgtgtttacatacgtgaacatt 45109479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 45107814 - 45107771
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacat 183  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  45107814 tttcactgagcagctcacctgttgtaattatcttgtgtttacat 45107771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 37349816 - 37349866
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaa 190  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| |||||    
T  37349816 tttcactgagcagctcacctgttgtaattaacttgtgtttacatacgtgaa 37349866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 4108957 - 4108913
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacata 184  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||    
T  4108957 tttcactgagcagctcacctgttgtaattaacttgtgtttacata 4108913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 13968988 - 13969032
Alignment:
Q  148 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||    
T  13968988 agcagctcacttgttgtaattaacttgtgtttacatacgtgaaca 13969032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 23792802 - 23792854
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    ||||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  23792802 tttcactgagcaactcacatgttgtaattatcttgtgtttacatacgtgaaca 23792854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 12611906 - 12611860
Alignment:
Q  148 agcagctcacatgttgtaattatcttgtgtttacataggtgaacatt 194  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  12611906 agcagctcacctgttgtaattaacttgtgtttacatacgtgaacatt 12611860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 17835141 - 17835185
Alignment:
Q  148 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||    
T  17835141 agcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 17835185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 25248924 - 25248880
Alignment:
Q  148 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||    
T  25248924 agcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 25248880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 22860691 - 22860743
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    |||||||||||||||||| ||||||||||| ||| |||||||||| |||||||    
T  22860691 tttcactaagcagctcacctgttgtaattaacttatgtttacatacgtgaaca 22860743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 38472251 - 38472303
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    ||||||| |||||||||  ||||||||||| |||||||||||||| |||||||    
T  38472251 tttcactgagcagctcatctgttgtaattaacttgtgtttacatacgtgaaca 38472303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 7351787 - 7351735
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    ||||||| || ||||||| |||||||||||||||||||||||||| |||||||    
T  7351787 tttcactgagtagctcacctgttgtaattatcttgtgtttacatacgtgaaca 7351735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 18990836 - 18990927
Alignment:
Q  1 caagtcttctaggatatataacacttttggcaattactgtcatattgctgggacataaataatagcaagagattaaaccaagtctaggaatt 92  Q
    ||||||||||| || ||| || |||||||||||| ||| ||||| ||    |||||||||||||| || |||||||||||||| ||||||||    
T  18990836 caagtcttctacgaaatagaaaacttttggcaatcactatcatactgtcatgacataaataatagtaaaagattaaaccaagtataggaatt 18990927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 13117385 - 13117437
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    ||||||| ||||||||| ||| |||||||| |||||||||||||| |||||||    
T  13117385 tttcactgagcagctcatatggtgtaattaacttgtgtttacatacgtgaaca 13117437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 7644721 - 7644758
Alignment:
Q  153 ctcacatgttgtaattatcttgtgtttacataggtgaa 190  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  7644721 ctcacatgttgtaattaacttgtgtttacatacgtgaa 7644758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 24826676 - 24826720
Alignment:
Q  148 agcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||    
T  24826676 agcagctcacctgttgtaattaacttgtgtttacatacgtgaaca 24826720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 25243482 - 25243534
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    ||||||| |||||||||| |||||||||||  ||||||||||||| |||||||    
T  25243482 tttcactgagcagctcacctgttgtaattaatttgtgtttacatacgtgaaca 25243534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 31954817 - 31954861
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacata 184  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||    
T  31954817 tttcactgagcagctcacctgttgtaattaacttgtgtttacata 31954861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 40137895 - 40137945
Alignment:
Q  140 tttcactaagcagctcacatgttgtaattatcttgtgtttacataggtgaaca 192  Q
    |||||||||||||||||| ||||||||||| ||  |||||||||| |||||||    
T  40137895 tttcactaagcagctcacctgttgtaattaact--tgtttacatacgtgaaca 40137945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University