View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5587_high_22 (Length: 260)

Name: NF5587_high_22
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5587_high_22
NF5587_high_22
[»] chr4 (7 HSPs)
chr4 (28-253)||(20358986-20359208)
chr4 (29-173)||(1994024-1994165)
chr4 (29-173)||(56559035-56559176)
chr4 (68-173)||(9404162-9404264)
chr4 (186-253)||(1993926-1993993)
chr4 (186-248)||(56559207-56559269)
chr4 (186-253)||(9404295-9404360)
[»] scaffold0014 (1 HSPs)
scaffold0014 (29-253)||(8586-8806)
[»] chr3 (4 HSPs)
chr3 (29-173)||(8961532-8961674)
chr3 (29-173)||(3299377-3299518)
chr3 (186-253)||(8961434-8961501)
chr3 (186-253)||(3299279-3299346)
[»] chr8 (2 HSPs)
chr8 (29-173)||(44614408-44614549)
chr8 (186-248)||(44614315-44614377)
[»] chr7 (2 HSPs)
chr7 (29-173)||(22249155-22249296)
chr7 (186-253)||(22249057-22249124)
[»] chr2 (2 HSPs)
chr2 (96-173)||(20266240-20266317)
chr2 (186-253)||(20266142-20266209)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 20359208 - 20358986
Alignment:
Q  28 aaataattgaaacaaaataactatattttcttccctaatgattccttctattaaacaacatttggcatattatacatcaattattagcaaaatcacgtga 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  20359208 aaataattgaaacaaaataactatattttcttccctaatgattccttctattaaaca---tttggcatattatacatcaattattagcaaaatcacgtga 20359112  T
Q  128 aatgaaaatgaatttggattattctttaaaatgtgacttgtaagaaaaaacnnnnnnnaataaaactaatatttgtattataaaagttgtaagttcacat 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  20359111 aatgaaaatgaatttggattattctttaaaatgtgacttgtaagaaaaaactttctttaataaaactaatatttgtattataaaagttgtaagttcacat 20359012  T
Q  228 ataatccatgtgtctaatattattcg 253  Q
    |||| |||||||||||||||| ||||    
T  20359011 ataacccatgtgtctaatattcttcg 20358986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 1994165 - 1994024
Alignment:
Q  29 aataattgaaacaaaataactatattttcttccctaatgattccttctattaaacaacatttggcatattatacatcaattattagcaaaatcacgtgaa 128  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||    
T  1994165 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatc---tggcatattatacatcaattattagcaaaatcacgtgaa 1994069  T
Q  129 atgaaaatgaatttggattattctttaaaatgtgacttgtaagaa 173  Q
    ||| |||||||||||||||||||| |||||  |||| ||||||||    
T  1994068 atggaaatgaatttggattattctctaaaacttgacctgtaagaa 1994024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 56559035 - 56559176
Alignment:
Q  29 aataattgaaacaaaataactatattttcttccctaatgattccttctattaaacaacatttggcatattatacatcaattattagcaaaatcacgtgaa 128  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||    
T  56559035 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatc---tggcatattatacatcaattattagcaaaatcacgtgaa 56559131  T
Q  129 atgaaaatgaatttggattattctttaaaatgtgacttgtaagaa 173  Q
    ||| |||||||||||||||||| | |||||  |||| ||||||||    
T  56559132 atggaaatgaatttggattattatctaaaacatgacatgtaagaa 56559176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 9404162 - 9404264
Alignment:
Q  68 attccttctattaaacaacatttggcatattatacatcaattattagcaaaatcacgtgaaatgaaaatgaatttggattattctttaaaatgtgacttg 167  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  9404162 attccttctattaaaca---tttggcatattatacatcaattattagcaaaatcacgtgaaatggaaatgaatttggattattctttaaaacgtgacttg 9404258  T
Q  168 taagaa 173  Q
    ||||||    
T  9404259 taagaa 9404264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 1993993 - 1993926
Alignment:
Q  186 aataaaactaatatttgtattataaaagttgtaagttcacatataatccatgtgtctaatattattcg 253  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||    
T  1993993 aataaaactaatatttgtattataagagttgtaagtacacatataatccatgtatctaatattcttcg 1993926  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 56559207 - 56559269
Alignment:
Q  186 aataaaactaatatttgtattataaaagttgtaagttcacatataatccatgtgtctaatatt 248  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  56559207 aataaaactaatatttgtattataagagttgtaagtacacatataatccatgtatctaatatt 56559269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 9404295 - 9404360
Alignment:
Q  186 aataaaactaatatttgtattataaaagttgtaagttcacatataatccatgtgtctaatattattcg 253  Q
    ||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||||| ||||    
T  9404295 aataaaactaatatttgtattataagagttgtaagt--acacataatccatgtgtctaatattcttcg 9404360  T

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Target: scaffold0014 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 8586 - 8806
Alignment:
Q  29 aataattgaaacaaaataactatattttcttccctaatgattccttctattaaacaacatttggcatattatacatcaattattagcaaaatcacgtgaa 128  Q
    |||||||||||||||||||||||||||| || |||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||    
T  8586 aataattgaaacaaaataactatattttatttcctaataattccttctattaaaca---tttggcatattatacatcaattattagcaaaatcatgtgaa 8682  T
Q  129 atgaaaatgaatttggattattctttaaaatgtgacttgtaagaaaaaacnnnnnnnaataaaactaatatttgtattataaaagttgtaagttcacata 228  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||       ||||||||| ||||||||||||| | |||||||||| ||| ||    
T  8683 atggaaatgaatttggattattctttaaaacgtgacttgtaagaaaaaac-ttttttaataaaactcatatttgtattatgagagttgtaagtacacgta 8781  T
Q  229 taatccatgtgtctaatattattcg 253  Q
    |||||||||| ||||||||| ||||    
T  8782 taatccatgtatctaatattcttcg 8806  T

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Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 8961674 - 8961532
Alignment:
Q  29 aataattgaaacaaaataactatattttcttccctaatgattccttctattaaacaacatttggcatattatacatcaattattagcaaaatcacgtgaa 128  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  8961674 aataattgaaacaaaataactatattttcttccctaataattccttctattaaa--acatttggcatattatacatcaattattagcaaaatcatgtgaa 8961577  T
Q  129 atgaaaatgaatttggattattctttaaaatgtgacttgtaagaa 173  Q
    ||| |||||||||||||||||||| ||||| ||||||||||||||    
T  8961576 atggaaatgaatttggattattctctaaaacgtgacttgtaagaa 8961532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 3299518 - 3299377
Alignment:
Q  29 aataattgaaacaaaataactatattttcttccctaatgattccttctattaaacaacatttggcatattatacatcaattattagcaaaatcacgtgaa 128  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||   ||||| |||| |||||||||||||||||||||||| |||||    
T  3299518 aataattgaaacaaaataactatattttcttccataataattccttctattaaaca---tttggtatataatacatcaattattagcaaaatcatgtgaa 3299422  T
Q  129 atgaaaatgaatttggattattctttaaaatgtgacttgtaagaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  3299421 atgaaaatgaatttggattattctttaaaacgtgacttgtaagaa 3299377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 8961501 - 8961434
Alignment:
Q  186 aataaaactaatatttgtattataaaagttgtaagttcacatataatccatgtgtctaatattattcg 253  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  8961501 aataaaactaatatttgtattataagagttgtaagtacacatataatccatgtgtctaatattcttcg 8961434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 3299346 - 3299279
Alignment:
Q  186 aataaaactaatatttgtattataaaagttgtaagttcacatataatccatgtgtctaatattattcg 253  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  3299346 aataaaaataatatttgtattataagagttgtaagtacacatataatccatgtgtctaatattcttcg 3299279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 44614549 - 44614408
Alignment:
Q  29 aataattgaaacaaaataactatattttcttccctaatgattccttctattaaacaacatttggcatattatacatcaattattagcaaaatcacgtgaa 128  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||    
T  44614549 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatc---tggcatattatacatcaattattagcaaaatcacgtgaa 44614453  T
Q  129 atgaaaatgaatttggattattctttaaaatgtgacttgtaagaa 173  Q
    ||| |||||||||||||||||| | ||||| ||||||||||||||    
T  44614452 atggaaatgaatttggattattttctaaaacgtgacttgtaagaa 44614408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 44614377 - 44614315
Alignment:
Q  186 aataaaactaatatttgtattataaaagttgtaagttcacatataatccatgtgtctaatatt 248  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  44614377 aataaaactaatatttgtattataagagttgtaagtacacatataatccatgtgtctaatatt 44614315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 22249296 - 22249155
Alignment:
Q  29 aataattgaaacaaaataactatattttcttccctaatgattccttctattaaacaacatttggcatattatacatcaattattagcaaaatcacgtgaa 128  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||   ||||| ||||  |||||||| ||||||||||||||||| ||    
T  22249296 aataattgaaacaaaataactatattttctttcctaataattccttctattaaaca---tttggtatatattacatcaactattagcaaaatcacgtaaa 22249200  T
Q  129 atgaaaatgaatttggattattctttaaaatgtgacttgtaagaa 173  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  22249199 atgaaaatgaatttggattattctttaaaacgtgacttgtaagaa 22249155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 22249124 - 22249057
Alignment:
Q  186 aataaaactaatatttgtattataaaagttgtaagttcacatataatccatgtgtctaatattattcg 253  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||    
T  22249124 aataaaactaatatttgtattataagagttgcaagtacacatataatccatgtgtctaatattcttcg 22249057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 20266317 - 20266240
Alignment:
Q  96 attatacatcaattattagcaaaatcacgtgaaatgaaaatgaatttggattattctttaaaatgtgacttgtaagaa 173  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  20266317 attatacatcaattattagcaaaatcatgtgaaatggaaatgaatttggattattctttaaaacgtgacttgtgagaa 20266240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 20266209 - 20266142
Alignment:
Q  186 aataaaactaatatttgtattataaaagttgtaagttcacatataatccatgtgtctaatattattcg 253  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  20266209 aataaaactaacatttgtattataagagttgtaagtacacatataatccatgtgtctaatattcttcg 20266142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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