View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5587_high_25 (Length: 256)

Name: NF5587_high_25
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5587_high_25
NF5587_high_25
[»] chr4 (7 HSPs)
chr4 (90-256)||(20359456-20359625)
chr4 (171-256)||(1994416-1994502)
chr4 (171-256)||(9403782-9403868)
chr4 (19-89)||(20361085-20361155)
chr4 (171-256)||(56558696-56558782)
chr4 (171-241)||(30454144-30454214)
chr4 (171-241)||(24807884-24807954)
[»] scaffold0014 (1 HSPs)
scaffold0014 (171-256)||(8250-8336)
[»] chr8 (1 HSPs)
chr8 (171-256)||(44614805-44614891)
[»] chr7 (1 HSPs)
chr7 (171-256)||(18789448-18789534)
[»] chr3 (2 HSPs)
chr3 (171-256)||(3299768-3299854)
chr3 (171-230)||(8961942-8962001)
[»] chr2 (1 HSPs)
chr2 (171-241)||(20266571-20266643)
[»] chr6 (1 HSPs)
chr6 (59-109)||(32194401-32194451)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 20359625 - 20359456
Alignment:
Q  90 gcaattccatcgtcgacattgaaacacggaagaaatgaatgaatcacaatcagcaattcacatataccaccacctaaccct--gagtgtgtttggataga 187  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||    
T  20359625 gcaattccatcgtcgacattgaaacacggaaggaatgaatgaatcacaatcagcaattcacatataccaccaccaaaccctaaaagtgtgtttggataga 20359526  T
Q  188 gcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt-aattcctttcatttt 256  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  20359525 gcatttgaaaattcaaggggatttaaaattctaaggaattcaaatgcttcaattgaattcctttcatttt 20359456  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 1994502 - 1994416
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt-aattcctttcatttt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  1994502 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattttaaggaattcaaatgcttcaattgaattcctttcatttt 1994416  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 9403782 - 9403868
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt-aattcctttcatttt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  9403782 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgcttcaattgaattcatttcatttt 9403868  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 20361155 - 20361085
Alignment:
Q  19 ccgcttatcctcctccttcggttcctgttccgggtccgacttcacactttcttcgcagtatttggttgcgc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20361155 ccgcttatcctcctccttcggttcctgttccgggtccgacttcacactttcttcgcagtatttgtttgcgc 20361085  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 56558696 - 56558782
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt-aattcctttcatttt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||| ||||| |||||||||    
T  56558696 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattaaaaggaattcaaatgcttcaattgaattcatttcatttt 56558782  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 30454144 - 30454214
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt 241  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| ||||| |||||||||| |||||||    
T  30454144 gagtgtgtttggatagaggatttgaaaattcaagagaatttgaaatcctaagaaattcaaatgcttcaatt 30454214  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 24807884 - 24807954
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt 241  Q
    |||||||||||||| ||| |||||||||| |||| ||||||||||||||||||| |||||||| |||||||    
T  24807884 gagtgtgtttggatggaggatttgaaaatccaagagaatttgaaattctaaggatttcaaatgcttcaatt 24807954  T

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Target: scaffold0014 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 8250 - 8336
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt-aattcctttcatttt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  8250 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattcgaaggaattcaaatgcttcaattgaattcctttcatttt 8336  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 44614891 - 44614805
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt-aattcctttcatttt 256  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  44614891 gagtgtgtttggatagagcatttgaaaatccaagggaatttgaaattctaaggaattcaaatgcttcaattgaattcctttcatttt 44614805  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 18789534 - 18789448
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt-aattcctttcatttt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  18789534 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaatttaaatgcttcaattgaattcctttcatttt 18789448  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 3299854 - 3299768
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaaatgtttcaatt-aattcctttcatttt 256  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  3299854 gagtgtgtttggatagagcatttaaaaatttaagggaatttgaaattttaaggaattcaaatgcttcaattgaattcctttcatttt 3299768  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 8962001 - 8961942
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattctaaggaattcaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8962001 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattttaaggaattcaa 8961942  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 20266643 - 20266571
Alignment:
Q  171 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattc--taaggaattcaaatgtttcaatt 241  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  20266643 gagtttgtttggatagatgatttgaaaattcaagggaatttgaaattctataaggaattcaaatgcttcaatt 20266571  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 32194451 - 32194401
Alignment:
Q  59 ttcacactttcttcgcagtatttggttgcgcgcaattccatcgtcgacatt 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  32194451 ttcacactttcttcgcagtatttcgttgcgcgcaattccatcgtccacatt 32194401  T

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