View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_high_33 (Length: 240)
Name: NF5587_high_33
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2492668 - 2492447
Alignment:
| Q |
1 |
tagatggtgtttcctacgctattcaaacgagagcttctttggagacatgcaggaattgacatttacatatgactttgatgatattgatgatccttctgtg |
100 |
Q |
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| T |
2492668 |
tagatggtgtttcctacgctattcaaacgagagcttctttggagacatgcaggaattgacatttacatatgactttgatgatattgatgatccttctgtg |
2492569 |
T |
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| Q |
101 |
gtttcacaagggttacctttcatgagtggagtagcagctacagcttcagagaaatcattaatgttccacacagaagtactgaacttcaatcaaagtgaga |
200 |
Q |
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| T |
2492568 |
gtttcacaagggttacctttcatgagtggagtagcagctacagcttcagagaaatcattaatgttccacacagaagtactgaacttcaatcaaagtgaga |
2492469 |
T |
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| Q |
201 |
agaggtatggaatggctcagtg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2492468 |
agaggtatggaatggctcagtg |
2492447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 2489299 - 2489163
Alignment:
| Q |
86 |
gatgatccttctgtggtttcacaagggttacctttcatgagtggagtagcagctacagcttcagagaaatcattaatgttccacacagaagtactgaact |
185 |
Q |
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||||| |||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
2489299 |
gatgacccttctttggtatcacaatggttacctttcatgagtggagtagcagctgcagcttcagagaactcattcatgttccacacagaagaactgaact |
2489200 |
T |
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| Q |
186 |
tcaatcaaagtgagaagaggtatggaatggctcagtg |
222 |
Q |
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| T |
2489199 |
ttaatcaaagtgagaagaggtatggaatggctcagtg |
2489163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2495798 - 2495573
Alignment:
| Q |
1 |
tagatggtgtttcctacgctattcaaacgagagcttctttggagacatgca-ggaattga-----catttacatatgactttgatgatattgatgatcct |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || | ||| |||| |||| |||||||| ||| |
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| T |
2495798 |
tagatggtgtttcctacgctattcaaacgagagcttcttcggagacatgcaaggaacagcaacggcaatcacaaatgaaactgat---attgatgaccct |
2495702 |
T |
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| Q |
95 |
tctgtggtttcacaagggttacctttcatgagtggagtagcagctacagcttcagagaaatcattaatgttccacacagaagtactgaacttcaatcaaa |
194 |
Q |
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||| ||||||||||||||||| | |||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
2495701 |
tctttggtttcacaagggttatccttcatgagcggagtagcagctgcagcttcggagaaatcattcatgttccacacagaagtactgaactttaatcaaa |
2495602 |
T |
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| Q |
195 |
gtgagaagaggtatggaatggctcagtgt |
223 |
Q |
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| T |
2495601 |
gtgagaagaggtatggtatgacccagtgt |
2495573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 2489383 - 2489337
Alignment:
| Q |
5 |
tggtgtttcctacgctattcaaacgagagcttctttggagacatgca |
51 |
Q |
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| T |
2489383 |
tggtgtttcctacgctattcggacgagaatttctttggagacatgca |
2489337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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