View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_high_4 (Length: 470)
Name: NF5587_high_4
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 63 - 454
Target Start/End: Complemental strand, 26616141 - 26615750
Alignment:
| Q |
63 |
acgttgaatgcagtaatgtaattgtttcttagagaagcaacaacttaaaatggtagagttctattgttgtggactagtagtatagtgaagttaatatgag |
162 |
Q |
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| T |
26616141 |
acgttgaatgcagtaatgtaattgtttcttagagaagcaacaacttaaaatggtagagttctattgttgtgggctagtagtatagtgaagttaatatgag |
26616042 |
T |
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| Q |
163 |
aggttttttcggtgagaaaaatttgaagcattaatttcttatcaataactgtgtggggaccttaaattgatcaatgtgaaatgagatcttcaagctagct |
262 |
Q |
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| T |
26616041 |
aggttttttcggtgagaaaaattagaagcattaatttcttatcaataactgtgtggggaccttaaattgatcaatgtgaaatgagatcttcaagctagct |
26615942 |
T |
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| Q |
263 |
agctatagtacaatttcttgttttgtggtatagtatgtaataatattaatgtccctaagattgaattgattatgactcacttcagtcatggcctcctttt |
362 |
Q |
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| T |
26615941 |
agctatagtacaatttcttgttttgtggtatagtatgtaataatattaatgtccctaagattgaattgattatgactcacttcagtcatggcctcctttt |
26615842 |
T |
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| Q |
363 |
tcatgtaactaagacattatgattcatgaatatgtaaacccatcaagcagaaaatggaaggaataaagtgcattaaaaagaatggtcgagat |
454 |
Q |
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| T |
26615841 |
tcatgtaactaagacattatgattcatgaatatgtaaacccatcaagcagaaaatggaaggaataaagtgcattaaaaagaatggtcgagat |
26615750 |
T |
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