View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_high_6 (Length: 426)
Name: NF5587_high_6
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 53039804 - 53039405
Alignment:
| Q |
11 |
cagagatagtatcggcttgaaattatctgcaactaacttgataacttgtctaatacttccaggctgattacgtgttgggcaagaatcctcagcat--gag |
108 |
Q |
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| T |
53039804 |
cagagatagtattggcttgaaattatctgcaactaacttgataacttgtctaatacttccaggctgattacgtgttgggcaagaatcctcagcatatgag |
53039705 |
T |
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| Q |
109 |
ttttctggtgggatatggaaagaatttcccacaattcgtgcatcacaggggagcttcatttcctgctaatgcgaaaactggttgcaaggatgggtggcag |
208 |
Q |
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| T |
53039704 |
ttttctggtgggatatggaaagaatttcccacaattcgtgcatcacaggggagcttcaattcctgctaatgcgaaaactggttgcaaggacgggtggcag |
53039605 |
T |
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| Q |
209 |
tggcttgactcatccgatccgaatcccaacgtagctactggagcacttgttggtggacctttcttaaatgagacttacattgattctaggaacaattcta |
308 |
Q |
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| T |
53039604 |
tggcttgactcatccgatccgaatcccaatgtagctactggagcacttgttggtggacctttcttaaatgagacttacattgattctaggaacaattcta |
53039505 |
T |
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| Q |
309 |
tgcaaggagaaccaagcacatataacagtgctgtcatagttggtctcttatcaagtttagtcaccacatcttcagcccttcaatccttctcctaaactat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53039504 |
tgcaaggagaaccaagcacatataacagtgctgtcatagttggtctcttatcaagtttagtcaccacatcttcggcccttcaatccttctcctaaactat |
53039405 |
T |
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