View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_low_12 (Length: 381)
Name: NF5587_low_12
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 503925 - 503567
Alignment:
| Q |
18 |
ttgtgatcatagtgataatattccaacatttttagttgaatctcaatgtgaatgtatttcaa--ctgggactagtttagaagttaaatgtgatttaagtg |
115 |
Q |
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| T |
503925 |
ttgtgatcatagtgataatattccaacatttttagttgaatctcaatgtgaatgtatttcaaaactgggactagtttagaagttaaatgtgatttaagtg |
503826 |
T |
|
| Q |
116 |
atttagttcgtttctcaatgatagaattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaatgttgccacgata |
215 |
Q |
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| T |
503825 |
atttagttcgtttctcaatgatagaattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttctgaatgttgccacgata |
503726 |
T |
|
| Q |
216 |
gcaatctattaactatgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatctaacacattgctttatgtttg |
315 |
Q |
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| T |
503725 |
gtaatctattaactatgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatctaacacattgcttcatgtttg |
503626 |
T |
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| Q |
316 |
aatgcttatttgcagaatggaaattttcaaaacaattgtagaggtggtcagaattatat |
374 |
Q |
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| T |
503625 |
aatgcttatttgcagaatggaaattttcaaaacaattgtagaggtggtcagaattatat |
503567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 95 - 363
Target Start/End: Complemental strand, 11791687 - 11791419
Alignment:
| Q |
95 |
aagttaaatgtgatttaagtgatttagttcgtttctcaatgatagaattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttg |
194 |
Q |
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| T |
11791687 |
aagttaaatgtggtttgagtgatttagtttgtttctgaatcgtagaattattcaaatagtatagtatttgaaccttattgtaagaaagtcgagatatttg |
11791588 |
T |
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| Q |
195 |
tttccgaatgttgccacgatagcaatctattaactatgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatc |
294 |
Q |
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||| ||||||||||| |||||| |||||| ||| ||| || ||||| | ||| ||||| ||||||| ||||||||||||||||||||||||| |||| |
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| T |
11791587 |
tttttgaatgttgccatgatagctatctatgcactgtgttataaatcacttgtttcaaacgtttaagttgttaggtgaaagacatgattggttttttatc |
11791488 |
T |
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| Q |
295 |
taacacattgctttatgtttgaatgcttatttgcagaatggaaattttcaaaacaattgtagaggtggt |
363 |
Q |
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| T |
11791487 |
taactcattgcttcatgtttgaatgcttatttgcagaatggaaattttcaaaacaattatagaggtggt |
11791419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 363
Target Start/End: Original strand, 15438167 - 15438385
Alignment:
| Q |
144 |
attcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaatgttgccacgatagcaatctattaactatgtcatgaatcaa |
243 |
Q |
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|||| |||||||| ||| |||| | |||| |||||| |||||||| ||||||||| |||||||||| |||| | ||||||| | | ||||||||||||| |
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| T |
15438167 |
attctaatggtttcgtgcttgagccttatcgcaagagagtcgaggcagttgtttctgaatgttgccgtgatatcgatctattcattgtgtcatgaatcaa |
15438266 |
T |
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| Q |
244 |
tcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatctaacacattgctttatgtttgaatgcttatttgcagaatggaaattttc |
343 |
Q |
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| T |
15438267 |
ttgtttcaaatgcttaagttgttaagtcaaagacat-aatggttttatatctaacatactgtttcgtatttgaatgcttatttgcagataggagattttc |
15438365 |
T |
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| Q |
344 |
aaaacaattgtagaggtggt |
363 |
Q |
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| T |
15438366 |
aaaacaattatagaagtggt |
15438385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 141 - 363
Target Start/End: Complemental strand, 11783824 - 11783602
Alignment:
| Q |
141 |
attattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaatgttgccacgatagcaatctattaactatgtcatgaat |
240 |
Q |
| |
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|||||||||||||||| || ||||||| ||||||||| ||||| |||||||| |||| ||||||||| ||||| ||||||| ||| ||||||||| |
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| T |
11783824 |
attattcaaatggtttagtatttgaaccttattgcaacaaagt--aggtagttatttctgaatgttgcgtcgatataaatctatgcactttgtcatgaac |
11783727 |
T |
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| Q |
241 |
caatcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatctaacac--attgctttatgtttgaatgcttatttgcagaatggaaa |
338 |
Q |
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| T |
11783726 |
caattgtttcgaatgcataagttgttagttaaaagttatgattggtattatatttaacactgactgcttcatgtttcaatgtgtatttgcagaatagaaa |
11783627 |
T |
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| Q |
339 |
ttttcaaaacaattgtagaggtggt |
363 |
Q |
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|||||||||| ||| |||||||||| |
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| T |
11783626 |
ttttcaaaactattatagaggtggt |
11783602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 9095567 - 9095630
Alignment:
| Q |
140 |
aattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaat |
203 |
Q |
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|||||||| |||||||| | |||||||| ||||||||||| ||| |||||||||| ||| |||| |
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| T |
9095567 |
aattattctaatggtttagagtttgaaccttattgcaagagagtagaggtagttgcttctgaat |
9095630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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