View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5587_low_16 (Length: 292)

Name: NF5587_low_16
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5587_low_16
NF5587_low_16
[»] chr1 (10 HSPs)
chr1 (6-257)||(28381434-28381685)
chr1 (47-257)||(5597923-5598132)
chr1 (26-257)||(30713317-30713549)
chr1 (33-250)||(25388267-25388485)
chr1 (113-202)||(3873861-3873949)
chr1 (152-257)||(38225648-38225753)
chr1 (33-251)||(27800724-27800940)
chr1 (29-141)||(39584605-39584717)
chr1 (33-140)||(9990644-9990751)
chr1 (223-257)||(40703928-40703962)
[»] chr5 (5 HSPs)
chr5 (6-257)||(35836680-35836931)
chr5 (21-257)||(36255250-36255486)
chr5 (79-206)||(33018916-33019044)
chr5 (105-177)||(28449277-28449350)
chr5 (33-141)||(32239365-32239473)
[»] chr4 (10 HSPs)
chr4 (6-257)||(17874366-17874618)
chr4 (6-257)||(22877883-22878133)
chr4 (26-257)||(54684080-54684312)
chr4 (6-203)||(23131227-23131423)
chr4 (6-159)||(19163594-19163747)
chr4 (105-257)||(50016068-50016221)
chr4 (6-106)||(40687689-40687789)
chr4 (33-177)||(43128025-43128170)
chr4 (21-141)||(47129245-47129365)
chr4 (204-257)||(23131494-23131547)
[»] chr2 (9 HSPs)
chr2 (21-257)||(13415154-13415390)
chr2 (6-257)||(6728195-6728446)
chr2 (6-254)||(27951836-27952083)
chr2 (26-209)||(36930703-36930887)
chr2 (26-257)||(2208260-2208489)
chr2 (122-257)||(1467477-1467613)
chr2 (184-257)||(18828128-18828201)
chr2 (29-141)||(13059511-13059623)
chr2 (38-149)||(37532727-37532838)
[»] chr8 (10 HSPs)
chr8 (81-257)||(39297966-39298142)
chr8 (26-257)||(4311272-4311503)
chr8 (6-257)||(8565075-8565326)
chr8 (29-257)||(38732546-38732774)
chr8 (33-257)||(42648698-42648923)
chr8 (29-141)||(25890649-25890761)
chr8 (33-140)||(9445323-9445430)
chr8 (29-141)||(136505-136617)
chr8 (29-141)||(18309359-18309471)
chr8 (33-141)||(37322148-37322256)
[»] chr3 (5 HSPs)
chr3 (6-257)||(6985375-6985624)
chr3 (6-257)||(8129425-8129673)
chr3 (6-256)||(19982083-19982333)
chr3 (123-251)||(8440950-8441079)
chr3 (30-139)||(26535631-26535740)
[»] scaffold0036 (1 HSPs)
scaffold0036 (6-197)||(45226-45416)
[»] chr6 (8 HSPs)
chr6 (26-257)||(28633691-28633924)
chr6 (46-256)||(33820904-33821115)
chr6 (26-257)||(15601794-15602026)
chr6 (33-257)||(3550558-3550779)
chr6 (180-257)||(8809887-8809963)
chr6 (33-141)||(13649455-13649563)
chr6 (32-141)||(20013763-20013870)
chr6 (33-141)||(18587941-18588049)
[»] scaffold0351 (1 HSPs)
scaffold0351 (6-257)||(13410-13661)
[»] chr7 (8 HSPs)
chr7 (26-251)||(45165997-45166221)
chr7 (42-257)||(2317377-2317593)
chr7 (26-257)||(39693943-39694173)
chr7 (149-257)||(42964690-42964797)
chr7 (26-257)||(6344078-6344310)
chr7 (92-243)||(32937480-32937632)
chr7 (56-141)||(17507360-17507445)
chr7 (56-141)||(17545769-17545854)
[»] scaffold0750 (1 HSPs)
scaffold0750 (128-257)||(5688-5815)
[»] scaffold0024 (1 HSPs)
scaffold0024 (38-140)||(87651-87753)
[»] scaffold0161 (1 HSPs)
scaffold0161 (32-72)||(6453-6493)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 28381685 - 28381434
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28381685 aaaaagaaagttccatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 28381586  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28381585 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 28381486  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  28381485 tgtgctgagagggctgctttagcaatgttaatataatccatttttatttgtt 28381434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 47 - 257
Target Start/End: Original strand, 5597923 - 5598132
Alignment:
Q  47 tatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtttaggcattggttaac 146  Q
    |||||||| ||||||||| |||||||||| | |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||     
T  5597923 tatcattctttgtggtggctgaaagccaataaggttgtttttatgtttggtgatcagatgtggttgtcgaacccattgttgtgtttaggtattggttaaa 5598022  T
Q  147 cacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagtgttaatataatctat 246  Q
     ||||||||||||||| | |||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || ||    
T  5598023 aacttgttgtaatttt-taaactgcttgtatcgttttaagtagtcttttcggtacatcttgtgctgagggggctgctttagcagtgttaatatattccat 5598121  T
Q  247 ttttgtttgtt 257  Q
    |||||||||||    
T  5598122 ttttgtttgtt 5598132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 30713317 - 30713549
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||| | | |||||| |||||||||||||||||  |||||| ||||| ||   |||    
T  30713317 caattattagataaagtaaaatattattcattatggtggttgaaagcccataaggttgtttttatgtttggtgatcaattgtggtggtcgagtctcatgt 30713416  T
Q  126 cgtgtttaggcattggttaaccacttgttgtaatt-ttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctt 224  Q
    |||||||||||||||| ||||||||| |||||||| ||| ||||||||||| || ||| || |||  |||||||||||||||||| || || |  ||||     
T  30713417 cgtgtttaggcattggataaccacttcttgtaattcttgagaactgcttgtatcttttctaatagctttttcggtacatcttgtgctgtgaagattgcta 30713516  T
Q  225 tagcagtgttaatataatctatttttgtttgtt 257  Q
    | | ||||||||||||||| |||||||||||||    
T  30713517 tggtagtgttaatataatccatttttgtttgtt 30713549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 25388485 - 25388267
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgttt 132  Q
    ||||||||||||||||| |||| || |||||| ||||||  |||| |||||| ||| | ||||||||  |  |||||| ||||| ||| |||||||||||    
T  25388485 tagataaagtaaaatattattctttatggtggttgaaagttaaaaaggttgtctttgtatttggtgaatatttgtggtggtcgagtcctttgtcgtgttt 25388386  T
Q  133 aggcattggttaaccacttgttgtaat-tttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagt 231  Q
    || |||||| || |||||||||||| | | |||||| |||||||||  ||||| | ||||||||||||||| |||||| ||||  | ||| | ||||| |    
T  25388385 agacattggctagccacttgttgtattctgtgtgaattgcttgtttttttttttgcagtcttttcggtacaccttgtgctgaggagactgttatagcaat 25388286  T
Q  232 gttaatataatctattttt 250  Q
    |||||||||||| ||||||    
T  25388285 gttaatataatccattttt 25388267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 3873949 - 3873861
Alignment:
Q  113 tcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattt-tgtgaactgcttgtttcgtttttagtagtcttttcggtaca 202  Q
    |||| |||||||||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||| ||||    
T  3873949 tcgagtccattgtcgtgtttaggcattgactaaccacttgttgtattttatgtgaactgcttgttt--tttttagtagtcttttcgataca 3873861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 38225753 - 38225648
Alignment:
Q  152 gttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagtgttaatataatctatttttg 251  Q
    |||||||| |||| |||||  |||||||| || |||||| ||||||||||| |||||| ||| ||||||  ||||||||||||||||||||| |||||||    
T  38225753 gttgtaatcttgtaaactgtgtgtttcgtgttaagtagttttttcggtacaccttgtgctgaaagggctattttagcagtgttaatataatccatttttg 38225654  T
Q  252 tttgtt 257  Q
     |||||    
T  38225653 cttgtt 38225648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 27800940 - 27800724
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgttt 132  Q
    |||| ||| |||| ||| |||| ||||||||| |||||||||| |    ||||||| | |||||||| ||  |||||| ||||| ||| ||||| | |||    
T  27800940 tagacaaaataaagtattattctttgtggtggttgaaagccaataaacgtgtatttctttttggtgagcatttgtggtggtcgagtcctttgtcctattt 27800841  T
Q  133 aggcattggttaaccacttgttgtaattt-tgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagt 231  Q
    ||||||||  || |||||||||||| |   |||||| |||||||||   ||| || ||||||||||||||| ||| || ||||| |  || | |||||||    
T  27800840 aggcattgactagccacttgttgtattccgtgtgaattgcttgttt---tttcagcagtcttttcggtacaccttatgctgagaagattgttatagcagt 27800744  T
Q  232 gttaatataatctatttttg 251  Q
    ||| |||||||| |||||||    
T  27800743 gtttatataatccatttttg 27800724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 39584717 - 39584605
Alignment:
Q  29 ttattagataaagtaaaatatcattcattgtggtggatgaaagcc-aaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcg 127  Q
    |||||||||||||| || | | |||| ||||||||| |||||||| |||||| |||| ||||| |||||||||||  |||||| ||| | |||  |||||    
T  39584717 ttattagataaagttaagttttattctttgtggtggttgaaagccaaaaaggcttgt-tttatttttggtgatcatttgtggtggtctagtcctatgtcg 39584619  T
Q  128 tgtttaggcattgg 141  Q
    ||||||||||||||    
T  39584618 tgtttaggcattgg 39584605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 9990751 - 9990644
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgttt 132  Q
    |||| |||||||||||| ||||  |||||||| ||||||| || | || | | ||| | |||||||| ||  ||||||  |||| |||||||||||||||    
T  9990751 tagacaaagtaaaatattattctctgtggtggttgaaagcaaataaggctatctttgtttttggtgaacaattgtggtgatcgagtccattgtcgtgttt 9990652  T
Q  133 aggcattg 140  Q
    ||||||||    
T  9990651 aggcattg 9990644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 40703962 - 40703928
Alignment:
Q  223 tttagcagtgttaatataatctatttttgtttgtt 257  Q
    ||||||||||||||||||||| |||||||||||||    
T  40703962 tttagcagtgttaatataatccatttttgtttgtt 40703928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 35836931 - 35836680
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35836931 aaaaggaaagttccatagtacaattattagataaagtaaaatatcattcaatgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 35836832  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  35836831 gtggttgtcgaatccattgtcgtgcttaggcattggttaaccacttgttgtaattttgtgaaatgcttgttccgtttttagtagtcttttcggtacatct 35836732  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||| ||||||| ||||| ||||||||||||||||||  |||||||||||||    
T  35836731 tgtgctgagaggactgctatagcagtgttaatataattcatttttgtttgtt 35836680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 36255486 - 36255250
Alignment:
Q  21 tagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatcc 120  Q
    |||| ||| |||||||||||||||| ||||| |||||||||||| ||||||| || | |||||| ||| |||||| |||| ||||| || ||||||||||    
T  36255486 tagtgcaactattagataaagtaaagtatcaatcattgtggtggttgaaagctaataaggttgtttttgtgtttgatgattagatgggggtgtcgaatcc 36255387  T
Q  121 attgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggct 220  Q
    |||||| |||||||||||||||||||   ||||||||||||||| ||||| ||| |||||||| |||||||||||||||||| |||||| ||| ||||||    
T  36255386 attgtcctgtttaggcattggttaactttttgttgtaattttgtaaactgtttggttcgttttaagtagtcttttcggtacaccttgtgctgaaagggct 36255287  T
Q  221 gctttagcagtgttaatataatctatttttgtttgtt 257  Q
       |  ||||||||||||||||| ||||||| |||||    
T  36255286 atatgtgcagtgttaatataatccatttttgcttgtt 36255250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 33018916 - 33019044
Alignment:
Q  79 ggttgtatttatgtttggtgatcagatgtggttgtcgaa-tccattgtcgtgtttaggcattggttaaccacttgttgtaatt-ttgtgaactgcttgtt 176  Q
    |||||| |||| ||||||||||||  |||||| |||||  ||||| |||||||||||||||||||||||||||| |||||||| ||  || |  ||| ||    
T  33018916 ggttgtttttacgtttggtgatcatttgtggtggtcgagctccat-gtcgtgtttaggcattggttaaccacttcttgtaattatttagaccaacttatt 33019014  T
Q  177 tcgtttttagtagtcttttcggtacatctt 206  Q
    || ||| |||||||||||||||||||||||    
T  33019015 tcttttatagtagtcttttcggtacatctt 33019044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 28449277 - 28449350
Alignment:
Q  105 tgtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgta-attttgtgaactgcttgttt 177  Q
    |||||| |||||  ||||||||||||||||||||||  ||||||||| |||||  || ||||||||||||||||    
T  28449277 tgtggtggtcgagcccattgtcgtgtttaggcattgactaaccactttttgtaccttgtgtgaactgcttgttt 28449350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 32239473 - 32239365
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaaggg-ttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtt 131  Q
    |||| |||||||| ||| |||  ||||||||| |||||||||||| || |||| ||| | ||||||||||| ||||||| ||| | |||  |||||||||    
T  32239473 tagacaaagtaaagtattattttttgtggtggttgaaagccaaaaaggcttgt-tttgtatttggtgatcatatgtggtggtctagtcctatgtcgtgtt 32239375  T
Q  132 taggcattgg 141  Q
    ||||| ||||    
T  32239374 taggcgttgg 32239365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 17874618 - 17874366
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    ||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  17874618 aaaaagaaagttctttagtacaattattagataaagtaaagtatcattcattgtggtggctgaaagccaatagggttgtacttatgtttggtgattagat 17874519  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttag-tagtcttttcggtacatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| || ||||||||||||||||||    
T  17874518 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattatgtaaactgtttgtttcgttttaagttagtcttttcggtacatc 17874419  T
Q  205 ttgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
     |||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  17874418 atgtgctgagagggctgctttagcagtgttaatataatcaatttttgtttgtt 17874366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 22877883 - 22878133
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    |||||||||||| | |||| ||||||||||| |||||||  |||||||| ||||||||| |||||||||| | ||||||||| |||||||||||||||||    
T  22877883 aaaaagaaagttccttagttcaattattagacaaagtaaggtatcattctttgtggtggctgaaagccaataaggttgtattcatgtttggtgatcagat 22877982  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
     ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| | |||||||||| ||||||| || ||||||||||||||||||    
T  22877983 atggttgtcgaacccattgtcgtgtttaggcataggttaacaacttgttgtaatttt-taaactgcttgtatcgttttaagcagtcttttcggtacatct 22878081  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||| |||| ||||||||||| ||||||||||||| || |||||||||||||    
T  22878082 tgtgttgagggggctgctttaacagtgttaatatattccatttttgtttgtt 22878133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 26 - 257
Target Start/End: Complemental strand, 54684312 - 54684080
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| | | |||||| |||||||||||||||||  | |||| ||||| |||  |||    
T  54684312 caattattagataaagtaaaatattattcattatggtggatgaaagcccataaggttgtttttatgtttggtgatcaattatggtggtcgagtcccatgt 54684213  T
Q  126 cgtgtttaggcattggttaaccacttgttgtaatt-ttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctt 224  Q
    ||| |||||||||||||||||||| | |||||||| ||| | ||||||||| || ||| |||||||||||||||||||||||||| || || |  ||||     
T  54684212 cgtatttaggcattggttaaccacgtcttgtaattcttgaggactgcttgtatcttttctagtagtcttttcggtacatcttgtgctgtgaagattgcta 54684113  T
Q  225 tagcagtgttaatataatctatttttgtttgtt 257  Q
    | ||||||||||||||||| ||||||| |||||    
T  54684112 tggcagtgttaatataatccatttttgcttgtt 54684080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 23131227 - 23131423
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    |||||||||||| | |||| ||||||||||| |||||||  |||||||| ||||||||| |||||||||| |  |||||||| ||||||||| |||||||    
T  23131227 aaaaagaaagttccttagttcaattattagacaaagtaaggtatcattctttgtggtggctgaaagccaataatgttgtattcatgtttggtaatcagat 23131326  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacat 203  Q
    |||||||||||| ||||||||||||||||||||  |||||  ||||||||||||||| | | |||||||| ||||||| |||||||||||||||||||    
T  23131327 gtggttgtcgaacccattgtcgtgtttaggcataagttaataacttgttgtaatttt-taatctgcttgtatcgttttaagtagtcttttcggtacat 23131423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 19163594 - 19163747
Alignment:
Q  6 aaaaagaaagtttcat-agtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcaga 104  Q
    |||||||||||| ||| ||| |||||||||||||||||||| ||||| || ||||||||| ||||||| |  | |||||| ||| |||||||||||||||    
T  19163594 aaaaagaaagtt-catcagtgcaattattagataaagtaaagtatcagtctttgtggtggctgaaagctagtaaggttgtttttgtgtttggtgatcaga 19163692  T
Q  105 tgtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaat 159  Q
    ||||| |||||||||||||||| |||||||||||||||||||   ||||||||||    
T  19163693 tgtgggtgtcgaatccattgtcttgtttaggcattggttaacattttgttgtaat 19163747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 257
Target Start/End: Original strand, 50016068 - 50016221
Alignment:
Q  105 tgtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaatt-ttgtgaactgcttgtttcgtttttagtagtcttttcggtacat 203  Q
    |||||| ||||| |||  ||||||||||||||||||||||||||||| |||||||| ||| |||| |||||| || ||| ||||||||||||||||||||    
T  50016068 tgtggtggtcgagtcccatgtcgtgtttaggcattggttaaccacttcttgtaattattgagaacagcttgtatcttttatagtagtcttttcggtacat 50016167  T
Q  204 cttgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||||| || || |  |||| | ||||||||||||||||| ||||||| |||||    
T  50016168 cttgtgctgtgaagattgctatggcagtgttaatataatccatttttgcttgtt 50016221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 40687789 - 40687689
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    ||||||||||||   |||| |||||||||||||||||||| |||||||| ||||||||| ||||||| || | |||||| ||| |||||| |||||||||    
T  40687789 aaaaagaaagttcattagttcaattattagataaagtaaagtatcattctttgtggtggctgaaagctaataaggttgtttttgtgtttgatgatcagat 40687690  T
Q  106 g 106  Q
    |    
T  40687689 g 40687689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 43128025 - 43128170
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgttt 132  Q
    |||| |||||||||||| |||| ||||||||| |||||||||||| || ||| ||| | |||||||| ||  || ||| ||||| || |||||||| |||    
T  43128025 tagacaaagtaaaatattattctttgtggtggttgaaagccaaaaaggatgtctttgtatttggtgaacatctgcggtggtcgagtctattgtcgtattt 43128124  T
Q  133 aggcattggttaaccacttgttgtaatt-ttgtgaactgcttgttt 177  Q
    ||||||||| || |||||| ||||| ||  | ||||||||||||||    
T  43128125 aggcattggctagccacttattgtatttcgtatgaactgcttgttt 43128170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 47129365 - 47129245
Alignment:
Q  21 tagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatcc 120  Q
    |||||||| | ||||| |||||||||||||| || ||||||||| |||||||||||| || | | ||| | |||||||| || ||||||| ||| | |||    
T  47129365 tagtacaacttttagacaaagtaaaatatcactctttgtggtggttgaaagccaaaaaggctatttttgtttttggtgaacacatgtggtggtctagtcc 47129266  T
Q  121 attgtcgtgtttaggcattgg 141  Q
      ||||||||||| |||||||    
T  47129265 tatgtcgtgtttaagcattgg 47129245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 23131494 - 23131547
Alignment:
Q  204 cttgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||||| |||| |||||| |||||||||||||||||| |  |||||||||||||    
T  23131494 cttgtgctgagggggctgttttagcagtgttaatatagttcatttttgtttgtt 23131547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 13415390 - 13415154
Alignment:
Q  21 tagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatcc 120  Q
    |||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13415390 tagttcaattattagacaaagtaaagtatcattctttgtggtggctgaaagccaatagggttgtatttatgtttggtgatcagatgtggttgtcgaatcc 13415291  T
Q  121 attgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggct 220  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  13415290 attgtcgtgtttaggcattggttaacaacttgttgtaattttttaaactgcttgtatcgttttaagtagtcttttcggtacatcttgtgctgagagggct 13415191  T
Q  221 gctttagcagtgttaatataatctatttttgtttgtt 257  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  13415190 gctttagtagtgttaatataatccatttttgtttgtt 13415154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 6728195 - 6728446
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    ||||||||||||   |||| |||||||||||||||||||| |||||||| ||||||||| ||||||| || |||||||| ||| ||||||||||||||||    
T  6728195 aaaaagaaagttctttagttcaattattagataaagtaaagtatcattctttgtggtggctgaaagctaatagggttgtttttgtgtttggtgatcagat 6728294  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
    ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  6728295 gtggttgtcgaatccattgtcgtgtttaggcattggttaacaatttattgtaattttgtaaactgcttgtttcgttttaagtagtcttttcggtacatct 6728394  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    | || ||| ||||||||||||||||||||||||||||| |||||||||||||    
T  6728395 tatgctgaaagggctgctttagcagtgttaatataatccatttttgtttgtt 6728446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 27951836 - 27952083
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    |||||||||||| | |||| ||||||||||| |||||||||||| |||| ||||||||| |||||||||   ||||||||||||||||||||||||||||    
T  27951836 aaaaagaaagttccttagttcaattattagacaaagtaaaatattattcgttgtggtggctgaaagccattggggttgtatttatgtttggtgatcagat 27951935  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| | |||||||||| ||||||| |||||||||||||||||||||    
T  27951936 gtggttgtcgaatccattgtcgtgtttaggcattggttgacaacttgttgt-attttttaaactgcttgtatcgttttaagtagtcttttcggtacatct 27952034  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgttt 254  Q
    | ||  ||| || |||||||||||||| |||||||||| ||||||||||    
T  27952035 tatgccgaggggactgctttagcagtggtaatataatccatttttgttt 27952083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 36930887 - 36930703
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||  | | |||||| |||| ||||||||||||  |||||| |||||  ||  |||    
T  36930887 caattattagataaagtaaaatactattcattgtggtggttgaaagcacataaggttgtttttacgtttggtgatcatttgtggtggtcgagccctatgt 36930788  T
Q  126 cgtgtttaggcattggttaaccacttgttgtaatt-ttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtg 209  Q
    |||||||||||||||||||||||||| ||||||||  |  || |  ||||| || ||| ||||||||||||||||||||||||||    
T  36930787 cgtgtttaggcattggttaaccacttcttgtaattacttagaccaacttgtatcttttatagtagtcttttcggtacatcttgtg 36930703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 2208260 - 2208489
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||| ||||| || ||||| ||| ||||||| |  | | | || ||| |||||||||||||||||||| |||||||||||||||    
T  2208260 caattattagataaagtaaagtatcagtctttgtgatggctgaaagctagtaagatagtttttgtgtttggtgatcagatgtggatgtcgaatccattgt 2208359  T
Q  126 cgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgcttt 225  Q
    | |||||||||||||| ||||   | ||||| ||||||| |||||  ||||||||  | |||||| ||||||||||| ||| || ||| ||||||  ||     
T  2208360 cttgtttaggcattggctaacttttggttgt-attttgtaaactgtgtgtttcgtgctaagtagt-ttttcggtacaccttatgctgaaagggctattta 2208457  T
Q  226 agcagtgttaatataatctatttttgtttgtt 257  Q
    ||||||||||||||| || ||||||| |||||    
T  2208458 agcagtgttaatatattccatttttgcttgtt 2208489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 1467613 - 1467477
Alignment:
Q  122 ttgtcgtgtttaggcattggttaaccacttgttgtaattttg--tgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggc 219  Q
    |||||||||||| ||||||| | ||| ||||||||| |||||  ||||||||| ||| | ||| |||||||||||| |||||| |||||| ||||||| |    
T  1467613 ttgtcgtgtttatgcattggctgacctcttgttgtatttttgactgaactgctcgtt-cttttctagtagtctttttggtacaccttgtgttgagaggac 1467515  T
Q  220 tgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    || | ||||||||||||| ||||| |||||||||||||    
T  1467514 tgttatagcagtgttaatctaatccatttttgtttgtt 1467477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 18828201 - 18828128
Alignment:
Q  184 tagtagtcttttcggtacatcttgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||| |||||||| |||||||||||| ||||||| |||||   ||||||||||||||||| |||||||||||||    
T  18828201 tagttgtcttttcagtacatcttgtgttgagaggactgctagtgcagtgttaatataatccatttttgtttgtt 18828128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 13059623 - 13059511
Alignment:
Q  29 ttattagataaagtaaaatatcattcattgtggtggatgaaagcc-aaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcg 127  Q
    ||||||||||||||||| | | |||| ||||||||| |||||||| |||||| |||| ||| | |||||||| || ||||||| ||| | |||  |||||    
T  13059623 ttattagataaagtaaagttttattccttgtggtggttgaaagccaaaaaggcttgt-tttgtttttggtgaccatatgtggtggtctagtcctatgtcg 13059525  T
Q  128 tgtttaggcattgg 141  Q
    ||||||||||||||    
T  13059524 tgtttaggcattgg 13059511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 37532727 - 37532838
Alignment:
Q  38 aaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtttaggca 137  Q
    |||||||||||| |||| ||||||||| ||||| |||||| |  | | ||| | |||||||| ||  |||||| ||||| | ||||||||||| ||||||    
T  37532727 aaagtaaaatattattctttgtggtggttgaaaaccaaaaagactatctttgtatttggtgaacatttgtggtggtcgagttcattgtcgtgtctaggca 37532826  T
Q  138 ttggttaaccac 149  Q
    |||  |||||||    
T  37532827 ttgactaaccac 37532838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 81 - 257
Target Start/End: Original strand, 39297966 - 39298142
Alignment:
Q  81 ttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgt 180  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39297966 ttgtatttatgtttggtgatcagatgtggttgtcgaattcattgtcgtgtttaggcattggttaaccacttgttgtaattttgtaaactgcttgtttcgt 39298065  T
Q  181 ttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||    
T  39298066 tttaagtagtcttttcggtacatcttgtgctgagagggctgctttagcagtgttaatataattcatttttgtttgtt 39298142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 4311272 - 4311503
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||| |||||  | ||||||||| ||||||| || | |||||| ||| |||||||||||||||||||| |||||||||||||||    
T  4311272 caattattagataaagtaaagtatcagactttgtggtggctgaaagctaataaggttgtttttgtgtttggtgatcagatgtgggtgtcgaatccattgt 4311371  T
Q  126 cgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgcttt 225  Q
    | |||||| ||||||||||||   |||||||||| |||| |||||||||||||||||| ||||||||||||| |||| |||||| ||| ||||||  |||    
T  4311372 cctgtttaagcattggttaacattttgttgtaatcttgtaaactgcttgtttcgttttaagtagtcttttcgatacaccttgtgctgaaagggctatttt 4311471  T
Q  226 agcagtgttaatataatctatttttgtttgtt 257  Q
    |||||||||||||||||| ||||||| |||||    
T  4311472 agcagtgttaatataatccatttttgattgtt 4311503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 8565075 - 8565326
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    ||||||||||||   |||| |||||||||||||||||||| ||||| || ||||||||| ||||||| |  | |||||| ||| | ||||||||||||||    
T  8565075 aaaaagaaagttcactagtgcaattattagataaagtaaagtatcagtctttgtggtggctgaaagctagtaaggttgtttttgtttttggtgatcagat 8565174  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
    |||| |||||||||||||||| |||||||||||||||||||   ||||||||||  ||| ||||||| || |||||||||||||| ||||||||||||||    
T  8565175 gtgggtgtcgaatccattgtcttgtttaggcattggttaacattttgttgtaatcgtgtaaactgctggtctcgtttttagtagttttttcggtacatct 8565274  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||| ||| ||||||  ||| | ||||||||||||||| ||||||| |||||    
T  8565275 tgtgctgaaagggctatttttgaagtgttaatataatccatttttgcttgtt 8565326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 257
Target Start/End: Original strand, 38732546 - 38732774
Alignment:
Q  29 ttattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgt 128  Q
    |||||||||||| |||||||| |||||||||| ||| |||| || |||| |||||| |||||||||||||||    | | || || |||| |  ||||||    
T  38732546 ttattagataaaataaaatattattcattgtgatggctgaa-gctaaaaaggttgtttttatgtttggtgattgttttttgtggttgaattctatgtcgt 38732644  T
Q  129 gtttaggcattggttaaccacttgttgtaatt-ttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttag 227  Q
     |||| ||||||| ||||||| |||||||||| ||||||||||||| |||| ||||||| |||||| ||||| || |||||| ||||||  ||| | ||     
T  38732645 atttatgcattggataaccacctgttgtaattcttgtgaactgcttctttcatttttaggagtcttctcggtgcaccttgtgctgagagaactgatatat 38732744  T
Q  228 cagtgttaatataatctatttttgtttgtt 257  Q
    |||||||||||||||| |||||||||||||    
T  38732745 cagtgttaatataatccatttttgtttgtt 38732774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 257
Target Start/End: Complemental strand, 42648923 - 42648698
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgttt 132  Q
    |||| |||||||||||| |||| ||||||||| |||| ||||| | |  ||| ||| | |||||||| ||  |||||| || ||  |  |||||||||||    
T  42648923 tagacaaagtaaaatattattctttgtggtggctgaaggccaataagactgtttttgtttttggtgaccatttgtggtggttgagccatttgtcgtgttt 42648824  T
Q  133 aggcattggttaaccacttgttgtaattttg--tgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcag 230  Q
    ||||||||  | ||| |||||| || ||||   |||| |||||||| | ||||||||||||||||||||||| ||| || |||||||  |||| || ||     
T  42648823 aggcattgactgacctcttgttatatttttaactgaaatgcttgtt-cttttttagtagtcttttcggtacaccttatgctgagaggattgctataacaa 42648725  T
Q  231 tgttaatataatctatttttgtttgtt 257  Q
    |||||| |||||| |||||||||||||    
T  42648724 tgttaaaataatccatttttgtttgtt 42648698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 25890761 - 25890649
Alignment:
Q  29 ttattagataaagtaaaatatcattcattgtggtggatgaaagcc-aaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcg 127  Q
    ||||||||||||||||| | | |||| ||||||||| |||||||| |||||| |||| ||| | ||||||||||| ||||||| ||| | |||  |||||    
T  25890761 ttattagataaagtaaagttttattctttgtggtggttgaaagccaaaaaggcttgt-tttgtttttggtgatcatatgtggtggtccagtcctatgtcg 25890663  T
Q  128 tgtttaggcattgg 141  Q
    ||||||||||||||    
T  25890662 tgtttaggcattgg 25890649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 9445323 - 9445430
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgttt 132  Q
    |||| |||||||||||| |||  ||||||||| |||||||||| | | |||| ||| | ||| |||| ||  |||||| ||||| |||||||||||||||    
T  9445323 tagacaaagtaaaatattattttttgtggtggttgaaagccaataagattgtctttgttttttgtgaacaattgtggtggtcgagtccattgtcgtgttt 9445422  T
Q  133 aggcattg 140  Q
    ||||||||    
T  9445423 aggcattg 9445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 136617 - 136505
Alignment:
Q  29 ttattagataaagtaaaatatcattcattgtggtggatgaaagcc-aaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcg 127  Q
    ||||||||||||||||| | | |||| ||||||||| |||||||| |||||| |||| ||| | |||||||| || ||||||| ||| | |||  |||||    
T  136617 ttattagataaagtaaagttttattccttgtggtggttgaaagccaaaaaggcttgt-tttgtttttggtgaccatatgtggtggtctagtcctatgtcg 136519  T
Q  128 tgtttaggcattgg 141  Q
    ||||||||||||||    
T  136518 tgtttaggcattgg 136505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 18309359 - 18309471
Alignment:
Q  29 ttattagataaagtaaaatatcattcattgtggtggatgaaagcc-aaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcg 127  Q
    ||||||||||||||||| | | |||| ||||||||| |||||||| |||||| |||| ||| | |||||||| || ||||||| ||| | |||  |||||    
T  18309359 ttattagataaagtaaagttttattccttgtggtggttgaaagccaaaaaggcttgt-tttgtttttggtgaccatatgtggtggtctagtcctatgtcg 18309457  T
Q  128 tgtttaggcattgg 141  Q
    ||||||||||||||    
T  18309458 tgtttaggcattgg 18309471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 37322256 - 37322148
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaag-ccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtt 131  Q
    |||| |||||||||||| |||| ||||||||| |||||| | |||||| |||| ||| | ||||||||||| ||||||| ||| | |||  |||||||||    
T  37322256 tagacaaagtaaaatattattctttgtggtggttgaaagtcaaaaaggcttgt-tttgtatttggtgatcatatgtggtggtctagtcctatgtcgtgtt 37322158  T
Q  132 taggcattgg 141  Q
    ||||| ||||    
T  37322157 taggcgttgg 37322148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 6985624 - 6985375
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    |||||||||||| | |||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||| |  ||||||||||||||||||||||||||    
T  6985624 aaaaagaaagttccttagttcaattattagacaaagtaaagtatcattctttgtggtggctgaaagtcaataatgttgtatttatgtttggtgatcagat 6985525  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
    |||| | ||||||||||||||||||||||||||||| |||| ||||||||||  ||| | |||| ||||| ||||||| |||||||||||||||||||||    
T  6985524 gtgggtatcgaatccattgtcgtgtttaggcattggataacaacttgttgta--tttttaaactacttgtatcgttttaagtagtcttttcggtacatct 6985427  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||| |||| ||||||||||||||||||||||||| || |||||||||||||    
T  6985426 tgtgttgagtgggctgctttagcagtgttaatatattccatttttgtttgtt 6985375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 8129673 - 8129425
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    |||||||||||| | |||| |||||||||||||||||||| ||||| || ||||||||| |||||||||  | |||||||||||||||||||||||||||    
T  8129673 aaaaagaaagttccttagttcaattattagataaagtaaagtatcactctttgtggtggctgaaagccagtaaggttgtatttatgtttggtgatcagat 8129574  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||  ||| | ||||| |||| ||||||| ||| || |||||||||||| |    
T  8129573 gtgggtgtcgaatccattgtcgtgtttaggcattggttaacaacttgttgta--tttttaaactgtttgtatcgttttaagttgt-ttttcggtacattt 8129477  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||| |||| ||||||||||||||||||||||||| || |||||||||||||    
T  8129476 tgtgctgagtgggctgctttagcagtgttaatatattccatttttgtttgtt 8129425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 19982083 - 19982333
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    ||||||||||||   |||| |||||||||||||||||||| ||||| ||  |||||||| ||||||| |  | |||||| ||| ||||||||||||||||    
T  19982083 aaaaagaaagttcattagtgcaattattagataaagtaaagtatcagtctatgtggtggctgaaagctagtaaggttgtttttgtgtttggtgatcagat 19982182  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
    |||| | |||||||||||||| |||||||||||||||||||   |||||||||| |||| |||| | ||||||||||| |||||| ||||||||||  ||    
T  19982183 gtggctatcgaatccattgtcctgtttaggcattggttaacattttgttgtaatcttgtaaactacgtgtttcgttttaagtagttttttcggtactcct 19982282  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgt 256  Q
    |||| ||| ||||||  ||||||| ||||||||||||| ||||||| ||||    
T  19982283 tgtgttgaaagggctattttagcaatgttaatataatccatttttgcttgt 19982333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 251
Target Start/End: Original strand, 8440950 - 8441079
Alignment:
Q  123 tgtcgtgtttaggcattggttaaccacttgttgtaattttgt-gaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctg 221  Q
    ||||||||||||||||||||||||||||| || |||||   | || |  ||||| || ||| |||||||||||||||||||||||||| || || |  ||    
T  8440950 tgtcgtgtttaggcattggttaaccacttcttttaattacttagaccaacttgtatcttttatagtagtcttttcggtacatcttgtgctgtgaagattg 8441049  T
Q  222 ctttagcagtgttaatataatctatttttg 251  Q
    || | |||||||||||||| ||||||||||    
T  8441050 ctatggcagtgttaatatattctatttttg 8441079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 26535740 - 26535631
Alignment:
Q  30 tattagataaagtaaaatatcattcattgtggtggatgaaagcc-aaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgt 128  Q
    ||||||| |||||||| ||| |||| ||||||||| |||||||| |||||| |||| ||| | ||||||||||| ||||||| ||| | |||  ||||||    
T  26535740 tattagacaaagtaaagtattattctttgtggtggttgaaagccaaaaaggcttgt-tttgtatttggtgatcatatgtggtagtctagtcctatgtcgt 26535642  T
Q  129 gtttaggcatt 139  Q
    |||||||||||    
T  26535641 gtttaggcatt 26535631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 45226 - 45416
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    |||||||||||| | |||| ||||||||||| |||||||||||| |||| ||||||||| |||||||||   ||||||||||||||||||||||||||||    
T  45226 aaaaagaaagttccttagttcaattattagacaaagtaaaatattattcgttgtggtggctgaaagccattggggttgtatttatgtttggtgatcagat 45325  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcg 197  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| | |||||||||| ||||||| |||||||||||||    
T  45326 gtggttgtcgaatccattgtcgtgtttaggcattggttgacaacttgttgt-attttttaaactgcttgtatcgttttaagtagtcttttcg 45416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 28633691 - 28633924
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||  ||| ||||||||||||||||| ||||||| || || ||||||||    
T  28633691 caattattagataaagtaaagtattattcattgtggtggatgaaagccaaaaggtgtgtttttatgtttggtgatcacatgtggtggttgagtccattgt 28633790  T
Q  126 cgtgtttaggcattggttaaccac-ttgttgtaa-ttttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgct 223  Q
    |||||||||||||||||||||||| || |||||| | | ||||||||||||| || ||| ||||| |||| | ||||||||||||| |||||||  ||||    
T  28633791 cgtgtttaggcattggttaaccacttttttgtaactctggtgaactgcttgtatcttttctagtattcttcttggtacatcttgtgctgagaggattgct 28633890  T
Q  224 ttagcagtgttaatataatctatttttgtttgtt 257  Q
     | ||||||||| ||||||| ||||||| |||||    
T  28633891 atggcagtgttattataatccatttttgcttgtt 28633924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 256
Target Start/End: Complemental strand, 33821115 - 33820904
Alignment:
Q  46 atatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtttaggcattggttaa 145  Q
    |||| |||||||||| ||||||||||||||||   |||| |||||||||||||||||  |||||| || || | ||||||||||||||||||||||||||    
T  33821115 atattattcattgtgatggatgaaagccaaaattattgtttttatgtttggtgatcatttgtggtggttgagttcattgtcgtgtttaggcattggttaa 33821016  T
Q  146 ccacttgttgtaatt-ttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagtgttaatataatct 244  Q
    | |||| |||| ||| |||||||||| |||| || ||| ||||||||||||||||||| |||||| ||||||  ||||| | || |||||||||||||      
T  33821015 ctacttcttgtcattcttgtgaactgtttgtatcttttctagtagtcttttcggtacaccttgtgctgagagaactgctatggcggtgttaatataattc 33820916  T
Q  245 atttttgtttgt 256  Q
    ||||||||||||    
T  33820915 atttttgtttgt 33820904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 26 - 257
Target Start/End: Complemental strand, 15602026 - 15601794
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||||||  ||||||| | |||| |||||||  | | |||||| ||||||||||||| |||  |||||| |||||  ||  |||    
T  15602026 caattattagataaagtaaaatactattcattatagtggttgaaagcacataaggttgtttttatgtttggtggtcatttgtggtggtcgagccccatgt 15601927  T
Q  126 cgtgtttaggcattggttaaccacttgttgtaatt-ttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctt 224  Q
    |||||||||||||||||||||||||| |||||||| ||  ||||  ||||| || ||| |||||||||||||||||||||||||| || || |  ||||     
T  15601926 cgtgtttaggcattggttaaccacttcttgtaattatttagaacaacttgtatcttttatagtagtcttttcggtacatcttgtgctgtgaagattgcta 15601827  T
Q  225 tagcagtgttaatataatctatttttgtttgtt 257  Q
    | ||||||||||||||||||||||||| |||||    
T  15601826 tggcagtgttaatataatctatttttgcttgtt 15601794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 257
Target Start/End: Complemental strand, 3550779 - 3550558
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgttt 132  Q
    |||| |||||||||||| |||| ||||||||| |||||||||||| || |   ||| | |||||||| ||  |||||| ||||| ||  |||||||||||    
T  3550779 tagacaaagtaaaatattattctttgtggtggttgaaagccaaaaaggctagctttgtatttggtgaacatttgtggtggtcgagtcttttgtcgtgttt 3550680  T
Q  133 aggcattggttaaccacttgttgta-attttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagt 231  Q
    || |||||  ||  ||||| || ||  || |||||||||||||||   ||||||||||| |||| || |||||||||| ||||  | ||| | || ||||    
T  3550679 agacattgaatagacactttttatatcttgtgtgaactgcttgtt---tttttagtagtatttttggcacatcttgtgctgaggagactggtataacagt 3550583  T
Q  232 gttaatataatctatttttgtttgtt 257  Q
    |||||||| ||| ||||||| |||||    
T  3550582 gttaatat-atcaatttttgcttgtt 3550558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 8809887 - 8809963
Alignment:
Q  180 tttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    ||||||||||| ||||||| |||||||||| ||||  | ||||| ||| ||||||||||||||||||||||| |||||    
T  8809887 tttttagtagt-ttttcggcacatcttgtgctgaggagactgctatagtagtgttaatataatctatttttgcttgtt 8809963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 13649455 - 13649563
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaaggg-ttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtt 131  Q
    |||| |||||||||||| |||| ||||||||| |||||||||||| || |||| |||   ||||||||||| ||||||| ||||| |||  |||||||||    
T  13649455 tagacaaagtaaaatattattctttgtggtggttgaaagccaaaaaggcttgt-tttgcatttggtgatcatatgtggtggtcgagtcctatgtcgtgtt 13649553  T
Q  132 taggcattgg 141  Q
    ||||| ||||    
T  13649554 taggcgttgg 13649563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 20013763 - 20013870
Alignment:
Q  32 ttagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtt 131  Q
    ||||| |||||||||||||| || ||||||||| |||||||||||| || | | ||| | |||||||| || ||||||| ||| |||||  |||||||||    
T  20013763 ttagacaaagtaaaatatcactcgttgtggtggttgaaagccaaaaaggctct-tttgtttttggtga-cacatgtggtggtctaatcctctgtcgtgtt 20013860  T
Q  132 taggcattgg 141  Q
    ||||||||||    
T  20013861 taggcattgg 20013870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 18588049 - 18587941
Alignment:
Q  33 tagataaagtaaaatatcattcattgtggtggatgaaagccaaaaggg-ttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtt 131  Q
    |||| |||||||| ||| |||| ||||||||| ||||| |||||| || |||| ||| | ||||||||||| ||||||| ||| | |||  |||||||||    
T  18588049 tagacaaagtaaagtattattctttgtggtggttgaaatccaaaaaggcttgt-tttgtatttggtgatcatatgtggtggtctagtcctatgtcgtgtt 18587951  T
Q  132 taggcattgg 141  Q
    ||||| ||||    
T  18587950 taggcgttgg 18587941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 13410 - 13661
Alignment:
Q  6 aaaaagaaagtttcatagtacaattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagat 105  Q
    ||||||||||||   |||| |||||||||||||||||||| ||||| || ||||||||| ||||||| |  | |||| | ||| | ||||||||||||||    
T  13410 aaaaagaaagttcactagtgcaattattagataaagtaaagtatcagtctttgtggtggctgaaagctagtaaggttttttttgtttttggtgatcagat 13509  T
Q  106 gtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatct 205  Q
    |||| |||||||| ||||||| |||||||||||||||||||   |||||||||| |||| ||||| | || ||||||||| |||| ||||||||||||||    
T  13510 gtgggtgtcgaattcattgtcttgtttaggcattggttaacattttgttgtaatcttgtaaactgttggtctcgtttttaatagttttttcggtacatct 13609  T
Q  206 tgtgatgagagggctgctttagcagtgttaatataatctatttttgtttgtt 257  Q
    |||| ||| ||||||  ||| ||||||||||||||||| ||||||| |||||    
T  13610 tgtgctgaaagggctatttttgcagtgttaatataatccatttttgcttgtt 13661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 45165997 - 45166221
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||| ||||| || || |||||| ||||||| |  | |||||| ||| |||||||||||||||||||| |||||||||||||||    
T  45165997 caattattagataaagtaaagtatcagtctttatggtggctgaaagctagtaaggttgtttttgtgtttggtgatcagatgtggatgtcgaatccattgt 45166096  T
Q  126 cgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgcttt 225  Q
    | |||||||||||||||||||   ||||||| || |||| |||||| ||||||||||| |||||| ||||||||| | |||||| ||| ||||||  |||    
T  45166097 cctgtttaggcattggttaacattttgttgt-atcttgtaaactgcgtgtttcgttttaagtagttttttcggtaaaccttgtgctgaaagggctatttt 45166195  T
Q  226 agcagtgttaatataatctatttttg 251  Q
    |||| ||||||||||||| |||||||    
T  45166196 agcaatgttaatataatccatttttg 45166221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 257
Target Start/End: Complemental strand, 2317593 - 2317377
Alignment:
Q  42 taaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtttaggcattgg 141  Q
    |||| ||| ||||||| ||||||||||||||| | | |||||| |||||||||||||||||  |||||| ||||| ||  ||||||||||||||||||||    
T  2317593 taaagtattattcattatggtggatgaaagcccataaggttgtttttatgtttggtgatcaattgtggtggtcgagtctcttgtcgtgtttaggcattgg 2317494  T
Q  142 ttaaccacttgttgtaatt-ttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagtgttaatata 240  Q
    ||| |||||| |||||||| ||| ||||||||||| || ||| ||||||||||||||||||| |||||| || || | ||||| | | ||||||||||||    
T  2317493 ttagccacttcttgtaattcttgagaactgcttgtatcttttctagtagtcttttcggtacaccttgtgctgcgaagactgctatggtagtgttaatata 2317394  T
Q  241 atctatttttgtttgtt 257  Q
    ||| |||||| ||||||    
T  2317393 atccatttttatttgtt 2317377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 26 - 257
Target Start/End: Complemental strand, 39694173 - 39693943
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||||| |  | ||| || ||| |||||||||||||||||||| |||||||||||||||    
T  39694173 caattattagataaagtaaagtatcaatctttgtggtggctgaaagctagtaaggtggtttttgtgtttggtgatcagatgtggatgtcgaatccattgt 39694074  T
Q  126 cgtgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgcttt 225  Q
    | |||||||||||||  ||||   | ||||| ||||||| |||||  ||||||||  | |||||| ||||||||||| |||||| ||| ||||||  ||     
T  39694073 cttgtttaggcattgcctaacttttggttgt-attttgtaaactgtgtgtttcgtgctaagtagttttttcggtacaccttgtgctgaaagggctattta 39693975  T
Q  226 agcagtgttaatataatctatttttgtttgtt 257  Q
    ||||||||||||||| || ||||||| |||||    
T  39693974 agcagtgttaatatattccatttttgcttgtt 39693943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 42964690 - 42964797
Alignment:
Q  149 cttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttagcagtgttaatataatctattt 248  Q
    |||||||||||||| | |||||||||| ||||||| | || |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  42964690 cttgttgtaatttt-taaactgcttgtatcgttttaaatattcttttcggtacatcttgtgctgagggggctgctttagcagtgttaatataatccattt 42964788  T
Q  249 ttgtttgtt 257  Q
    |||||||||    
T  42964789 ttgtttgtt 42964797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 6344078 - 6344310
Alignment:
Q  26 caattattagataaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgt 125  Q
    |||||||||||||||||||||||  ||||||| |||||| ||||||   | | |||||| |||| ||||||||||||  |||||| |||||  ||  |||    
T  6344078 caattattagataaagtaaaatactattcattatggtggttgaaagtacataaggttgtttttacgtttggtgatcatttgtggtggtcgagccctatgt 6344177  T
Q  126 cgtgtttaggcattggttaaccacttgttgtaattt-tgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctt 224  Q
    |||||||||||||||| ||||||||| ||||||||| |  || |   |||| || ||| |||||||||||||||||||||||||| || || |  ||||     
T  6344178 cgtgtttaggcattgggtaaccacttcttgtaatttcttagaccaatttgtatcttttatagtagtcttttcggtacatcttgtgctgtgaagattgcta 6344277  T
Q  225 tagcagtgttaatataatctatttttgtttgtt 257  Q
    |  ||||||||||||| || ||||||| |||||    
T  6344278 tgacagtgttaatatattccatttttgcttgtt 6344310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 32937480 - 32937632
Alignment:
Q  92 tttggtgatcagatgtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattttg--tgaactgcttgtttcgtttttagtag 189  Q
    |||||||| ||  |||||| ||||| ||| ||||| |||||||||||||| | | | |||| ||||| ||||  ||||||||||||| | |||||||| |    
T  32937480 tttggtgaccaattgtggtggtcgagtcctttgtcttgtttaggcattggctgatctcttggtgtaactttgactgaactgcttgtt-cttttttagtgg 32937578  T
Q  190 tcttttcggtacatcttgtgatgagagggctgctttagcagtgttaatataatc 243  Q
    |||||| |||| | ||| || ||||||| ||||| ||||| | |||||||||||    
T  32937579 tctttttggtaaaccttatgctgagaggactgctatagcactcttaatataatc 32937632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 17507360 - 17507445
Alignment:
Q  56 ttgtggtggatgaaagccaaaaggg-ttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtttaggcattgg 141  Q
    ||||||||| |||||||||||| || |||| ||||| |||||||| || ||||||| ||| | |||  |||||||||||||||||||    
T  17507360 ttgtggtggttgaaagccaaaaaggcttgt-tttatttttggtgaccatatgtggtggtctagtcctatgtcgtgtttaggcattgg 17507445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 17545854 - 17545769
Alignment:
Q  56 ttgtggtggatgaaagccaaaaggg-ttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtttaggcattgg 141  Q
    ||||||||| |||||||||||| || |||| ||||| |||||||| || ||||||| ||| | |||  |||||||||||||||||||    
T  17545854 ttgtggtggttgaaagccaaaaaggcttgt-tttatttttggtgaccatatgtggtggtctagtcctatgtcgtgtttaggcattgg 17545769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0750 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 5815 - 5688
Alignment:
Q  128 tgtttaggcattggttaaccacttgttgtaattttgtgaactgcttgtttcgtttttagtagtcttttcggtacatcttgtgatgagagggctgctttag 227  Q
    ||||||||||||||||||| |||||||||| |||||  || ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  5815 tgtttaggcattggttaacaacttgttgtatttttg--aattgcttgtatcgtttttagtagtcttttcggtacatcttgtgctgagtgggctgctttag 5718  T
Q  228 cagtgttaatataatctatttttgtttgtt 257  Q
    ||||||||||||| || |||||||||||||    
T  5717 cagtgttaatatattccatttttgtttgtt 5688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 87651 - 87753
Alignment:
Q  38 aaagtaaaatatcattcattgtggtggatgaaagccaaaagggttgtatttatgtttggtgatcagatgtggttgtcgaatccattgtcgtgtttaggca 137  Q
    |||||||||||| |||| ||||||||| |||||||||| | |||||| ||| | ||| |||| ||  |||||| ||||| ||||||||||||||||||||    
T  87651 aaagtaaaatattattctttgtggtggttgaaagccaataaggttgtctttgtttttagtgaacaattgtggtggtcgagtccattgtcgtgtttaggca 87750  T
Q  138 ttg 140  Q
    |||    
T  87751 ttg 87753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 6453 - 6493
Alignment:
Q  32 ttagataaagtaaaatatcattcattgtggtggatgaaagc 72  Q
    |||||||||||||||| | |||||||||||||| |||||||    
T  6453 ttagataaagtaaaatcttattcattgtggtggttgaaagc 6493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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