View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5587_low_22 (Length: 270)

Name: NF5587_low_22
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5587_low_22
NF5587_low_22
[»] chr3 (8 HSPs)
chr3 (1-82)||(53343106-53343187)
chr3 (131-193)||(24734018-24734080)
chr3 (1-82)||(52717679-52717760)
chr3 (1-82)||(32558219-32558300)
chr3 (38-82)||(45781551-45781595)
chr3 (39-82)||(7050983-7051026)
chr3 (38-82)||(25694865-25694909)
chr3 (38-82)||(52717123-52717167)
[»] chr5 (3 HSPs)
chr5 (1-82)||(38558947-38559028)
chr5 (38-78)||(6695792-6695832)
chr5 (38-82)||(6697372-6697416)
[»] chr8 (4 HSPs)
chr8 (1-82)||(40600623-40600704)
chr8 (41-82)||(14706279-14706320)
chr8 (20-69)||(16910287-16910336)
chr8 (20-76)||(27244277-27244333)
[»] chr4 (1 HSPs)
chr4 (20-81)||(21838234-21838295)
[»] chr7 (1 HSPs)
chr7 (20-82)||(22297881-22297943)
[»] chr6 (1 HSPs)
chr6 (27-77)||(14050191-14050241)
[»] chr1 (1 HSPs)
chr1 (1-82)||(8641867-8641948)
[»] chr2 (3 HSPs)
chr2 (38-82)||(1522396-1522440)
chr2 (38-82)||(1521650-1521694)
chr2 (16-76)||(10174678-10174738)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 53343187 - 53343106
Alignment:
Q  1 taaacctttaatttaaatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  53343187 taaacctttaatttaaatctgatggtgtataaaggtggtccaccgatgaaccacttatttgatggttcatcctagaatccac 53343106  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 24734080 - 24734018
Alignment:
Q  131 taaagcatcacagttttgttcgaaagtttcacaacacttcctacgtcacatattttccatcag 193  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  24734080 taaagcatcacagttttgttcgaaagttggacaacactttctacgtcacatattttccatcag 24734018  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 52717679 - 52717760
Alignment:
Q  1 taaacctttaatttaaatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||||||||||||||  |||||||| ||| || ||||| | |||||||||||| ||||||||||| ||||||||||||    
T  52717679 taaacctttaatttaaatcgaatggtgtacaaaagtggtccatccatgaaccatttagttgatggttcaccctagaatccac 52717760  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32558300 - 32558219
Alignment:
Q  1 taaacctttaatttaaatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||||||||||||||  |||||||| ||| ||  |||  || ||||||| ||| ||||||||||| ||||||||||||    
T  32558300 taaacctttaatttaaatcgaatggtgtacaaaagtgatccgtcggtgaaccacttagttgatggttcaccctagaatccac 32558219  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 45781595 - 45781551
Alignment:
Q  38 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||| |||||||||| |||||||||||| ||||||||||||    
T  45781595 gtccaccggtgaaccatttgtttgatggttcaccctagaatccac 45781551  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 7050983 - 7051026
Alignment:
Q  39 tccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||||||| || ||||||||||||||| ||||||||||||    
T  7050983 tccaccgatgaatcacttatttgatggttcaccctagaatccac 7051026  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 25694865 - 25694909
Alignment:
Q  38 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||||||||||| |||| ||||||||||  |||||||||||    
T  25694865 gtccaccgatgaaccacttatatgatggttcactctagaatccac 25694909  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 52717167 - 52717123
Alignment:
Q  38 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||| |||| || ||||||||||||||| ||||||||||||    
T  52717167 gtccaccggtgaatcagttatttgatggttcaccctagaatccac 52717123  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38559028 - 38558947
Alignment:
Q  1 taaacctttaatttaaatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  38559028 taaacctttaatttaaatctgatggtgtataaaggtggtccaccgatgaaccacttatttaatggttcatcctagaatccac 38558947  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 6695832 - 6695792
Alignment:
Q  38 gtccaccgatgaaccatttatttgatggttcatcctagaat 78  Q
    |||||||| ||||||| ||||||||||||||| ||||||||    
T  6695832 gtccaccggtgaaccacttatttgatggttcaccctagaat 6695792  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 6697372 - 6697416
Alignment:
Q  38 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||| ||| ||||||| ||||||||||||||| ||||||||||||    
T  6697372 gtccgccggtgaaccacttatttgatggttcaccctagaatccac 6697416  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 40600623 - 40600704
Alignment:
Q  1 taaacctttaatttaaatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |||||||    
T  40600623 taaacctttaatttaaatttgatggtgtataaagatggtccaccgatgaaccacttatttgatggttcatcctaaaatccac 40600704  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 14706320 - 14706279
Alignment:
Q  41 caccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    ||||||||||| |||| |||||||||||| ||||||||||||    
T  14706320 caccgatgaactatttgtttgatggttcaccctagaatccac 14706279  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 16910336 - 16910287
Alignment:
Q  20 tgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttca 69  Q
    ||||||| || |||||| |||||||||||||||| ||| |||||||||||    
T  16910336 tgatggtatacaaaggtggtccaccgatgaaccacttagttgatggttca 16910287  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 27244277 - 27244333
Alignment:
Q  20 tgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctaga 76  Q
    ||||||| |||||| || |||||||| ||||| ||||| ||||||||||| ||||||    
T  27244277 tgatggtatataaaagtggtccaccggtgaactatttaattgatggttcaccctaga 27244333  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 21838234 - 21838295
Alignment:
Q  20 tgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatcca 81  Q
    ||||||| |||||| || |||||||||||||||| ||| |||||||||||||||||||||||    
T  21838234 tgatggtatataaaagtggtccaccgatgaaccacttaattgatggttcatcctagaatcca 21838295  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 22297881 - 22297943
Alignment:
Q  20 tgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    ||||||| |||||| || |||||||||||||||| ||| |||||||||||  |||||||||||    
T  22297881 tgatggtatataaaagtggtccaccgatgaaccacttaattgatggttcactctagaatccac 22297943  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 14050241 - 14050191
Alignment:
Q  27 gtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaa 77  Q
    ||||||| ||||| ||||||||||||| || ||||||||||||||||||||    
T  14050241 gtataaaagtagttcaccgatgaaccacttgtttgatggttcatcctagaa 14050191  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 8641867 - 8641948
Alignment:
Q  1 taaacctttaatttaaatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||||||||||||||  |||||||| ||| || ||||| ||   ||||| ||| ||||||||||| ||||||||||||    
T  8641867 taaacctttaatttaaatcaaatggtgtacaaaagtggtccatcggaaaaccacttagttgatggttcaccctagaatccac 8641948  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 1522396 - 1522440
Alignment:
Q  38 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||| ||||||| || |||||||||||||||||||||||||    
T  1522396 gtccaccggtgaaccacttgtttgatggttcatcctagaatccac 1522440  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 1521694 - 1521650
Alignment:
Q  38 gtccaccgatgaaccatttatttgatggttcatcctagaatccac 82  Q
    |||||||| ||||||| || |||||||||||| ||||||||||||    
T  1521694 gtccaccggtgaaccacttgtttgatggttcaccctagaatccac 1521650  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 10174678 - 10174738
Alignment:
Q  16 aatctgatggtgtataaaggtagtccaccgatgaaccatttatttgatggttcatcctaga 76  Q
    ||||||| |||  ||||| || |||||||| ||||||||||| ||||||||||| ||||||    
T  10174678 aatctgacggtaaataaaagtggtccaccggtgaaccatttagttgatggttcaccctaga 10174738  T

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