View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_low_24 (Length: 258)
Name: NF5587_low_24
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 4484951 - 4485188
Alignment:
| Q |
19 |
agcatgcactatttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcaccagaaaaggccatcgattattcatcaacggtggggttatg |
118 |
Q |
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| T |
4484951 |
agcatgcactatttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcactagaaaaggccatcgattattcatcaaaggtggggtaatg |
4485050 |
T |
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| Q |
119 |
gtaggtgctgcaaaggatatgataggaacttgagctttgtttcctatatcttccattatagctgcttctggccatgtgtgcttatccctataatcacttg |
218 |
Q |
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| T |
4485051 |
gtaggtgctgcaaaggatatgataggaacttgagctttgcttcctatatcttccattatagctgcttctggccatgtgtgc--atccctataatcacttg |
4485148 |
T |
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| Q |
219 |
caccttttgcacattaatcatctcttcggctgcaatacac |
258 |
Q |
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| T |
4485149 |
caccttttgcacattaatcatctcttcggctgcaatacac |
4485188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 4489122 - 4489355
Alignment:
| Q |
23 |
tgcactatttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcaccagaaaaggccatcgattattcatcaacggtggggttatggtag |
122 |
Q |
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|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| ||| | |||||| |||||||| ||||||| |
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| T |
4489122 |
tgcactatttctgcaatgcattttatatatgctgtaccagtgttagctagtctcaccagaaaaggccaccgagcttccatcaatggtggggtaatggtag |
4489221 |
T |
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| Q |
123 |
gtgctgcaaaggatatgataggaacttgagctttgtttcctatatcttccattatagctgcttctggccatgtgtgcttatccctataatcacttgcacc |
222 |
Q |
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| T |
4489222 |
gagctacaaaggatatgactggaacttgagctttgcttcctacttcagccaccatagctgcttcttgccatgtttgc--atccctataatcacttgcacc |
4489319 |
T |
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| Q |
223 |
ttttgcacattaatcatctcttcggctgcaatacac |
258 |
Q |
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| T |
4489320 |
ttttgcacattaatcatctcttcggctgcaatacac |
4489355 |
T |
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