View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_low_27 (Length: 253)
Name: NF5587_low_27
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 46874923 - 46874686
Alignment:
| Q |
1 |
ttaccaggccacaaactgtgttctgaattgattgcgaaacagacatacgcaaggagaaactaataaattgagaagctctagtaatgtaaaatttcttact |
100 |
Q |
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| T |
46874923 |
ttaccaggccacaaactgtgttctgaattgattgcgaaacagacatacgcaaggagaaactaataaattgagaagctctagtaatgtaaaatttcttact |
46874824 |
T |
|
| Q |
101 |
tcacatattaatttatgagtcttgaactcatttgagaagctttcataaatcttacaacgaataaaatacagtttggttctccagttatccacaagtccag |
200 |
Q |
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| T |
46874823 |
tcacatattaatttatgagtcttgaactcatttgagaagctttcataaatcttacaacgaataaaatacagtttggttctccagttatccacaagtccag |
46874724 |
T |
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| Q |
201 |
tacctgtatttcatacagggaaaaatgcagcacccatg |
238 |
Q |
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| T |
46874723 |
tacctgtatttcatacagggaaaaatgcagcacccatg |
46874686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 46892597 - 46892525
Alignment:
| Q |
109 |
taatttatgagtcttgaactcatttgagaagctttcataaatcttacaacgaataaaatacagtttggttctc |
181 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
46892597 |
taatttatgagtctagaactcaattgagaagctttcataaatcttactatgaataaaatacagtttggttctc |
46892525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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