View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_low_28 (Length: 251)
Name: NF5587_low_28
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 20135574 - 20135352
Alignment:
| Q |
1 |
cccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20135574 |
cccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcatca |
20135475 |
T |
|
| Q |
101 |
aaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctgaagaaatc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20135474 |
aaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctgaagaaatc |
20135375 |
T |
|
| Q |
201 |
atcattccaagcatgtatgggaa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
20135374 |
atcattccaagcatgtatgggaa |
20135352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44356497 - 44356719
Alignment:
| Q |
1 |
cccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44356497 |
cccaaacaacatccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcatca |
44356596 |
T |
|
| Q |
101 |
aaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctgaagaaatc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44356597 |
aaatgagaatacgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctgaagaaatc |
44356696 |
T |
|
| Q |
201 |
atcattccaagcatgtatgggaa |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
44356697 |
atcattccaagcatgtatgggaa |
44356719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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