View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_low_3 (Length: 496)
Name: NF5587_low_3
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 148 - 482
Target Start/End: Original strand, 7499702 - 7500035
Alignment:
| Q |
148 |
ttcatgatcaagaaacataaaaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatataaacaattagatcagacttcagagc |
247 |
Q |
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| T |
7499702 |
ttcatgatctagaaacataaaaaactgagacatcattctaaaaccagccatgtattaacagatagtgc-atatataaacaattagatcagacttcagagc |
7499800 |
T |
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| Q |
248 |
cacagaaacttaagaactgttattgaagaataatttttcccattannnnnnnnctcagcagccgaaatagatcaaatatttttcagtcgtgtgaaatttt |
347 |
Q |
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| T |
7499801 |
cacagaaactttagaactgttattgaagaataatttttcccattattttttttcttagcagccgaaatagatcaaatatttttcagtcgtgtgaaatttt |
7499900 |
T |
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| Q |
348 |
atttttatagtttggaaagatcacacatggagtttttgtattactatggcagcatatttcattagtaaataaaaactcctcaatagcagtataaactaga |
447 |
Q |
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| T |
7499901 |
atttttatagtttggaaagatcacacatggagtttttgtattactatggcagcatatttcattagcaaataaaaactcctcaatagcagtataaactaga |
7500000 |
T |
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| Q |
448 |
tgtttcctttaatccatctatgataaagcatttgt |
482 |
Q |
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| T |
7500001 |
tgtttcctttaatccatctatgataaagcatttgt |
7500035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 7488311 - 7488416
Alignment:
| Q |
44 |
tgttggaaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacatagggtattgttttataaagaatcatgagactatggctatcaga |
143 |
Q |
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| T |
7488311 |
tgttggaaaagagggatttgatgtgtattacggtgtgacatgagagaagagttacatagggttttgtttcatgaaggatcatgagattaggactatcaga |
7488410 |
T |
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| Q |
144 |
catgtt |
149 |
Q |
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| T |
7488411 |
catgtt |
7488416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 8139134 - 8139017
Alignment:
| Q |
168 |
aaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatataaa-caattagatcagacttcagagccacagaaacttaagaactg |
266 |
Q |
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| T |
8139134 |
aaaactgagacataattccaaagtcagccatgtattaactgatagtgc-atacataaaacaattagatgaga-------gccacagaaactttagaactg |
8139043 |
T |
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| Q |
267 |
ttattgaagaataatttttcccatta |
292 |
Q |
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| T |
8139042 |
ttacggaagaataatttttcccatta |
8139017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 6943733 - 6943675
Alignment:
| Q |
43 |
ttgttggaaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacata |
101 |
Q |
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| T |
6943733 |
ttgttggaaaagggggatttgatgtgtattaggttgtcacatgagagaagggttacata |
6943675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 181
Target Start/End: Complemental strand, 8139198 - 8139168
Alignment:
| Q |
151 |
atgatcaagaaacataaaaaactgagacatc |
181 |
Q |
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| T |
8139198 |
atgatcaagaaacataaaaaactgagacatc |
8139168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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