View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_low_33 (Length: 240)
Name: NF5587_low_33
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_33 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 5829161 - 5829239
Alignment:
| Q |
163 |
atagtatggttttaactctttt-gttttgttatatatgataactaagctgcattaatgtgacaacaggagtatttttgc |
240 |
Q |
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| T |
5829161 |
atagtatggttttaactctttttgttttgttatatacgataactaagctgcattaatgtgacaacaggagtatttttgc |
5829239 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 5822853 - 5822787
Alignment:
| Q |
19 |
cccaagaccaatacatgatataagaaaataactaagtgattcagttcaagtgagtaatgagctctac |
85 |
Q |
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| T |
5822853 |
cccaagaccaatacatgatataagaaaataactaagtgattcagttcaagtgggtaatgagctctac |
5822787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 5829026 - 5829088
Alignment:
| Q |
19 |
cccaagaccaatacatgatataagaaaataactaagtgattcagttcaagtgagtaatgagct |
81 |
Q |
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| T |
5829026 |
cccaagacaaatacatgatataagaaaataattaactgattcagttcaagttggtaatgagct |
5829088 |
T |
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