View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5587_low_36 (Length: 237)
Name: NF5587_low_36
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31151591 - 31151370
Alignment:
| Q |
1 |
aacctgcaacttgtgtgagagtgaaaatgatgtatttttgtatttaattgggtgagtggggtatattgatatttgttcattggtcattactcaccttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31151591 |
aacctgcaacttgtgtgagagtgaaaatgatgtatttttgtatttaattgggtgagtggggtatattgatatttgttcattggtcattactcaccttgct |
31151492 |
T |
|
| Q |
101 |
tgttttactttataaattatacatttcataggttgttaggtcctatctaccacctctatccttcgttccttccactgcagtaatctactctacgcattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31151491 |
tgttttactttataaattatacatttcataggttgttaggtcctatctaccacctctatccttcgttccttccactgcagtaatctactctacgcattaa |
31151392 |
T |
|
| Q |
201 |
taaacatatatcatcctctaac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31151391 |
taaacatatatcatcctctaac |
31151370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University