View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5587_low_5 (Length: 440)

Name: NF5587_low_5
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5587_low_5
NF5587_low_5
[»] chr5 (1 HSPs)
chr5 (19-427)||(38559005-38559412)
[»] chr8 (1 HSPs)
chr8 (53-427)||(40600277-40600646)
[»] chr3 (9 HSPs)
chr3 (27-317)||(53343249-53343534)
chr3 (53-176)||(52715979-52716102)
chr3 (348-427)||(53343164-53343244)
chr3 (19-171)||(32558387-32558540)
chr3 (55-171)||(52717477-52717593)
chr3 (349-422)||(52717623-52717697)
chr3 (352-422)||(7050462-7050533)
chr3 (19-171)||(7050565-7050716)
chr3 (349-422)||(32558282-32558357)
[»] chr1 (5 HSPs)
chr1 (19-162)||(8641628-8641772)
chr1 (349-422)||(8641811-8641885)
chr1 (55-161)||(45500343-45500450)
chr1 (68-133)||(51198892-51198957)
chr1 (391-431)||(45500661-45500701)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 38559412 - 38559005
Alignment:
Q  19 gtatacagaagggttactgagttatggaatcaattcaattccttttactgccattacaaaccatggattacattttctctttgaatcaaaaccaaatccg 118  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38559412 gtatatagaagggttaccgagttatggaatcaactcaattccttttactgccattacaaaccatggattacattttctctttgaatcaaaaccaaatcca 38559313  T
Q  119 tgaaagggtattcattaattttgaattggagtggtgaagtaaaatgagtttttgtttcnnnnnnnnnnnnnnaaggaaaagaagcagnnnnnnnattata 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||       ||||||    
T  38559312 agaaagggtattcattaattttgaattggagtggtgaagtaaaatgagtttttgtttctttttttttaa---aaggaaaagaagcagtttttttattata 38559216  T
Q  219 tattttgaataaatcctttaaaaagatggaggttgtggtgatggtggaggggcaatgtattttgtggtggtaacattgttgtaaaactcatcagaatcac 318  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||    
T  38559215 tattttgaataaatcctttgaaaagatggaggttgtggtgatggtggaggggcaatgtattttgcggttgtaacattgttgtaaaactcatcagaattac 38559116  T
Q  319 agagtcaaacgtgagaaagatgaggctgataacaaggatagtgtgcaaaaatatac-ttgtgttctcac-tttgtctctaacacatctaaacctttaatt 416  Q
    | || |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  38559115 aaagccaaacgtgagaaagatgaggctgacaacaaggatagtgtgcaaaaatatactttgtgttctcacttttgtctctaacacatctaaacctttaatt 38559016  T
Q  417 taaatctgatg 427  Q
    |||||||||||    
T  38559015 taaatctgatg 38559005  T

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Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 53 - 427
Target Start/End: Original strand, 40600277 - 40600646
Alignment:
Q  53 tcaattccttttactgccattacaaaccatggattacattttctctttgaatcaaaaccaaatccgtgaaagggtattcattaattttgaattggagtgg 152  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  40600277 tcaattccttttactaccattacaaaccatggattacgttttctcgttgaatcaaaaccaaatccgagaaagggtatttataaattttgaattggagtgg 40600376  T
Q  153 tgaagtaaaatgagtttttgtttcnnnnnnnnnnnnnnaaggaaaagaagcagnnnnnnnattatatattttgaataaatcctttaaaaagatggaggtt 252  Q
    ||||||||||||||||||||||||              ||||||||||| | |       ||||||||||||||||||||||||| ||||||||||||||    
T  40600377 tgaagtaaaatgagtttttgtttcatttttta------aaggaaaagaatccgtttttttattatatattttgaataaatcctttgaaaagatggaggtt 40600470  T
Q  253 gtggtgatggtggaggggcaatgtattttgtggtggtaacattgttgtaaaactcatcagaatcacagagtcaaacgtgagaaagatgaggctgataaca 352  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40600471 gtggtgacggtggaggggcaatatattttgtggttgtaacattgttgtaaaactcatcagaatcacagagtcaaacgtgagaaagatgaggctgataaca 40600570  T
Q  353 aggatagtgtgcaaaaatatacttgtgttctcac-tttgtctctaacacatctaaacctttaatttaaatctgatg 427  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||    
T  40600571 aggatattgtgcaaaaatatatttgtgttctcacttttgtctctaacacgtctaaacctttaatttaaatttgatg 40600646  T

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Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 27 - 317
Target Start/End: Complemental strand, 53343534 - 53343249
Alignment:
Q  27 aagggttactgagttatggaatcaattcaattccttttactgccattacaaaccatggattacattttctctttgaatcaaaaccaaatccgtgaaaggg 126  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||| |    
T  53343534 aagggttactgagttatggaatcaactcaatttcttttactgccgttgcaaaccatggattacgttttctctttgaatcaaaaccaaatccgagaaagcg 53343435  T
Q  127 tattcattaattttgaattggagtggtgaagtaaaatgagtttttgtttcnnnnnnnnnnnnnnaaggaaaagaagcagnnnnnnnattatatattttga 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||              ||||||| ||||||        ||||||||||||||    
T  53343434 tattcataaattttgaattggagtggtgaagtaaaatgagtttttgtttc-----tttcttttaaaggaaaggaagcaatttttttattatatattttga 53343340  T
Q  227 ataaatcctttaaaaagatggaggttgtggtgatggtggaggggcaatgtattttgtggtggtaacattgttgtaaaactcatcagaatca 317  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  53343339 ataaatcctttgaaaagatggaggttgtggtgatggtggaggggcaatatattttgtggttgtaacattgttgtaaaactcatcggaatca 53343249  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 52715979 - 52716102
Alignment:
Q  53 tcaattccttttactgccattacaaaccatggattacattttctctttgaatcaaaaccaaatccgtgaaagggtattcattaattttgaattggagtgg 152  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  52715979 tcaattccttttactgccattacaaaccatggattacgttttctctttgaatcaaaaccaaatctgagaaagggtattcataaattttgaattggagtgg 52716078  T
Q  153 tgaagtaaaatgagtttttgtttc 176  Q
    ||||||||||||||||||||||||    
T  52716079 tgaagtaaaatgagtttttgtttc 52716102  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 348 - 427
Target Start/End: Complemental strand, 53343244 - 53343164
Alignment:
Q  348 taacaaggatagtgtgcaaaaatatacttgtgttctcac-tttgtctctaacacatctaaacctttaatttaaatctgatg 427  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  53343244 taacaaggatagtgtgcaaaaatatacttgtgttctcacttttgtctctaacacatttaaacctttaatttaaatctgatg 53343164  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 32558540 - 32558387
Alignment:
Q  19 gtatacagaagggttac-tgagttatggaatcaattcaattccttttactgccattacaaaccatggattacattttctctttgaatcaaaaccaaatcc 117  Q
    |||| |||||||||||| ||| |||| | |||||   ||||||||||| || |||| ||||| ||| |||   |||||||||| ||||||||||||||||    
T  32558540 gtattcagaagggttacgtgacttattgcatcaacctaattccttttattgtcatttcaaactatgaattgagttttctctttcaatcaaaaccaaatcc 32558441  T
Q  118 gtgaaagggtattcattaattttgaattggagtggtgaagtaaaatgagttttt 171  Q
    | |||||||| |||||  |||||||||||||| |||||||||||| ||| ||||    
T  32558440 gagaaagggtgttcatagattttgaattggaggggtgaagtaaaaggagatttt 32558387  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 52717477 - 52717593
Alignment:
Q  55 aattccttttactgccattacaaaccatggattacattttctctttgaatcaaaaccaaatccgtgaaagggtattcattaattttgaattggagtggtg 154  Q
    ||||||||||| ||||||| ||||| ||| |||   |||||||||| |||||||||||||| || |||||||| |||||  |||||||||||||| ||||    
T  52717477 aattccttttattgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattcgagaaagggtgttcatagattttgaattggagaggtg 52717576  T
Q  155 aagtaaaatgagttttt 171  Q
    |||||||| ||| ||||    
T  52717577 aagtaaaaggagatttt 52717593  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 52717623 - 52717697
Alignment:
Q  349 aacaaggatagtgtgcaaaaatatacttgtgttctcactttgtc-tctaacacatctaaacctttaatttaaatc 422  Q
    ||||||||||||||||| || |||||||||||||||| ||| |  ||||||||||||||||||||||||||||||    
T  52717623 aacaaggatagtgtgcagaagtatacttgtgttctcatttttttgtctaacacatctaaacctttaatttaaatc 52717697  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 7050533 - 7050462
Alignment:
Q  352 aaggatagtgtgcaaaaatatacttgtgttctcactttgtc-tctaacacatctaaacctttaatttaaatc 422  Q
    |||||||||||||| || |||||||||||||||| ||| |  ||||||||||||||||||||||||||||||    
T  7050533 aaggatagtgtgcagaagtatacttgtgttctcatttttttgtctaacacatctaaacctttaatttaaatc 7050462  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 7050716 - 7050565
Alignment:
Q  19 gtatacagaagggttac-tgagttatggaatcaattcaattccttttactgccattacaaaccatggattacattttctctttgaatcaaaaccaaatcc 117  Q
    |||| |||||||||||| ||| |||||| |||||   ||||||||||| |||||||  |||| ||| |||   ||||||||||  |||||||||||||||    
T  7050716 gtattcagaagggttacgtgacttatggcatcaacctaattccttttattgccattttaaactatgaattgagttttctctttcgatcaaaaccaaatcc 7050617  T
Q  118 gtgaaagggtattcattaattttgaattggagtggtgaagtaaaatgagttttt 171  Q
    | ||||  || |||||  |||||||||||||| |||||||||||| ||| ||||    
T  7050616 gagaaa--gtgttcatagattttgaattggaggggtgaagtaaaaggagatttt 7050565  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 32558357 - 32558282
Alignment:
Q  349 aacaaggatagtgtgcaaaaatatacttgtgttctcactttgtct--ctaacacatctaaacctttaatttaaatc 422  Q
    ||||||||||||||||| || ||||||| |||||||| ||| | |  |||||| ||||||||||||||||||||||    
T  32558357 aacaaggatagtgtgcagaagtatacttatgttctcattttttttgtctaacatatctaaacctttaatttaaatc 32558282  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 8641628 - 8641772
Alignment:
Q  19 gtatacagaagggttac-tgagttatggaatcaattcaattccttttactgccattacaaaccatggattacattttctctttgaatcaaaaccaaatcc 117  Q
    |||| |||||||||||| ||| |||||  ||||||  ||||||||||| ||||||| ||||| ||| |||   |||||||||| |||||||||||||| |    
T  8641628 gtattcagaagggttacgtgacttatgacatcaatctaattccttttattgccatttcaaactatgaattgagttttctctttcaatcaaaaccaaattc 8641727  T
Q  118 gtgaaagggtattcattaattttgaattggagtggtgaagtaaaa 162  Q
    | |||||||| |||||  |||||||||||||| ||||||||||||    
T  8641728 gagaaagggtgttcatagattttgaattggaggggtgaagtaaaa 8641772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 8641811 - 8641885
Alignment:
Q  349 aacaaggatagtgtgcaaaaatatacttgtgttctcactttgtc-tctaacacatctaaacctttaatttaaatc 422  Q
    |||||||||||||| |  || |||||||||||||||| ||| |  ||||||||||||||||||||||||||||||    
T  8641811 aacaaggatagtgtcctgaagtatacttgtgttctcatttttttgtctaacacatctaaacctttaatttaaatc 8641885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 45500343 - 45500450
Alignment:
Q  55 aattccttttactgccattacaaaccatggatt-acattttctctttgaatcaaaaccaaatccgtgaaagggtattcattaattttgaattggagtggt 153  Q
    |||||||| || ||||||| || || ||||||| |  |||||| ||||||||||||||||||  | |||| ||| |||||  ||| ||||||||||||||    
T  45500343 aattccttctattgccatttcatactatggattgagtttttctttttgaatcaaaaccaaatatgagaaaaggtgttcatagattatgaattggagtggt 45500442  T
Q  154 gaagtaaa 161  Q
    ||||||||    
T  45500443 gaagtaaa 45500450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 51198892 - 51198957
Alignment:
Q  68 gccattacaaaccatggattacattttctctttgaatcaaaaccaaatccgtgaaagggtattcat 133  Q
    ||||||||||||||  |||  |||||||||||||||||||||||||||  | |||||||| |||||    
T  51198892 gccattacaaaccacagatctcattttctctttgaatcaaaaccaaatttgagaaagggtgttcat 51198957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 45500661 - 45500701
Alignment:
Q  391 tctctaacacatctaaacctttaatttaaatctgatgatgt 431  Q
    |||||||||||| ||||| ||||||||||||| ||||||||    
T  45500661 tctctaacacatttaaacttttaatttaaatcggatgatgt 45500701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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