View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_low_7 (Length: 421)
Name: NF5587_low_7
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 102 - 403
Target Start/End: Complemental strand, 3894599 - 3894298
Alignment:
| Q |
102 |
ttaatctataaaattgtcaatgagaatataatagctaatcagtacaattttctcgcaatttaattgtaccaatgcaactatgtgagtaatctaaaatcat |
201 |
Q |
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| T |
3894599 |
ttaatgtataaaattgtcaatgagaatataatagctaatcagtacaattttctcgcaatttaattgtaccaatgcaactatgtgagtaatctaaaatcat |
3894500 |
T |
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| Q |
202 |
agttgcaacataacaattttaaattgctattactgccattcaattgttgcagttatactgtgggtgaccaatgtgattgtgcactgaaataaatgatgaa |
301 |
Q |
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| T |
3894499 |
agttgcaacataacaattttaaattgctattactgccattcaattgttgcagttatactgtgggtgaccaatgtgattgtgcactgaaataaatgatgaa |
3894400 |
T |
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| Q |
302 |
gttaacttacgtctgattggttggaagcagaagcaacgaagactctggagggtttaggaagggggagtgaaggtacgctagggaatgcctttgagaaccg |
401 |
Q |
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| T |
3894399 |
gttaacttacgtctgattggttggaagcagaagcaacgaagactctggagggtttaggaagggggagtgaaggtacgctagggaatgcctttgagaaccg |
3894300 |
T |
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| Q |
402 |
ga |
403 |
Q |
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|| |
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| T |
3894299 |
ga |
3894298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 3894730 - 3894639
Alignment:
| Q |
15 |
atccaaaaaattaatgaatctttgatgccatcatttagttagtttacatttatacaatatctctaaaaataactatttggcaattatttaat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3894730 |
atccaaaaaattaatgaatctttgatgccatcatttagttagtttatatttatacaatatctctaaaaataactatttggcaattatttaat |
3894639 |
T |
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