View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5587_low_8 (Length: 412)
Name: NF5587_low_8
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 105 - 394
Target Start/End: Complemental strand, 8107636 - 8107343
Alignment:
| Q |
105 |
gttttgagtttattttgtagatcagaaacaacctatgtaacgatct---tctttcattgaaaataccattagtagttgtcgtcgtcctctacacatgata |
201 |
Q |
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| T |
8107636 |
gttttgagtttattttgtagatcagaaacacgctatgtgacgatctaattctttcattgaaaataccattcgtaattgtcgtcgtcctctacacatgata |
8107537 |
T |
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| Q |
202 |
cagacaactcttcttcagttcgatcagaaaattgatttatgccaattgtgtaactgtggttacctgtgaaattcattacagagaaagagaaagatattta |
301 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8107536 |
cagacaactcttcttcagttcaatcagaaaattgatttatgccaattgtgtaactgtgattacctgtggaattcattacagagaaagagaaagatattta |
8107437 |
T |
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| Q |
302 |
aaatactactaacaactgataatctgatcgattattgaattgaatctaaaacaaactggatggattaaaaaa-tacctttgttaaactccttaa |
394 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| ||| ||| |||||| ||||||||||||||||||||| |
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| T |
8107436 |
aaatactactaacaatcgataatctcatcgattattgaattgaaacttaaacaaactagatagataaaaaaattacctttgttaaactccttaa |
8107343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 103 - 394
Target Start/End: Complemental strand, 8112286 - 8111988
Alignment:
| Q |
103 |
ccgttttgagtttattttgtagatcagaaacaacctatgtaacgatct---tctttcattgaaaataccattagtagttgtcgtcgtc---ctctacaca |
196 |
Q |
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|||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
8112286 |
ccgttttgagtttattttatagatcagaaacacgctatgtgacgatctaattctttcattgaaaataccattcgtagttgtcgtcgtcgtcctctacaca |
8112187 |
T |
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| Q |
197 |
tgatacagacaactcttcttcagttcgatcagaaaattgatttatgccaattgtgtaactgtggttacctgtgaaattcattacagagaaagagaaagat |
296 |
Q |
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| T |
8112186 |
tgatacagacaactcttcttcagttcgatcagaaaattgatttatgccaattgtgtaactgtgattacctgtggaattcattacagagaaagagaaagat |
8112087 |
T |
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| Q |
297 |
atttaaaatactactaacaactgataatctgatcgattattgaattgaatctaaaacaaactggatggattaaaaaa-tacctttgttaaactccttaa |
394 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| ||| ||| |||||| ||||||||||||||||||||| |
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| T |
8112086 |
atttaaaatactactaacaatcgataatctcatcgattattgaattgaaacttaaacaaactagatagataaaaaaattacctttgttaaactccttaa |
8111988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 105 - 386
Target Start/End: Complemental strand, 8093973 - 8093698
Alignment:
| Q |
105 |
gttttgagtttattttgtagatcagaaacaacctatgtaacgatcttctttcattgaaaataccattagtagttgtcgtcgtcctctac---acatgata |
201 |
Q |
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||||||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||| || | || ||| |||||||||| |||||||| |
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| T |
8093973 |
gttttgagtttattttgtagatcaggaacatgctatgcgacgatcttatttcattgaaaata---ttttttgtcgtcttcgtcctctatgaaacatgata |
8093877 |
T |
|
| Q |
202 |
cagacaactcttcttcagttcgatcagaaaattgatttatgccaattgtgtaactgtggttacctgtgaaattcattacagagaaagagaaagatattta |
301 |
Q |
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|||| ||||||||| |||| ||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||| |||||| ||||||| ||| |
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| T |
8093876 |
cagatgactcttctttagttaaatcagaaaattaatttatgccaattatgtaactgtgattacctgcgaaattcattacaatgaaagataaagatactta |
8093777 |
T |
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| Q |
302 |
aaatactactaacaactgataatctgatcgattattgaattgaatctaaaacaaactggatggattaaaaaatacctttgttaaa |
386 |
Q |
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||||||||| ||||| | |||| || ||||||||||||||| || | |||| |||||||| ||||||||||||||||||| |
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| T |
8093776 |
aaatactacatacaac---tcatctcattgattattgaattgaaactga---aaaccggatggataaaaaaatacctttgttaaa |
8093698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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