View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5587_low_9 (Length: 410)
Name: NF5587_low_9
Description: NF5587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5587_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 3268679 - 3268298
Alignment:
| Q |
11 |
cacagaggatccatatagcactttgagttcatgggtttctggtggattcccatgtcaaggttacacaggtgtcttctgtaacatagaaggttttgtagaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3268679 |
cacagaggatccatatagcactttgagttcatgggtttctggtggagacccatgtcaaggttacacaggtgtcttctgtaacatagaaggttttgtagaa |
3268580 |
T |
|
| Q |
111 |
agaattgtgctttggaacactagcttggtgggtgtgttgtcaccagcactctcagggttgaagaggttgaggatattgacattgtttgggaatcgatttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3268579 |
agaattgtgctttggaacactagcttggtgggtgtgttgtcaccagcactctcagggttgaagaggttgaggatattgacattgtttgggaatcgatttt |
3268480 |
T |
|
| Q |
211 |
cgggtaatattccagatgattatgctgatcttcactcattgtggaagattaatttcagctccaatgcgttatccggttcgatcccagatttcattggtga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3268479 |
cgggtaatattccagatgattatgctgatcttcactcattgtggaagattaatttcagctccaatgcgttatccggttcgatcccagatttcatgggtga |
3268380 |
T |
|
| Q |
311 |
tttgcctaatattcgttttctagatttatcaaagaatggtttcaatggggagataccttcagctttgtttaggtactgctat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3268379 |
tttgcctaatattcgttttctagatttatcaaagaatggcttcaatggggagataccttcagctttgtttaggtactgctat |
3268298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University