View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5588-Insertion-1 (Length: 183)

Name: NF5588-Insertion-1
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5588-Insertion-1
NF5588-Insertion-1
[»] chr6 (7 HSPs)
chr6 (7-183)||(29528627-29528803)
chr6 (7-177)||(29526627-29526797)
chr6 (13-163)||(29474974-29475124)
chr6 (7-177)||(28183812-28183982)
chr6 (102-171)||(29524968-29525037)
chr6 (102-171)||(29612757-29612826)
chr6 (7-67)||(29485952-29486012)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 29528803 - 29528627
Alignment:
Q  7 acatactgagtgtagtttcaaacgctgcgtttgctttggtgtcattaagcttgcacaaactgtttaagtttaagtctgagattggtgtgttctcatattt 106  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||    
T  29528803 acatacttagtgtagtttcaaacgcttcgtttgctttggtgtcattaagcttgcacaaactgtttaagttgaagtctgagatgggtatattctcatattt 29528704  T
Q  107 cttaggttgctttacagttcaactgttaaccatcaactggatgctgatttttgttgctataatctacggttatcttc 183  Q
    |||| ||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||| ||| |||||    
T  29528703 cttatgttgctttacagttcaactgttaacaatcaactggatattgatttttgttgccataatctactgttttcttc 29528627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 29526797 - 29526627
Alignment:
Q  7 acatactgagtgtagtttcaaacgctgcgtttgctttggtgtcattaagcttgcacaaactgtttaagtttaagtctgagattggtgtgttctcatattt 106  Q
    |||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||   ||| |||  || ||||||||||| |||||| |||||    
T  29526797 acatactgagtgtagtttcaaacgctgcattttctatggtgtccttaagcttgcacaaactcactaactttgggtttgagattggtgggttctcttattt 29526698  T
Q  107 cttaggttgctttacagttcaactgttaaccatcaactggatgctgatttttgttgctataatctacggtt 177  Q
    |||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||| |||||||||||||    
T  29526697 cttaggttgctttacaattcaactgttgaccatcaactggatattgatttttgttgccataatctacggtt 29526627  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 29475124 - 29474974
Alignment:
Q  13 tgagtgtagtttcaaacgctgcgtttgctttggtgtcattaagcttgcacaaactgtttaagtttaagtctgagattggtgtgttctcatatttcttagg 112  Q
    ||||| |||||||||| ||||| ||||||||||| |||||||| || ||||||||| |||| |||  || |||||||||||| ||||| |||||||||||    
T  29475124 tgagtatagtttcaaatgctgcatttgctttggtttcattaagtttacacaaactgattaactttgggtttgagattggtgtattctcttatttcttagg 29475025  T
Q  113 ttgctttacagttcaactgttaaccatcaactggatgctgatttttgttgc 163  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  29475024 ttgctttacagttcaactgttaaccatcaactggatgtttatttttgttgc 29474974  T

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Target: chr6; HSP #4
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 28183812 - 28183982
Alignment:
Q  7 acatactgagtgtagtttcaaacgctgcgtttgctttggtgtcattaagcttgcacaaactgtttaagtttaagtctgagattggtgtgttctcatattt 106  Q
    |||||||||||||| ||||||| ||||| |||||||| || ||| |||||||||||| |||| ||||||||  |  |||||| ||||||||||| |||||    
T  28183812 acatactgagtgtaatttcaaatgctgcatttgcttttgtatcagtaagcttgcacagactgcttaagtttggggttgagatgggtgtgttctcttattt 28183911  T
Q  107 cttaggttgctttacagttcaactgttaaccatcaactggatgctgatttttgttgctataatctacggtt 177  Q
      |||||||||||||| ||||||||||||||||||||||| || |||  ||| |||| ||||||| |||||    
T  28183912 tgtaggttgctttacaattcaactgttaaccatcaactgggtgttgaacttttttgccataatcttcggtt 28183982  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 29524968 - 29525037
Alignment:
Q  102 tatttcttaggttgctttacagttcaactgttaaccatcaactggatgctgatttttgttgctataatct 171  Q
    |||||| |||||||| |  ||||||||||||  |||||||| |||||||||||||  |||||||||||||    
T  29524968 tatttcctaggttgcctagcagttcaactgtggaccatcaattggatgctgatttcggttgctataatct 29525037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 29612757 - 29612826
Alignment:
Q  102 tatttcttaggttgctttacagttcaactgttaaccatcaactggatgctgatttttgttgctataatct 171  Q
    |||||| |||||||| ||   ||||||||||  |||||||| |||||||||||||| |||||||||||||    
T  29612757 tatttcctaggttgccttgtggttcaactgtggaccatcaattggatgctgattttggttgctataatct 29612826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 29486012 - 29485952
Alignment:
Q  7 acatactgagtgtagtttcaaacgctgcgtttgctttggtgtcattaagcttgcacaaact 67  Q
    ||||||||||||  |||||||| |||  |||| ||||| || |||||||||||||||||||    
T  29486012 acatactgagtgctgtttcaaaggctttgtttcctttgatgacattaagcttgcacaaact 29485952  T

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