View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5588-Insertion-2 (Length: 955)
Name: NF5588-Insertion-2
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 835; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 835; E-Value: 0
Query Start/End: Original strand, 8 - 954
Target Start/End: Complemental strand, 27257745 - 27256799
Alignment:
| Q |
8 |
caaacttcacatcaaatatattccgggaaaaataaggaaagttgtttgtgtttaagtgctccactagaactcttgaaaacaaaggctttccatgtacgaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
27257745 |
caaacttcacatcaaatatattccgggaaaaataaggaaagttgtttgtgtttaagtgttcaactagaactcttgaaaacaaaggctttccatgtacgaa |
27257646 |
T |
|
| Q |
108 |
cacatcaacgacatggattaattctgttgtaggaggatagaaacggtaagaattattatttttatggttgtgaagggaagggaaggcgtccaagaagaag |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
27257645 |
cacatcaacgacatggattaattctgttgtaggaggatagaaacggtaagaattattatttttatggttgtgaagggaagggaaggcgtccgagaagaag |
27257546 |
T |
|
| Q |
208 |
gaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgccatagatctt |
307 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27257545 |
gaacggtaacctccagggaaagtagagataacgttgtgaacgataggatccaacagcaaagaaggccacgttgaggtgcatatgttccgccatagatctt |
27257446 |
T |
|
| Q |
308 |
cgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtaggtatgaatgat |
407 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27257445 |
cgttgctgtggcaaatcatgtgacgaagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtgggtatgaatgat |
27257346 |
T |
|
| Q |
408 |
gtctgtatctaacctactgaagatattcattctcatggtgattgattgggtgaataattgttttgagaaggctagggttttattttatgaacgagctagg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27257345 |
gtctgtatctaacctactgaagatattcattctcatggtgattgattgggtgaataattgttttgagaaggctagggttttattttatgaacgagctagg |
27257246 |
T |
|
| Q |
508 |
gctttatgtttgtacagcggtggaaactcatgttttggtttagggttaatgaagggattaggggtattggtatttatagttgtggatcgggtttgaaaag |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27257245 |
gctttatgtttgtacagcggtggaaactcatgttttggtttagggttaatgaa-ggattaggggtattggtatttatagttgtggatcgggtttgaaaag |
27257147 |
T |
|
| Q |
608 |
aaaattcatttgatccaaagaaacaattacacatgatcagtaggtttagatgactaattttaaaaatatttgatccaaataannnnnnnggtacaagatc |
707 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27257146 |
aaaattcatttgagccaaagaaacaattacacatgatcagtaggtttagatgactaattttaaaaatatttgatccaaataatttttttggtacaagatc |
27257047 |
T |
|
| Q |
708 |
tcaaaattaatacacaagataaacttctttttctatttgtannnnnnnncagtctagagacaataatacacaagataaacttctctttctattttggata |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27257046 |
tcaaaattaatacacaagataaacttctttttctatttgtattttttttcagtctagagacaataatacacaagataaacttctctttctattttggata |
27256947 |
T |
|
| Q |
808 |
aacttctcaaagaagttattatgcaaaatgaaatatcaaaagaatctttcaaaaagtgaaggaaggaatgtatgaatataatcaatcgaatgaatatctt |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27256946 |
aacttctcaaagaagttattatgcaaaatgaaatatcaaaagaatctttcaaaaagtgaaggaaggaatgtatgaatataatcaatcgaatgaacatctt |
27256847 |
T |
|
| Q |
908 |
cctcggaatgcagcttg-aaatgcgtgctcctgccatatgtctctgct |
954 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| ||||||||||| |
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|
| T |
27256846 |
cctcggaatgcagcttgaaaatgcgtgctcttgccacatgtctctgct |
27256799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 181 - 456
Target Start/End: Complemental strand, 27240970 - 27240695
Alignment:
| Q |
181 |
agggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttg |
280 |
Q |
| |
|
||||||||||| ||||| |||| |||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||| |
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|
| T |
27240970 |
agggaagggaatgcgtcggagaaaaaggaacggtaaccaccagggaaagtggagatgacgttgtgaacaataggatccttcagtaaagaaggccactttg |
27240871 |
T |
|
| Q |
281 |
aggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgag |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |
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| T |
27240870 |
aggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacatacagagaataagacgattaaggttgtgccgtcgag |
27240771 |
T |
|
| Q |
381 |
acggggaaggatgtaggtatgaatgatgtctgtatctaacctactgaagatattcattctcatggtgattgattgg |
456 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
27240770 |
gcggggaaggatgtgggtatgcatgatgtctggatctaacctactgaatatactcatactcatggtgattgattgg |
27240695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 200 - 451
Target Start/End: Complemental strand, 27246480 - 27246232
Alignment:
| Q |
200 |
agaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgcca |
299 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||| | | || |||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
27246480 |
agaagaaggaatggtaaccaccagggaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaggtgcatatgttccgcca |
27246381 |
T |
|
| Q |
300 |
tagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtaggta |
399 |
Q |
| |
|
|| |||| |||| || ||| |||||||| |||||||||||| | || ||||| ||| ||||||||||||| || ||||| ||||| ||||||| || | |
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|
| T |
27246380 |
taaatct---ttgtcgttgcagatcatgtggcggagttctgaagatacggaggagaaggcggttaaggttgttccatcgaggcggggcaggatgtgggca |
27246284 |
T |
|
| Q |
400 |
tgaatgatgtctgtatctaacctactgaagatattcattctcatggtgattg |
451 |
Q |
| |
|
|| || |||| ||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
27246283 |
ccgataatatctggatccaacgtactgaagatattcatgctcatggtgattg |
27246232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 200 - 447
Target Start/End: Complemental strand, 27253260 - 27253016
Alignment:
| Q |
200 |
agaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccactttgaggtgcatatgttccgcca |
299 |
Q |
| |
|
||||||||||| ||||||| || || ||||||||||| ||||||| | | || |||||||| |||||||||||||| |||| ||||||||||||||||| |
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|
| T |
27253260 |
agaagaaggaacggtaaccaccgggaaaagtggagatgacgttgttagctatgggatccaatagcaaagaaggccatgttgaagtgcatatgttccgcca |
27253161 |
T |
|
| Q |
300 |
tagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgtcgagacggggaaggatgtaggta |
399 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||||||||| | ||| ||||||| | ||||||||||||||| ||||| ||||| ||||||| || | |
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|
| T |
27253160 |
tagatcttcgttgtt---gcagatcatgtggcggagttctgaagatacacaggataatatggttaaggttgtgccatcgaggcggggcaggatgtgggca |
27253064 |
T |
|
| Q |
400 |
tgaatgatgtctgtatctaacctactgaagatattcattctcatggtg |
447 |
Q |
| |
|
|||| || |||| ||| ||| || ||||||| ||| ||||||||| |
|
|
| T |
27253063 |
cgaataatatctggatccaacgaacagaagatacccatgctcatggtg |
27253016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 799 - 901
Target Start/End: Complemental strand, 27258343 - 27258241
Alignment:
| Q |
799 |
ttttggataaacttctcaaagaagttattatgcaaaatgaaatatcaaaagaatctttcaaaaagtgaaggaaggaatgtatgaatataatcaatcgaat |
898 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
27258343 |
ttttggataaacttcttaaagaagttattatgcaaaatgaaatatcaaaagaatttttcaaaaagcgatggaaggaatgtatgaatataatcaatcgaat |
27258244 |
T |
|
| Q |
899 |
gaa |
901 |
Q |
| |
|
||| |
|
|
| T |
27258243 |
gaa |
27258241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 806 - 851
Target Start/End: Complemental strand, 27235120 - 27235075
Alignment:
| Q |
806 |
taaacttctcaaagaagttattatgcaaaatgaaatatcaaaagaa |
851 |
Q |
| |
|
||||||||||| ||||||| || ||||||| ||||||||||||||| |
|
|
| T |
27235120 |
taaacttctcagagaagttcttttgcaaaaagaaatatcaaaagaa |
27235075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 177 - 431
Target Start/End: Original strand, 7501997 - 7502250
Alignment:
| Q |
177 |
gtgaagggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccac |
276 |
Q |
| |
|
||||||||||||||| || || ||||||| ||| |||||| || |||||||||||||| || | || |||||| ||||||| || ||||||||| |
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|
| T |
7501997 |
gtgaagggaagggaacgcatcggagaagaatgaactgtaaccaccggggaaagtggagatgacatcgttaacgattggatccataagg---gaaggccac |
7502093 |
T |
|
| Q |
277 |
tttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaa--ggttgtgcc |
374 |
Q |
| |
|
||||||||||| || ||||||||||||| | |||||||| ||| |||| ||| |||||||||| | |||| | |||||| ||||||| |||||| |
|
|
| T |
7502094 |
tttgaggtgcaaatattccgccatagattgttgttgttgttgcagatcaggtggcggagttctggagacacggtcgataaggcggttaaatcagtgtgcc |
7502193 |
T |
|
| Q |
375 |
gtcgagacggggaaggatgtaggtatgaatgatgtctgtatctaacctactgaagat |
431 |
Q |
| |
|
|||||| || |||||||||| | | | ||||||||||| |||||||||||||||||| |
|
|
| T |
7502194 |
gtcgaggcgtggaaggatgtggctgttaatgatgtctgaatctaacctactgaagat |
7502250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 437
Target Start/End: Original strand, 7500564 - 7500818
Alignment:
| Q |
177 |
gtgaagggaagggaaggcgtccaagaagaaggaatggtaacctccagggaaagtggagataacgttgtgaacgataggatccaacagcaaagaaggccac |
276 |
Q |
| |
|
||||| |||||| || ||||| ||||||||||| ||||||| ||||||||||||| ||||| || | |||| | |||| ||| | |||||||| |
|
|
| T |
7500564 |
gtgaatggaaggaaacgcgtcggagaagaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggat---gcagaaggcaaggccac |
7500660 |
T |
|
| Q |
277 |
tttgaggtgcatatgttccgccatagatcttcgttgttgtggcaaatcatgtgacggagttctgaacacacagaggataagacggttaaggttgtgccgt |
376 |
Q |
| |
|
| |||||||| ||||||||||||| || |||||||| ||| |||| ||| || || || ||||| ||| |||| || | |||||| || || | |
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|
| T |
7500661 |
atggaggtgcaaatgttccgccataattcctcgttgtt---gcagatcaagtggcgaaggtcggaacatacacaggacaatgccattaaggctgccccat |
7500757 |
T |
|
| Q |
377 |
cgagacggggaaggatgtaggtatgaatgatgtctgtatctaacctactgaagatattcat |
437 |
Q |
| |
|
|||| || |||||||| ||||| || |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
7500758 |
cgaggcgtggaaggatataggtctggatgatgtctggatctaacctactgaaattattcat |
7500818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 903 - 944
Target Start/End: Complemental strand, 33310771 - 33310729
Alignment:
| Q |
903 |
atcttcctcggaatgcagcttg-aaatgcgtgctcctgccata |
944 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
33310771 |
atcttcctcggaatgcagcttgaaaatgcgtgctcctaccata |
33310729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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