View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588-Insertion-5 (Length: 705)
Name: NF5588-Insertion-5
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 289 - 703
Target Start/End: Complemental strand, 35592187 - 35591774
Alignment:
| Q |
289 |
cggattgaaatattggatgaatatgtctgttgatcaattggggagagatcttttgtacacgatcgtctctccgcctgttaaacttagatctaggtagtga |
388 |
Q |
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| T |
35592187 |
cggattgaaatattggatgaatatgtctgttgatcaattggggagagatcttttgtacacgatcgtctctccgccttttaaacttagatctaggtagtga |
35592088 |
T |
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| Q |
389 |
tttatagattagcagatgatgataaagtttgatgtgaataaatagcatcaaattgtcttgaaaacatttattggatataatgagagtgcttagggacata |
488 |
Q |
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| T |
35592087 |
tttatagattagcagatgatgataaagtttgatgtgaataaatagcatcaaattgtcttgaaaacatttattggatttaatgagagtgcttagggacata |
35591988 |
T |
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| Q |
489 |
tgagaaacatgtagggtatgtttggcaacaatgcagcgtaggtttgagtaaaatatctagtcaaaaatagaaggtaggaacgctggggttccttttgctt |
588 |
Q |
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| T |
35591987 |
tgagaaacatgcagggtatgtttgacaacaatgcagcataggtttgagtaaaatatctagtcaaaaatagaaggtaggaacgctggggtcccttttgctt |
35591888 |
T |
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| Q |
589 |
caaatagactatcacgagtgcttctaagggttttccaaacgtatgcatatcgtgttttaagctagttgtctgtgttggcaaatccaaacgtatgcgtatc |
688 |
Q |
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| T |
35591887 |
caaatagactatcac-agtgcttctaagggttttccaaacgtatgcatatcgtgttttaaactagttgtctgtgttggcaaatccaaacgtatgcgtatc |
35591789 |
T |
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| Q |
689 |
gcgttttaagctaat |
703 |
Q |
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| T |
35591788 |
gcgttttaagctaat |
35591774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 80 - 294
Target Start/End: Complemental strand, 35592441 - 35592226
Alignment:
| Q |
80 |
aatcaggtattaggaagttgaaagaagtgaattgaattttgtttgtttcaaatttcacttgaaaattgaaatagtttacttgagctgaaacaaagnnnnn |
179 |
Q |
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| T |
35592441 |
aatcaggtattaggaagttgaaagacgtgaattgaactttgtttgtttcaaatttcacttgaaaattgaaatagtttacttgagctgaaacaaagttttt |
35592342 |
T |
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| Q |
180 |
nngatggttgtgatttagtaaaccagatgctgatttagtg-actcttgcgtggtgacgagcttttgagtgttagttttatgctctgttggattgcagttt |
278 |
Q |
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| T |
35592341 |
ttgagggttgtgatttagtaaaccagatgctgatttagtgaactcttgcgtggtgacgagcttttgagtgttagttttatcctctgttggattgcagttt |
35592242 |
T |
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| Q |
279 |
ggattttaatcggatt |
294 |
Q |
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| T |
35592241 |
ggattttaatcggatt |
35592226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 668
Target Start/End: Complemental strand, 35591806 - 35591760
Alignment:
| Q |
622 |
tccaaacgtatgcatatcgtgttttaagctagttgtctgtgttggca |
668 |
Q |
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| T |
35591806 |
tccaaacgtatgcgtatcgcgttttaagctaatagtctgtgttggca |
35591760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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