View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588-Insertion-7 (Length: 440)
Name: NF5588-Insertion-7
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Complemental strand, 37842969 - 37842536
Alignment:
| Q |
8 |
cctgcaacactagtttctgaaggtcaggtggtttatcttcacctgatacgttgaattcgtaagcatatctggttccaatcaatccagctcccctaccaat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842969 |
cctgcaacactagtttctgaaggtcaggtggtttatcttcacctgatacgttgaattcgtaagcatatctggttccaatcaatccagctcccctaccaat |
37842870 |
T |
|
| Q |
108 |
ataccattgctttagatcttccgtatctgattcctttctaaggaaacgccttctaattattattaccagcacaacagaaatcaatatagaggatccaatt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842869 |
ataccattgctttagatcttccgtatctgattcctttctaaggaaacgcctttgaattattattaccagcacaacagaaatcaatatagaggatccaatt |
37842770 |
T |
|
| Q |
208 |
tcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggag--acatggatttacataactagttttaatgcaacttaaacaactga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842769 |
tcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagacacatggatttacataactagttttaatgcaacttaaacaactga |
37842670 |
T |
|
| Q |
306 |
cacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37842669 |
cacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatatt |
37842570 |
T |
|
| Q |
406 |
gacctcaattaatgaaacaagacttccaagtgcg |
439 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
37842569 |
gacctcaattaatgaaacaagacttccaagtgcg |
37842536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 162 - 427
Target Start/End: Complemental strand, 28089684 - 28089418
Alignment:
| Q |
162 |
aattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggag |
261 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||| |||| ||||||||||||||| || |
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| T |
28089684 |
aattattatcaccagcacatcagaaatcaatattgaggatccaagttctatcatcacaatttgaacattaccgataactttatgatcggttgatttgtag |
28089585 |
T |
|
| Q |
262 |
aca--tggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttca |
359 |
Q |
| |
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||| |||||||||||||||||||||||||||| || ||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
28089584 |
acacatggatttacataactagttttaatgcaa-ttcaacaactaaaacatatgagaggattgcccatgaatgatgatggtgaggaattcaataaactca |
28089486 |
T |
|
| Q |
360 |
ttagacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaattaatgaaacaaga |
427 |
Q |
| |
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| T |
28089485 |
ttagagctaatggtacaaaaccattgaagagattgtaagaaatattgacctcaattaatgaaacaaga |
28089418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 165 - 435
Target Start/End: Complemental strand, 37837193 - 37836921
Alignment:
| Q |
165 |
tattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagaca |
264 |
Q |
| |
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|||||| |||| |||| ||||||||||||| |||||||||| | | ||||| ||||||||||||| |||||||||||| ||||| ||||||||| ||||| |
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| T |
37837193 |
tattatcaccatcacagcagaaatcaatattgaggatccaagtactatcattacaatttgaacataactgatacctttatgatcagttgatttgtagaca |
37837094 |
T |
|
| Q |
265 |
--tggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcatta |
362 |
Q |
| |
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||||||||||| ||||||| |||||||| | |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37837093 |
catggatttacattactagttataatgcaattcaaacaacttacacataggaaaggattacccatgaatgatgatggtgaggaattcaataacctcatta |
37836994 |
T |
|
| Q |
363 |
gacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaattaatgaaacaagacttccaag |
435 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
37836993 |
gacctgttggtacagatccattgaagagattgaaagaaatattgacctcaattaatgaaacaagacctccaag |
37836921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 182 - 435
Target Start/End: Complemental strand, 37831472 - 37831217
Alignment:
| Q |
182 |
cagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggagaca--tggatttacataact |
279 |
Q |
| |
|
||||||| ||||| |||||||||| ||| |||| ||||||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||||||||||| |
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| T |
37831472 |
cagaaataaatattgaggatccaagttctatcaacacaatttgaacattaccgatacctttgtgatcagttgacttgtagacacatggatttacataact |
37831373 |
T |
|
| Q |
280 |
agttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaa |
379 |
Q |
| |
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||||| ||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37831372 |
agtttcaatgcaactcaaacaactaacacataggagaggactacccatgaatgatgatggtgaggaattcagtaacttcattagacctgttggtacagaa |
37831273 |
T |
|
| Q |
380 |
ccattgaagagattgtgagaaatattgacctcaattaatgaaacaagacttccaag |
435 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||| |||| |||||||||||| |||| |
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| T |
37831272 |
ccattgaagagattgtaagaaacattgatatcagttaacgaaacaagactttcaag |
37831217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 307 - 428
Target Start/End: Complemental strand, 37850428 - 37850307
Alignment:
| Q |
307 |
acatatgagaggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatattg |
406 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||| |
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| T |
37850428 |
acataggagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattg |
37850329 |
T |
|
| Q |
407 |
acctcaattaatgaaacaagac |
428 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
37850328 |
acctcaattaatgaaacaagac |
37850307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 162 - 428
Target Start/End: Complemental strand, 36865943 - 36865675
Alignment:
| Q |
162 |
aattattattaccagcacaacagaaatcaatatagaggatccaatttcaatcatcacaatttgaacattactgatacctttgtgatcggttgatttggag |
261 |
Q |
| |
|
||||||||| ||| |||| |||||| ||||| |||| ||||| ||| ||||||||||||||||||||| |||||||||||||||| |||| |||| || |
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|
| T |
36865943 |
aattattatcaccgccacaccagaaacaaatattgagggtccaagttctatcatcacaatttgaacattaatgatacctttgtgatcagttggtttgtag |
36865844 |
T |
|
| Q |
262 |
a--catggatttacataactagttttaatgcaacttaaacaactgacacatatgagaggattacccatgaatgatgatggtgaggaattcaataacttca |
359 |
Q |
| |
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| |||||||||| | |||||||||||| |||| | ||||| || ||||||| |||||||||||||||||| ||||| |||||||||||||||||| | | |
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|
| T |
36865843 |
atacatggatttataaaactagttttaaagcaattcaaacatctaacacataggagaggattacccatgaacgatgacggtgaggaattcaataacctaa |
36865744 |
T |
|
| Q |
360 |
ttagacctgttggtacagaaccattgaagagattgtgagaaatattgacctcaattaatgaaacaagac |
428 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
36865743 |
ttagacgtgttggtacagaaccattgaaaagattgtaataaatattgacctcaattaatgaaacaagac |
36865675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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