View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5588_high_17 (Length: 244)

Name: NF5588_high_17
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5588_high_17
NF5588_high_17
[»] chr7 (15 HSPs)
chr7 (47-244)||(16440573-16440770)
chr7 (47-244)||(16455475-16455673)
chr7 (18-203)||(16161653-16161838)
chr7 (52-176)||(17242238-17242362)
chr7 (78-111)||(5802941-5802974)
chr7 (78-114)||(23764216-23764252)
chr7 (64-114)||(7368335-7368385)
chr7 (71-121)||(15853378-15853428)
chr7 (71-121)||(16036024-16036074)
chr7 (71-121)||(16050748-16050798)
chr7 (130-159)||(23831981-23832010)
chr7 (123-159)||(10922465-10922501)
chr7 (123-159)||(16499593-16499629)
chr7 (123-159)||(16508888-16508924)
chr7 (123-159)||(16524004-16524040)
[»] chr4 (16 HSPs)
chr4 (47-244)||(17085958-17086155)
chr4 (43-244)||(34194598-34194799)
chr4 (46-225)||(21964231-21964410)
chr4 (46-225)||(21979474-21979653)
chr4 (71-121)||(6558172-6558222)
chr4 (47-159)||(15082515-15082627)
chr4 (78-121)||(1894993-1895036)
chr4 (78-121)||(1909794-1909837)
chr4 (130-172)||(1642168-1642210)
chr4 (72-121)||(12784820-12784869)
chr4 (78-119)||(15652308-15652349)
chr4 (130-159)||(26139961-26139990)
chr4 (130-159)||(33676257-33676286)
chr4 (130-159)||(34270975-34271004)
chr4 (130-159)||(35057920-35057949)
chr4 (123-159)||(19640544-19640580)
[»] scaffold0003 (1 HSPs)
scaffold0003 (47-244)||(18684-18881)
[»] chr5 (37 HSPs)
chr5 (55-244)||(22897897-22898086)
chr5 (43-244)||(26772800-26773001)
chr5 (43-244)||(27283037-27283238)
chr5 (46-225)||(33510889-33511068)
chr5 (46-225)||(33526152-33526331)
chr5 (47-202)||(30144274-30144428)
chr5 (47-202)||(30178324-30178478)
chr5 (130-176)||(28899243-28899289)
chr5 (130-176)||(28935638-28935684)
chr5 (71-121)||(34494476-34494526)
chr5 (130-175)||(23723641-23723686)
chr5 (18-56)||(18118871-18118909)
chr5 (18-56)||(18129251-18129289)
chr5 (130-172)||(30956018-30956060)
chr5 (82-159)||(11544885-11544962)
chr5 (82-159)||(11558944-11559021)
chr5 (130-163)||(30929143-30929176)
chr5 (71-117)||(22269842-22269888)
chr5 (130-159)||(9312056-9312085)
chr5 (130-159)||(9327315-9327344)
chr5 (130-159)||(12126758-12126787)
chr5 (130-159)||(12142011-12142040)
chr5 (130-159)||(13315043-13315072)
chr5 (130-159)||(13330370-13330399)
chr5 (130-159)||(22444716-22444745)
chr5 (130-159)||(24946628-24946657)
chr5 (130-159)||(26474996-26475025)
chr5 (130-159)||(26490044-26490073)
chr5 (130-159)||(31426007-31426036)
chr5 (130-159)||(31441345-31441374)
chr5 (130-159)||(37661753-37661782)
chr5 (130-159)||(37677036-37677065)
chr5 (130-159)||(37742388-37742417)
chr5 (130-159)||(37776470-37776499)
chr5 (130-159)||(41300629-41300658)
chr5 (18-46)||(40463942-40463970)
chr5 (18-46)||(40478833-40478861)
[»] scaffold0252 (1 HSPs)
scaffold0252 (43-203)||(1085-1245)
[»] scaffold0027 (1 HSPs)
scaffold0027 (46-225)||(129917-130096)
[»] chr6 (28 HSPs)
chr6 (46-225)||(7987093-7987272)
chr6 (46-225)||(30563526-30563705)
chr6 (46-225)||(27192186-27192365)
chr6 (46-225)||(27204039-27204218)
chr6 (46-225)||(27245013-27245192)
chr6 (46-225)||(27256876-27257055)
chr6 (46-194)||(30548255-30548403)
chr6 (47-202)||(27002228-27002382)
chr6 (47-202)||(27017734-27017888)
chr6 (78-123)||(20133585-20133630)
chr6 (78-123)||(22199239-22199284)
chr6 (130-172)||(22940514-22940556)
chr6 (130-172)||(23862958-23863000)
chr6 (130-163)||(30721773-30721806)
chr6 (123-159)||(18939635-18939671)
chr6 (130-172)||(22924802-22924844)
chr6 (71-121)||(25178762-25178812)
chr6 (133-175)||(28198037-28198079)
chr6 (130-159)||(4729574-4729603)
chr6 (130-159)||(16997533-16997562)
chr6 (130-159)||(27212644-27212673)
chr6 (130-159)||(27236555-27236584)
chr6 (130-159)||(27307883-27307912)
chr6 (130-159)||(32782083-32782112)
chr6 (123-159)||(12616560-12616596)
chr6 (123-159)||(16346175-16346211)
chr6 (18-46)||(27039071-27039099)
chr6 (18-46)||(27067410-27067438)
[»] chr3 (25 HSPs)
chr3 (46-225)||(17975003-17975182)
chr3 (46-225)||(17990551-17990730)
chr3 (46-225)||(18219665-18219844)
chr3 (46-225)||(18234973-18235152)
chr3 (47-202)||(28333780-28333934)
chr3 (47-202)||(28348882-28349036)
chr3 (126-175)||(28166920-28166969)
chr3 (71-121)||(14142558-14142608)
chr3 (71-121)||(18525048-18525098)
chr3 (130-163)||(4653281-4653314)
chr3 (72-121)||(23012594-23012643)
chr3 (71-119)||(19448511-19448559)
chr3 (80-114)||(15365064-15365098)
chr3 (130-159)||(1733997-1734026)
chr3 (130-159)||(15883279-15883308)
chr3 (130-159)||(15898458-15898487)
chr3 (130-159)||(17904036-17904065)
chr3 (130-159)||(17966888-17966917)
chr3 (130-159)||(17997368-17997397)
chr3 (130-159)||(19703896-19703925)
chr3 (130-159)||(26685069-26685098)
chr3 (130-159)||(47196840-47196869)
chr3 (52-92)||(17786865-17786905)
chr3 (52-92)||(19088386-19088426)
chr3 (52-92)||(19364876-19364916)
[»] chr2 (17 HSPs)
chr2 (46-225)||(16819643-16819822)
chr2 (46-225)||(16834884-16835063)
chr2 (46-225)||(16874865-16875044)
chr2 (46-225)||(32059513-32059692)
chr2 (46-225)||(32044317-32044496)
chr2 (52-202)||(35763431-35763580)
chr2 (130-176)||(10116403-10116449)
chr2 (71-121)||(21693878-21693928)
chr2 (71-121)||(21708659-21708709)
chr2 (78-111)||(39884674-39884707)
chr2 (78-111)||(39900250-39900283)
chr2 (130-159)||(2731148-2731177)
chr2 (130-159)||(13819449-13819478)
chr2 (64-121)||(29439332-29439389)
chr2 (130-159)||(40195038-40195067)
chr2 (123-159)||(28876706-28876742)
chr2 (123-159)||(28891916-28891952)
[»] chr8 (11 HSPs)
chr8 (46-225)||(4486592-4486771)
chr8 (130-172)||(17896831-17896873)
chr8 (130-159)||(554628-554657)
chr8 (130-159)||(6053467-6053496)
chr8 (130-159)||(14026245-14026274)
chr8 (130-159)||(19669173-19669202)
chr8 (78-111)||(19697664-19697697)
chr8 (130-159)||(21338264-21338293)
chr8 (130-159)||(21378225-21378254)
chr8 (130-159)||(24462254-24462283)
chr8 (130-159)||(44570810-44570839)
[»] scaffold1536 (1 HSPs)
scaffold1536 (46-225)||(1017-1196)
[»] chr1 (14 HSPs)
chr1 (43-145)||(47767122-47767224)
chr1 (130-176)||(16653689-16653735)
chr1 (71-117)||(16404800-16404846)
chr1 (71-121)||(20344332-20344382)
chr1 (130-160)||(36088884-36088914)
chr1 (130-159)||(10938069-10938098)
chr1 (130-159)||(10957260-10957289)
chr1 (130-159)||(10972483-10972512)
chr1 (130-159)||(28579543-28579572)
chr1 (130-159)||(28594969-28594998)
chr1 (130-159)||(47353413-47353442)
chr1 (123-159)||(18292631-18292667)
chr1 (99-159)||(20455765-20455825)
chr1 (123-159)||(21480608-21480644)
[»] scaffold0021 (2 HSPs)
scaffold0021 (47-121)||(179180-179254)
scaffold0021 (71-121)||(98267-98317)
[»] scaffold0750 (1 HSPs)
scaffold0750 (71-121)||(152-202)
[»] scaffold0347 (1 HSPs)
scaffold0347 (71-121)||(17245-17295)
[»] scaffold0225 (1 HSPs)
scaffold0225 (130-163)||(273-306)
[»] scaffold0393 (1 HSPs)
scaffold0393 (47-159)||(6100-6212)
[»] scaffold0184 (1 HSPs)
scaffold0184 (73-121)||(21881-21929)
[»] scaffold0078 (1 HSPs)
scaffold0078 (73-121)||(50915-50963)
[»] scaffold1665 (1 HSPs)
scaffold1665 (68-111)||(838-881)
[»] scaffold0740 (1 HSPs)
scaffold0740 (71-117)||(945-991)
[»] scaffold0260 (1 HSPs)
scaffold0260 (71-121)||(6655-6705)
[»] scaffold0235 (1 HSPs)
scaffold0235 (64-114)||(209-259)
[»] scaffold0134 (1 HSPs)
scaffold0134 (130-172)||(22401-22443)
[»] scaffold0049 (1 HSPs)
scaffold0049 (130-172)||(37051-37093)
[»] scaffold1648 (1 HSPs)
scaffold1648 (130-159)||(835-864)
[»] scaffold0061 (1 HSPs)
scaffold0061 (130-159)||(32876-32905)
[»] scaffold0017 (1 HSPs)
scaffold0017 (130-159)||(165886-165915)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 47 - 244
Target Start/End: Original strand, 16440573 - 16440770
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16440573 ggatacggatctcacagggacgctcagggatcgttggattgatccaagctcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 16440672  T
Q  147 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaaactcctctactctcgcctc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| ||||||| ||||||||||    
T  16440673 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcacttccaccaaatctttatctctctaagctcctcttctctcgcctc 16440770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 47 - 244
Target Start/End: Original strand, 16455475 - 16455673
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgca-ggggattggaccggtct 145  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16455475 ggatacggatctcacagagacgctcagggttcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaaggggattggaccggtct 16455574  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaaactcctctactctcgcctc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  16455575 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccgatttattcacttgcaccaaatctttctctctctaagctcctcttctctcgcctc 16455673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 16161838 - 16161653
Alignment:
Q  18 taggcccaaacccaaagcccacactcaaaggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaagg 117  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  16161838 taggcccaaacccaaagcccacactcaatggatacggatctcacagggacgctcagggatcgttggattgatccaagaccccaaaccctagatctaaggg 16161739  T
Q  118 ctcacaacgcaggggattggaccggtcttgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttg 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||| ||||||||    
T  16161738 ctcacaacgcagggaattggaccggtcttgaaccggtccggtctaacgctctatataaaaccctagcgcgccggttttttcatttg 16161653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 17242362 - 17242238
Alignment:
Q  52 cggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtcttgaacc 151  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  17242362 cggatctcacaggaactctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacacatgggattggaccggtcttgaacc 17242263  T
Q  152 ggtccggtctagcgctctatataaa 176  Q
    |||||||| |||| |||||||||||    
T  17242262 ggtccggtttagcactctatataaa 17242238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 5802941 - 5802974
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatc 111  Q
    ||||||||||||||||||||||||||||||||||    
T  5802941 cgttggattgatccaagatcccaaaccctagatc 5802974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 23764252 - 23764216
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatctaa 114  Q
    ||||||||||||||||||| |||||||||||||||||    
T  23764252 cgttggattgatccaagatgccaaaccctagatctaa 23764216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 7368385 - 7368335
Alignment:
Q  64 ggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaa 114  Q
    |||||| |||| | |||| |||||||||||||| |||||||||||||||||    
T  7368385 ggacgcacaggaaccgttagattgatccaagatgccaaaccctagatctaa 7368335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 15853428 - 15853378
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| ||||||||||||| | ||  ||||||||||||||||||||||||    
T  15853428 cagggagcgttggattgatctaggaaaccaaaccctagatctaaaggctca 15853378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 16036074 - 16036024
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| | ||||||||||||| ||  ||||||||||||||||||||||||    
T  16036074 cagggagcattggattgatccaggaagccaaaccctagatctaaaggctca 16036024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 16050798 - 16050748
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| | ||||||||||||| ||  ||||||||||||||||||||||||    
T  16050798 cagggagcattggattgatccaggaagccaaaccctagatctaaaggctca 16050748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 23831981 - 23832010
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  23831981 gggattggaccggtcttgaaccggtccggt 23832010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 10922465 - 10922501
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  10922465 aacgaaggggattggaccggtcttggaccggtccggt 10922501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 16499593 - 16499629
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  16499593 aacgaaggggattggaccggtcttggaccggtccggt 16499629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 16508888 - 16508924
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  16508888 aacgaaggggattggaccggtcttggaccggtccggt 16508924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 16524004 - 16524040
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  16524004 aacgaaggggattggaccggtcttggaccggtccggt 16524040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 47 - 244
Target Start/End: Complemental strand, 17086155 - 17085958
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17086155 ggatacggatctcacagagacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattagaccggtctt 17086056  T
Q  147 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaaactcctctactctcgcctc 244  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  17086055 gaaccggtccggtctagcgctctatataaaggcctaatgcgccggtttattcacttgcaccaaatctttctctctctaagctcctcttctctcgcctc 17085958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 34194598 - 34194799
Alignment:
Q  43 caaaggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccgg 142  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  34194598 caaaggatccggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacgcagggggttggaccgg 34194697  T
Q  143 tcttgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaaactcctctactctcgcc 242  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || | |||||||||||||||||||||| ||||||||    
T  34194698 tcttgaaccggtccggtctagcgccctatataaaagcctaatgcgccggttttttcatttgcaacacacctttctctctctaaactcctcttctctcgcc 34194797  T
Q  243 tc 244  Q
    ||    
T  34194798 tc 34194799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 21964410 - 21964231
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21964410 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 21964311  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  21964310 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 21964231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 21979653 - 21979474
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21979653 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 21979554  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  21979553 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 21979474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 6558172 - 6558222
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  6558172 cagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 6558222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 15082515 - 15082627
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    |||| |||||| ||| || | |||||||||||||||||| |||||| ||  | ||| ||||||||||||||| || | |  |||| |||||||| |  ||    
T  15082515 ggatccggatcacacgggaaagctcagggatcgttggatcgatccaggaagcaaaaacctagatctaaaggcgcagatcaaagggaattggaccagaatt 15082614  T
Q  147 gaaccggtccggt 159  Q
    |||||||||||||    
T  15082615 gaaccggtccggt 15082627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 1895036 - 1894993
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||    
T  1895036 cgttggattgatccaggaagccaaaccctagatctaaaggctca 1894993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 1909837 - 1909794
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||    
T  1909837 cgttggattgatccaggaagccaaaccctagatctaaaggctca 1909794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 1642210 - 1642168
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctata 172  Q
    ||||||||||||||||||||||| |||||||||| | ||||||    
T  1642210 gggattggaccggtcttgaaccgatccggtctaggggtctata 1642168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 12784869 - 12784820
Alignment:
Q  72 agggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    ||||| ||||||||||||||| ||  || |||||||||||||||||||||    
T  12784869 agggagcgttggattgatccaggaagcctaaccctagatctaaaggctca 12784820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 15652308 - 15652349
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatctaaaggct 119  Q
    ||||||||||||||| ||  ||||||||||||||||||||||    
T  15652308 cgttggattgatccaggaagccaaaccctagatctaaaggct 15652349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 26139961 - 26139990
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  26139961 gggattggaccggtcttgaaccggtccggt 26139990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 33676286 - 33676257
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  33676286 gggattggaccggtcttgaaccggtccggt 33676257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 34271004 - 34270975
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  34271004 gggattggaccggtcttgaaccggtccggt 34270975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 35057920 - 35057949
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  35057920 gggattggaccggtcttgaaccggtccggt 35057949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 19640544 - 19640580
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  19640544 aacgaaggggattggaccggtcttggaccggtccggt 19640580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 47 - 244
Target Start/End: Original strand, 18684 - 18881
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18684 ggatacggatctcacagagacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattagaccggtctt 18783  T
Q  147 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaaactcctctactctcgcctc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| ||||||| ||||||||||    
T  18784 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcacttacaccaaatctttatctctctaagctcctcttctctcgcctc 18881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 55 - 244
Target Start/End: Complemental strand, 22898086 - 22897897
Alignment:
Q  55 atctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtcttgaaccggt 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22898086 atctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtcttgaactggt 22897987  T
Q  155 ccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaaactcctctactctcgcctc 244  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||    
T  22897986 ccgttctagcgctctatataaaagcctaatgcgccggtttattcacttgcaccaaatctttctctctctaagctcctcttttctcgcctc 22897897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 43 - 244
Target Start/End: Complemental strand, 26773001 - 26772800
Alignment:
Q  43 caaaggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccgg 142  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26773001 caaaggatccggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacgcagggggttggaccgg 26772902  T
Q  143 tcttgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaaactcctctactctcgcc 242  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || | |||||||||||||||||||||| ||||||||    
T  26772901 tcttgaaccggtccggtctagcgccctatataaaagcctaatgcgccggttttttcatttgcaacacacctttctctctctaaactcctcttctctcgcc 26772802  T
Q  243 tc 244  Q
    ||    
T  26772801 tc 26772800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 43 - 244
Target Start/End: Complemental strand, 27283238 - 27283037
Alignment:
Q  43 caaaggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccgg 142  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  27283238 caaaggatccggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacgcagggggttggaccgg 27283139  T
Q  143 tcttgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaaactcctctactctcgcc 242  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || | |||||||||||||||||||||| ||||||||    
T  27283138 tcttgaaccggtccggtctagcgccctatataaaagcctaatgcgccggttttttcatttgcaacacacctttctctctctaaactcctcttctctcgcc 27283039  T
Q  243 tc 244  Q
    ||    
T  27283038 tc 27283037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 33511068 - 33510889
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33511068 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 33510969  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  33510968 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 33510889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 33526331 - 33526152
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33526331 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 33526232  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  33526231 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 33526152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 30144428 - 30144274
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  30144428 ggatccggatctcacaggaatgctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacgcatgggattggaccggtctt 30144329  T
Q  147 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcattt 202  Q
    |||||||||||||||||| |||||||| ||| ||||  |||||||||| |||||||    
T  30144328 gaaccggtccggtctagcactctatat-aaaccctagcgcgccggttttttcattt 30144274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 30178478 - 30178324
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  30178478 ggatccggatctcacaggaatgctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacgcatgggattggaccggtctt 30178379  T
Q  147 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcattt 202  Q
    |||||||||||||||||| |||||||| ||| ||||  |||||||||| |||||||    
T  30178378 gaaccggtccggtctagcactctatat-aaaccctagcgcgccggttttttcattt 30178324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 28899243 - 28899289
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctatataaa 176  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  28899243 gggattggaccggtcttgaaccggtccggtctagtggtctatataaa 28899289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 28935638 - 28935684
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctatataaa 176  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  28935638 gggattggaccggtcttgaaccggtccggtctagtggtctatataaa 28935684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 34494476 - 34494526
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  34494476 cagggagcgttggattgatccaagaaaccaaaccctagatctaaaggctca 34494526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 23723641 - 23723686
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctatataa 175  Q
    |||||||||||||||||||||||||||||||||| | |||||||||    
T  23723641 gggattggaccggtcttgaaccggtccggtctaggggtctatataa 23723686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 18118871 - 18118909
Alignment:
Q  18 taggcccaaacccaaagcccacactcaaaggatacggat 56  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  18118871 taggcccaaacccaaagcccacactcaaaagatacggat 18118909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 18129251 - 18129289
Alignment:
Q  18 taggcccaaacccaaagcccacactcaaaggatacggat 56  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  18129251 taggcccaaacccaaagcccacactcaaaagatacggat 18129289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 30956060 - 30956018
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctata 172  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  30956060 gggattggaccggtcttgaaccggtccggtctaggggtctata 30956018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 11544962 - 11544885
Alignment:
Q  82 ggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||| ||   ||||||||||||| || |||    |||| ||||||||||||||||||||||||||||||||    
T  11544962 ggattgatccaggagatcaaaccctagatccaacggccaggaacgaaggggattggaccggtcttgaaccggtccggt 11544885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 11559021 - 11558944
Alignment:
Q  82 ggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||| ||   ||||||||||||| || |||    |||| ||||||||||||||||||||||||||||||||    
T  11559021 ggattgatccaggagatcaaaccctagatccaacggccaggaacgaaggggattggaccggtcttgaaccggtccggt 11558944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 30929176 - 30929143
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctag 163  Q
    ||||||||||||||||||||||||||||||||||    
T  30929176 gggattggaccggtcttgaaccggtccggtctag 30929143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 22269842 - 22269888
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaagg 117  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  22269842 cagggagcgttggattgatccaggaagccaaaccctagatctaaagg 22269888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 9312085 - 9312056
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  9312085 gggattggaccggtcttgaaccggtccggt 9312056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 9327344 - 9327315
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  9327344 gggattggaccggtcttgaaccggtccggt 9327315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 12126787 - 12126758
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  12126787 gggattggaccggtcttgaaccggtccggt 12126758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 12142040 - 12142011
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  12142040 gggattggaccggtcttgaaccggtccggt 12142011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 13315043 - 13315072
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  13315043 gggattggaccggtcttgaaccggtccggt 13315072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 13330370 - 13330399
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  13330370 gggattggaccggtcttgaaccggtccggt 13330399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 22444745 - 22444716
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  22444745 gggattggaccggtcttgaaccggtccggt 22444716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 24946657 - 24946628
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  24946657 gggattggaccggtcttgaaccggtccggt 24946628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 26475025 - 26474996
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  26475025 gggattggaccggtcttgaaccggtccggt 26474996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 26490073 - 26490044
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  26490073 gggattggaccggtcttgaaccggtccggt 26490044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 31426036 - 31426007
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  31426036 gggattggaccggtcttgaaccggtccggt 31426007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 31441374 - 31441345
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  31441374 gggattggaccggtcttgaaccggtccggt 31441345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 37661753 - 37661782
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  37661753 gggattggaccggtcttgaaccggtccggt 37661782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 37677036 - 37677065
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  37677036 gggattggaccggtcttgaaccggtccggt 37677065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 37742388 - 37742417
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  37742388 gggattggaccggtcttgaaccggtccggt 37742417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 37776470 - 37776499
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  37776470 gggattggaccggtcttgaaccggtccggt 37776499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 41300658 - 41300629
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  41300658 gggattggaccggtcttgaaccggtccggt 41300629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 40463942 - 40463970
Alignment:
Q  18 taggcccaaacccaaagcccacactcaaa 46  Q
    |||||||||||||||||||||||||||||    
T  40463942 taggcccaaacccaaagcccacactcaaa 40463970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 40478833 - 40478861
Alignment:
Q  18 taggcccaaacccaaagcccacactcaaa 46  Q
    |||||||||||||||||||||||||||||    
T  40478833 taggcccaaacccaaagcccacactcaaa 40478861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 1085 - 1245
Alignment:
Q  43 caaaggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccgg 142  Q
    ||||||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1085 caaaggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccgg 1184  T
Q  143 tcttgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttg 203  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||||||    
T  1185 tcttgaaccggtccggtctagcgccctatataaaaccctagtgcgccggtttactcatttg 1245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 129917 - 130096
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  129917 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 130016  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  130017 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 130096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 7987272 - 7987093
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7987272 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 7987173  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  7987172 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 7987093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 30563526 - 30563705
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30563526 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 30563625  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  30563626 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 30563705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 27192365 - 27192186
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  27192365 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcctaaaccctagatctaagggctcacaacgcaggggattggaccggtct 27192266  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  27192265 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 27192186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 27204218 - 27204039
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  27204218 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcctaaaccctagatctaagggctcacaacgcaggggattggaccggtct 27204119  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  27204118 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 27204039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 27245013 - 27245192
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  27245013 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcctaaaccctagatctaagggctcacaacgcaggggattggaccggtct 27245112  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  27245113 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 27245192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 27256876 - 27257055
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  27256876 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcctaaaccctagatctaagggctcacaacgcaggggattggaccggtct 27256975  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  27256976 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 27257055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 30548255 - 30548403
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30548255 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 30548354  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggttt 194  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||||||    
T  30548355 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttt 30548403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 27002382 - 27002228
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  27002382 ggatccggatctcacaggaacgctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacgcatgggattggaccggtctt 27002283  T
Q  147 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcattt 202  Q
    |||||||||||||||||| |||||||| ||| ||||  |||||||||| |||||||    
T  27002282 gaaccggtccggtctagcactctatat-aaaccctagcgcgccggttttttcattt 27002228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 27017888 - 27017734
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  27017888 ggatccggatctcacaggaacgctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacgcatgggattggaccggtctt 27017789  T
Q  147 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcattt 202  Q
    |||||||||||||||||| |||||||| ||| ||||  |||||||||| |||||||    
T  27017788 gaaccggtccggtctagcactctatat-aaaccctagcgcgccggttttttcattt 27017734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 20133630 - 20133585
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatctaaaggctcaca 123  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  20133630 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 20133585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 22199239 - 22199284
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatctaaaggctcaca 123  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  22199239 cgttggattgatccaagatcaaaaaccctagatctaaaggctcaca 22199284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 22940514 - 22940556
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctata 172  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  22940514 gggattggaccggtcttgaaccggtccggtctagtggtctata 22940556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 23862958 - 23863000
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctata 172  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  23862958 gggattggaccggtcttgaaccggtccggtctagtggtctata 23863000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 30721773 - 30721806
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctag 163  Q
    ||||||||||||||||||||||||||||||||||    
T  30721773 gggattggaccggtcttgaaccggtccggtctag 30721806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 18939671 - 18939635
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| ||||||||||||||||||||||||||||||||    
T  18939671 aacgaaggggattggaccggtcttgaaccggtccggt 18939635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 22924802 - 22924844
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctata 172  Q
    |||||||| ||||||||||||||||||||||||| | ||||||    
T  22924802 gggattgggccggtcttgaaccggtccggtctaggggtctata 22924844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 25178812 - 25178762
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| |||| |||||||||| ||  ||||||||||||||||||||||||    
T  25178812 cagggagcgtttgattgatccaggaagccaaaccctagatctaaaggctca 25178762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 28198037 - 28198079
Alignment:
Q  133 attggaccggtcttgaaccggtccggtctagcgctctatataa 175  Q
    ||||||||||| ||||||||||||||||||| | |||||||||    
T  28198037 attggaccggtattgaaccggtccggtctaggggtctatataa 28198079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 4729574 - 4729603
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  4729574 gggattggaccggtcttgaaccggtccggt 4729603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 16997562 - 16997533
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  16997562 gggattggaccggtcttgaaccggtccggt 16997533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 27212673 - 27212644
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  27212673 gggattggaccggtcttgaaccggtccggt 27212644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 27236555 - 27236584
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  27236555 gggattggaccggtcttgaaccggtccggt 27236584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 27307883 - 27307912
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  27307883 gggattggaccggtcttgaaccggtccggt 27307912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 32782083 - 32782112
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  32782083 gggattggaccggtcttgaaccggtccggt 32782112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 12616596 - 12616560
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  12616596 aacgaaggggattggaccggtcttggaccggtccggt 12616560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 16346175 - 16346211
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  16346175 aacgaaggggattggaccggtcttggaccggtccggt 16346211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 27039099 - 27039071
Alignment:
Q  18 taggcccaaacccaaagcccacactcaaa 46  Q
    |||||||||||||||||||||||||||||    
T  27039099 taggcccaaacccaaagcccacactcaaa 27039071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 27067438 - 27067410
Alignment:
Q  18 taggcccaaacccaaagcccacactcaaa 46  Q
    |||||||||||||||||||||||||||||    
T  27067438 taggcccaaacccaaagcccacactcaaa 27067410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 17975003 - 17975182
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17975003 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 17975102  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  17975103 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 17975182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 17990551 - 17990730
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17990551 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 17990650  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  17990651 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 17990730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 18219844 - 18219665
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18219844 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 18219745  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  18219744 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 18219665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 18235152 - 18234973
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18235152 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 18235053  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  18235052 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 18234973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 28333934 - 28333780
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  28333934 ggatccggatttcacaggaacgctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacgcatgggattggaccggtctt 28333835  T
Q  147 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcattt 202  Q
    |||||||||||||||||| |||||||| ||| ||||  |||||||||| |||||||    
T  28333834 gaaccggtccggtctagcactctatat-aaaccctagcgcgccggttttttcattt 28333780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 28349036 - 28348882
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  28349036 ggatccggatttcacaggaacgctcagggatcgttggattgatccaagatcccaaaccctagatctaagggctcacaacgcatgggattggaccggtctt 28348937  T
Q  147 gaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcattt 202  Q
    |||||||||||||||||| |||||||| ||| ||||  |||||||||| |||||||    
T  28348936 gaaccggtccggtctagcactctatat-aaaccctagcgcgccggttttttcattt 28348882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 28166920 - 28166969
Alignment:
Q  126 gcaggggattggaccggtcttgaaccggtccggtctagcgctctatataa 175  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  28166920 gcaggggattggaccggtcttgaaccggtccggtctagtggtctatataa 28166969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 14142558 - 14142608
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  14142558 cagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 14142608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 18525098 - 18525048
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  18525098 cagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 18525048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 4653314 - 4653281
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctag 163  Q
    ||||||||||||||||||||||||||||||||||    
T  4653314 gggattggaccggtcttgaaccggtccggtctag 4653281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 23012594 - 23012643
Alignment:
Q  72 agggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    ||||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  23012594 agggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 23012643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 19448559 - 19448511
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggct 119  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  19448559 cagggagcgttggattgatccaggaagccaaaccctagatctaaaggct 19448511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 15365064 - 15365098
Alignment:
Q  80 ttggattgatccaagatcccaaaccctagatctaa 114  Q
    ||||||||||||||||| |||||||||||||||||    
T  15365064 ttggattgatccaagatgccaaaccctagatctaa 15365098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 1733997 - 1734026
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  1733997 gggattggaccggtcttgaaccggtccggt 1734026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 15883279 - 15883308
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  15883279 gggattggaccggtcttgaaccggtccggt 15883308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 15898458 - 15898487
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  15898458 gggattggaccggtcttgaaccggtccggt 15898487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 17904065 - 17904036
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  17904065 gggattggaccggtcttgaaccggtccggt 17904036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 17966888 - 17966917
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  17966888 gggattggaccggtcttgaaccggtccggt 17966917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 17997368 - 17997397
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  17997368 gggattggaccggtcttgaaccggtccggt 17997397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 19703925 - 19703896
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  19703925 gggattggaccggtcttgaaccggtccggt 19703896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 26685098 - 26685069
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  26685098 gggattggaccggtcttgaaccggtccggt 26685069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 47196840 - 47196869
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  47196840 gggattggaccggtcttgaaccggtccggt 47196869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 17786905 - 17786865
Alignment:
Q  52 cggatctcacagggacgctcagggatcgttggattgatcca 92  Q
    |||||| |||||| | |||||||||||||||||||||||||    
T  17786905 cggatcacacaggaaagctcagggatcgttggattgatcca 17786865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 19088426 - 19088386
Alignment:
Q  52 cggatctcacagggacgctcagggatcgttggattgatcca 92  Q
    |||||| |||||| | |||||||||||||||||||||||||    
T  19088426 cggatcacacaggaaagctcagggatcgttggattgatcca 19088386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 19364876 - 19364916
Alignment:
Q  52 cggatctcacagggacgctcagggatcgttggattgatcca 92  Q
    |||||| |||||| | |||||||||||||||||||||||||    
T  19364876 cggatcacacaggaaagctcagggatcgttggattgatcca 19364916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 16819643 - 16819822
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16819643 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 16819742  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  16819743 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 16819822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 16834884 - 16835063
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16834884 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 16834983  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  16834984 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 16835063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 16874865 - 16875044
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16874865 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaggggattggaccggtct 16874964  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  16874965 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 16875044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 32059692 - 32059513
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32059692 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcactacgcaggggattggaccggtct 32059593  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  32059592 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 32059513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 32044496 - 32044317
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||| ||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32044496 aggaaacggatctcccagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcactacgcaggggattggaccggtct 32044397  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  32044396 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 32044317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 35763580 - 35763431
Alignment:
Q  52 cggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtcttgaacc 151  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  35763580 cggatttcacaggaatgctcagggatcgttggattgatccaagatcccaaaccctagatctaatggctcacaacgcatgggattggaccggtcttgaacc 35763481  T
Q  152 ggtccggtctagcgctctatataaaagcctaatgcgccggtttattcattt 202  Q
    ||||||||||||| |||||||| ||| ||||  |||||||||| |||||||    
T  35763480 ggtccggtctagcactctatat-aaaccctagcgcgccggttttttcattt 35763431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 10116403 - 10116449
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctatataaa 176  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  10116403 gggattggaccggtcttgaaccggtccggtctagtggtctatataaa 10116449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 21693878 - 21693928
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  21693878 cagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 21693928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 21708659 - 21708709
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  21708659 cagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 21708709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 39884707 - 39884674
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatc 111  Q
    ||||||||||||||||||||||||||||||||||    
T  39884707 cgttggattgatccaagatcccaaaccctagatc 39884674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 39900283 - 39900250
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatc 111  Q
    ||||||||||||||||||||||||||||||||||    
T  39900283 cgttggattgatccaagatcccaaaccctagatc 39900250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 2731177 - 2731148
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  2731177 gggattggaccggtcttgaaccggtccggt 2731148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 13819449 - 13819478
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  13819449 gggattggaccggtcttgaaccggtccggt 13819478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 29439332 - 29439389
Alignment:
Q  64 ggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||||||||   |||| |||||||||| ||  ||||||||||||||||||||||||    
T  29439332 ggacgctcaggagccgttagattgatccaggaagccaaaccctagatctaaaggctca 29439389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 40195038 - 40195067
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  40195038 gggattggaccggtcttgaaccggtccggt 40195067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 28876742 - 28876706
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  28876742 aacgaaggggattggaccggtcttggaccggtccggt 28876706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 28891952 - 28891916
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  28891952 aacgaaggggattggaccggtcttggaccggtccggt 28891916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 4486592 - 4486771
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  4486592 aggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcagggaattggaccggtct 4486691  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  4486692 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 4486771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 17896873 - 17896831
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctata 172  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  17896873 gggattggaccggtcttgaaccggtccggtctaggggtctata 17896831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 554657 - 554628
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  554657 gggattggaccggtcttgaaccggtccggt 554628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 6053467 - 6053496
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  6053467 gggattggaccggtcttgaaccggtccggt 6053496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 14026245 - 14026274
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  14026245 gggattggaccggtcttgaaccggtccggt 14026274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 19669202 - 19669173
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  19669202 gggattggaccggtcttgaaccggtccggt 19669173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 19697697 - 19697664
Alignment:
Q  78 cgttggattgatccaagatcccaaaccctagatc 111  Q
    |||| |||||||||||||||||||||||||||||    
T  19697697 cgttagattgatccaagatcccaaaccctagatc 19697664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 21338264 - 21338293
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  21338264 gggattggaccggtcttgaaccggtccggt 21338293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 21378225 - 21378254
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  21378225 gggattggaccggtcttgaaccggtccggt 21378254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 24462254 - 24462283
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  24462254 gggattggaccggtcttgaaccggtccggt 24462283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 44570839 - 44570810
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  44570839 gggattggaccggtcttgaaccggtccggt 44570810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1536 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold1536
Description:

Target: scaffold1536; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 1196 - 1017
Alignment:
Q  46 aggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtct 145  Q
    |||| ||||||||||||||||  | |||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  1196 aggaaacggatctcacagggatacacagggaccgttggattgatccaaggtcctaaaccctagatctaagggctcacaacgcaggggattggaccggtct 1097  T
Q  146 tgaaccggtccggtctagcgctctatataaaagcctaatgcgccggtttattcatttgcaccaaatctttctctctctaa 225  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||   || | ||||||||||||||    
T  1096 tgaaccggtccggtctagcgccctatataaaaccctaacgcgccggttttttcatttgtcacacacctttctctctctaa 1017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 47767224 - 47767122
Alignment:
Q  43 caaaggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccgg 142  Q
    ||||||| ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  47767224 caaaggaaacggatctcacagggatactcagggaccgttggattgatccaaggtcccaaaccctagatctaagggctcacaacgcaagggattggaccgg 47767125  T
Q  143 tct 145  Q
    |||    
T  47767124 tct 47767122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 16653689 - 16653735
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctatataaa 176  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  16653689 gggattggaccggtcttgaaccggtccggtctagtggtctatataaa 16653735  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 16404846 - 16404800
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaagg 117  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  16404846 cagggagcgttggattgatccaggaagccaaaccctagatctaaagg 16404800  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 20344332 - 20344382
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| |||| |||||||||| ||  ||||||||||||||||||||||||    
T  20344332 cagggagcgttagattgatccaggaaaccaaaccctagatctaaaggctca 20344382  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 160
Target Start/End: Original strand, 36088884 - 36088914
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtc 160  Q
    |||||||||||||||||||||||||||||||    
T  36088884 gggattggaccggtcttgaaccggtccggtc 36088914  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 10938098 - 10938069
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  10938098 gggattggaccggtcttgaaccggtccggt 10938069  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 10957289 - 10957260
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  10957289 gggattggaccggtcttgaaccggtccggt 10957260  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 10972512 - 10972483
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  10972512 gggattggaccggtcttgaaccggtccggt 10972483  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 28579572 - 28579543
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  28579572 gggattggaccggtcttgaaccggtccggt 28579543  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 28594998 - 28594969
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  28594998 gggattggaccggtcttgaaccggtccggt 28594969  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 47353413 - 47353442
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  47353413 gggattggaccggtcttgaaccggtccggt 47353442  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 18292667 - 18292631
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  18292667 aacgaaggggattggaccggtcttggaccggtccggt 18292631  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 20455825 - 20455765
Alignment:
Q  99 caaaccctagatctaaaggctcacaacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||| || |||  | || | |||||||||||||||||||| |||||||||||    
T  20455825 caaaccctagatccaacggccaagaatggaggggattggaccggtcttggaccggtccggt 20455765  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 21480644 - 21480608
Alignment:
Q  123 aacgcaggggattggaccggtcttgaaccggtccggt 159  Q
    |||| |||||||||||||||||||| |||||||||||    
T  21480644 aacgaaggggattggaccggtcttggaccggtccggt 21480608  T

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Target: scaffold0021 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 179254 - 179180
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||    
T  179254 ggatacggatctcacatggacgctcagagatcgttggattgatccaggaagccaaaccctagatctaaaggctca 179180  T

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Target: scaffold0021; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 98317 - 98267
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  98317 cagggatcgttggattgatccaggaagccaaaccctagatctaaaggctca 98267  T

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Target: scaffold0750 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 152 - 202
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  152 cagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 17245 - 17295
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  17245 cagggagcgttggattgatccaggaagccaaaccctagatctaaaggctca 17295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 273 - 306
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctag 163  Q
    ||||||||||||||||||||||||||||||||||    
T  273 gggattggaccggtcttgaaccggtccggtctag 306  T

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Target: scaffold0393 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 6212 - 6100
Alignment:
Q  47 ggatacggatctcacagggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaaaggctcacaacgcaggggattggaccggtctt 146  Q
    |||| |||||| ||| || | |||||||||||||||||| |||||| ||  | ||| ||||||||||||||| || | |  |||| |||||||| |  ||    
T  6212 ggatccggatcacacgggaaagctcagggatcgttggatcgatccaggaagcaaaaacctagatctaaaggcgcagatcaaagggaattggaccagaatt 6113  T
Q  147 gaaccggtccggt 159  Q
    |||||||||||||    
T  6112 gaaccggtccggt 6100  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 21929 - 21881
Alignment:
Q  73 gggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  21929 gggagcgttggattgatccaggaaaccaaaccctagatctaaaggctca 21881  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 50915 - 50963
Alignment:
Q  73 gggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||| ||||||||||||||| ||  ||||||||||||||||||||||||    
T  50915 gggagcgttggattgatccaggaaaccaaaccctagatctaaaggctca 50963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1665 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1665
Description:

Target: scaffold1665; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 838 - 881
Alignment:
Q  68 gctcagggatcgttggattgatccaagatcccaaaccctagatc 111  Q
    ||||||| | |||||||||||||||||| |||||||||||||||    
T  838 gctcaggaaccgttggattgatccaagaccccaaaccctagatc 881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 991 - 945
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaagg 117  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  991 cagggagcgttggattgatccaggaagccaaaccctagatctaaagg 945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 6655 - 6705
Alignment:
Q  71 cagggatcgttggattgatccaagatcccaaaccctagatctaaaggctca 121  Q
    |||||| |||| |||||||||| ||  ||||||||||||||||||||||||    
T  6655 cagggagcgttagattgatccaggaaaccaaaccctagatctaaaggctca 6705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 209 - 259
Alignment:
Q  64 ggacgctcagggatcgttggattgatccaagatcccaaaccctagatctaa 114  Q
    |||||| |||| | |||||||| |||||||||| |||||||||||||||||    
T  209 ggacgcacaggaaccgttggatagatccaagatgccaaaccctagatctaa 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 22443 - 22401
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctata 172  Q
    |||||||||||||||||||| ||||||||||||| | ||||||    
T  22443 gggattggaccggtcttgaatcggtccggtctaggggtctata 22401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 37093 - 37051
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggtctagcgctctata 172  Q
    ||||||||||||||||||||||||| |||||||| | ||||||    
T  37093 gggattggaccggtcttgaaccggttcggtctaggggtctata 37051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1648 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1648
Description:

Target: scaffold1648; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 835 - 864
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  835 gggattggaccggtcttgaaccggtccggt 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 32876 - 32905
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  32876 gggattggaccggtcttgaaccggtccggt 32905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 165915 - 165886
Alignment:
Q  130 gggattggaccggtcttgaaccggtccggt 159  Q
    ||||||||||||||||||||||||||||||    
T  165915 gggattggaccggtcttgaaccggtccggt 165886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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