View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5588_high_18 (Length: 243)
Name: NF5588_high_18
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_high_18 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 1901181 - 1900954
Alignment:
| Q |
16 |
aaaactactttttattttaatctcctgaatcaacaaatcaaagcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1901181 |
aaaactactttttattttaatctcctgaatcaacaaatcaaagcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaa |
1901082 |
T |
|
| Q |
116 |
taatcttcctttaaaagctagttatcggtgggaaaaaaccaaaccacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1901081 |
taatcttcctttaaaagctagttatcggtgggaaaaaaccaaaccacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttgg |
1900982 |
T |
|
| Q |
216 |
caccccatattacccacatccgtagcac |
243 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
1900981 |
caccccatattacagacatccgtagcac |
1900954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 1910627 - 1910400
Alignment:
| Q |
16 |
aaaactactttttattttaatctcctgaatcaacaaatcaaagcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1910627 |
aaaactactttttattttaatctcctgaatcaacaaatcaaagcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaa |
1910528 |
T |
|
| Q |
116 |
taatcttcctttaaaagctagttatcggtgggaaaaaaccaaaccacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1910527 |
taatcttcctttaaaagctagttatcggtgggaaaaaaccaaaccacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttgg |
1910428 |
T |
|
| Q |
216 |
caccccatattacccacatccgtagcac |
243 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
1910427 |
caccccatattacagacatccgtagcac |
1910400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 1894307 - 1894081
Alignment:
| Q |
18 |
aactactttttattttaa-tctcctgaatcaacaaatcaaagcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaat |
116 |
Q |
| |
|
|||||||||||||||||| | || | || || ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1894307 |
aactactttttattttaaatttcattaagcagcaaatcaaattggtagaaaaa-taaatacaaggttgcattttgacatgcatttgagcgcttgggaaat |
1894209 |
T |
|
| Q |
117 |
aatcttcctttaaaagctagttatcggt-gggaaaaaaccaaaccacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttgg |
215 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
1894208 |
aatcttcctttaaaagctagttatcagtggggaaaaaaccaaaccacttaaatactacactgagcatcacattaacatactactcatcgtaggactttgg |
1894109 |
T |
|
| Q |
216 |
caccccatattacccacatccgtagcac |
243 |
Q |
| |
|
|||||||| || |||||||| |||||| |
|
|
| T |
1894108 |
taccccataataaccacatccatagcac |
1894081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 1903753 - 1903527
Alignment:
| Q |
18 |
aactactttttattttaa-tctcctgaatcaacaaatcaaagcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaat |
116 |
Q |
| |
|
|||||||||||||||||| | || | || || ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1903753 |
aactactttttattttaaatttcattaagcagcaaatcaaattggtagaaaaa-taaatacaaggttgcattttgacatgcatttgagcgcttgggaaat |
1903655 |
T |
|
| Q |
117 |
aatcttcctttaaaagctagttatcggt-gggaaaaaaccaaaccacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttgg |
215 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
1903654 |
aatcttcctttaaaagctagttatcagtggggaaaaaaccaaaccacttaaatactacactgagcatcacattaacatactactcatcgtaggactttgg |
1903555 |
T |
|
| Q |
216 |
caccccatattacccacatccgtagcac |
243 |
Q |
| |
|
|||||||| || |||||||| |||||| |
|
|
| T |
1903554 |
taccccataataaccacatccatagcac |
1903527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University