View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_high_7 (Length: 341)
Name: NF5588_high_7
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_high_7 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 5 - 341
Target Start/End: Original strand, 45283287 - 45283623
Alignment:
| Q |
5 |
ctcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaatt |
104 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283287 |
ctcaaccaattcctcatatcagcgatttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaatt |
45283386 |
T |
|
| Q |
105 |
gcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacatt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283387 |
gcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacatt |
45283486 |
T |
|
| Q |
205 |
gtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283487 |
gtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtct |
45283586 |
T |
|
| Q |
305 |
tgtgcgttttggcacataattctaagatttctttgtt |
341 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
45283587 |
tgtgagttttggcacataattctaagatttctttgtt |
45283623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 5 - 341
Target Start/End: Original strand, 45271513 - 45271849
Alignment:
| Q |
5 |
ctcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaatt |
104 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
45271513 |
ctcaaccaattcctcatatcagcagtttggtcatgaacagcttcaatgttgttgtcacgaacacagttgttggagaggtcaagactgtccaaagcgaatt |
45271612 |
T |
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| Q |
105 |
gcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacatt |
204 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271613 |
gcatcaagtctttgcagtcatcaagagccatcttggcaccatttttctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacatt |
45271712 |
T |
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| Q |
205 |
gtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtct |
304 |
Q |
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||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| |
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| T |
45271713 |
gtcagtggctgccttcacggctgctgctatgtatgccttagggtcagcggcatcggcgccacgcacagagctaagagtgtcatgacagagtttctggtct |
45271812 |
T |
|
| Q |
305 |
tgtgcgttttggcacataattctaagatttctttgtt |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
45271813 |
tgtgcgttttggcacataattctaagatttctttgtt |
45271849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 5 - 341
Target Start/End: Original strand, 45275046 - 45275382
Alignment:
| Q |
5 |
ctcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaatt |
104 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||| | |||||||||||||||||||||||||||| |
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| T |
45275046 |
ctcaaccaattcctcatatcagcagtttggtcatgaacagcttgaatgttgttgtcactaagacaattgtttgagaggtcaagactgtccaaagcgaatt |
45275145 |
T |
|
| Q |
105 |
gcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacatt |
204 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
45275146 |
gcatcaagtccttgcagtcatcaagagccatcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacatt |
45275245 |
T |
|
| Q |
205 |
gtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtct |
304 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
45275246 |
gtcagtggctgccttcacggcggctgctatgtatgccttagggtcagcggcatcggcgccatgcacagagctaagagtttcatggcagagtttctggtct |
45275345 |
T |
|
| Q |
305 |
tgtgcgttttggcacataattctaagatttctttgtt |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
45275346 |
tgtgcgttttggcacataattctaagatttctttgtt |
45275382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 323
Target Start/End: Original strand, 45294675 - 45294993
Alignment:
| Q |
5 |
ctcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaatt |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45294675 |
ctcaaccaattcctcatatcagcggtttggtcatgaacagcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaatt |
45294774 |
T |
|
| Q |
105 |
gcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacatt |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45294775 |
gcatcaagtccttgcagtcattaagagccatcttggtaccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacatt |
45294874 |
T |
|
| Q |
205 |
gtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtct |
304 |
Q |
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||| ||||||||||| || | |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| |
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| T |
45294875 |
gtcagtggctgcctttacagcggctgctatgtatgccttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtca |
45294974 |
T |
|
| Q |
305 |
tgtgcgttttggcacataa |
323 |
Q |
| |
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| ||| ||||||||||||| |
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| T |
45294975 |
tctgcattttggcacataa |
45294993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 323
Target Start/End: Original strand, 45303635 - 45303953
Alignment:
| Q |
5 |
ctcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaatt |
104 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303635 |
ctcaaccaattcctcatatcagcggtttggtcatgaacagcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaatt |
45303734 |
T |
|
| Q |
105 |
gcatcaagtccttgcagtcattaagagccatcttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacatt |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45303735 |
gcatcaagtccttgcagtcattaagagccatcttggtaccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacatt |
45303834 |
T |
|
| Q |
205 |
gtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtct |
304 |
Q |
| |
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||| ||||||||||| || | |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| |
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| T |
45303835 |
gtcagtggctgcctttacagcggctgctatgtatgccttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtca |
45303934 |
T |
|
| Q |
305 |
tgtgcgttttggcacataa |
323 |
Q |
| |
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| ||| ||||||||||||| |
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| T |
45303935 |
tctgcattttggcacataa |
45303953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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