View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_high_8 (Length: 316)
Name: NF5588_high_8
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 14596001 - 14595715
Alignment:
| Q |
17 |
ttagtaatgtatctatgt-aagtctagctccagatacttgatgtgtctttggttacatattataggactaattaagtaaatttcttttctcttgattgtt |
115 |
Q |
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| T |
14596001 |
ttagtaatgtatctatgttaagtctagctccagatacttgatgtgtctttggttacatattataggactaattaagtaaatttcttttctgttgattgtt |
14595902 |
T |
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| Q |
116 |
gataatgatgtaggcttgattggaaaaacaacatggaagtaaatgagattaaaatgatttgttgtgatatattaatttatactatattaaattgatgata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14595901 |
gataatgatgtaggcttgattggaaaaacaacatggaagtaaatgagattaaaatgatttgttgtgatatattaatttatactatattaaattgatgata |
14595802 |
T |
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| Q |
216 |
atttgatacattttatgaacagataactttaaacatattcactatagtgtactgttgggaattagttaagtaatgaagttcataatg |
302 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14595801 |
atttgatacattttatgaacagataacttgaaacatattcactatagtgtactgttgggaattagttaagtaatgaagttcataatg |
14595715 |
T |
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