View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5588_low_1 (Length: 867)
Name: NF5588_low_1
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 620; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 18 - 753
Target Start/End: Complemental strand, 39955886 - 39955162
Alignment:
| Q |
18 |
ttaaagtggggaatataccatagaagtttgcaatgcagtgacaacttcctatttatttataaagatcgttggctttagcaatcaattgaacaatgaatgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955886 |
ttaaagtggggaatataccatagaagttagcaatgcagtgacaacttcctatttatttataaagatcgttggctttagcaatcaattgaacaatgaatgc |
39955787 |
T |
|
| Q |
118 |
tttcctctgtggcagaaaagaagcttttaatgactctgcttgttgtgcacttcacattaagatataggggaaattaaactttttaggcatgaaaaggaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39955786 |
tttcctctgtggcagaaaagaagcttttaatgactctgcttgttgtgcacttcacattaagatataggggaaattaaacttttgaggcatgaaaaggaga |
39955687 |
T |
|
| Q |
218 |
gatgggcacgttgggttgaatacagtattagacaattaaataaaattgtaacatttggaatattgttaagaatattaattagttctgtaataaagtacac |
317 |
Q |
| |
|
|||| || ||| | ||| | || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955686 |
gatgaataca---ggtattagaca--aataaataaataaataaaattgtaacatttggaatattgttaagaatattaattagttctgtaataaagtacac |
39955592 |
T |
|
| Q |
318 |
taggattggaagacagaacatattttattgatttctaggctactatcataaggcactaacatattacatatgtatatatcatctttataatattgtttag |
417 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955591 |
taggattggaa------acatattttattgatttctaggctactatcataaggcactaacatattacatatgtatatatcatctttataatattgtttag |
39955498 |
T |
|
| Q |
418 |
agaactatatagtattttaaactaattaaaccatatctagagagctacaatactaggcttattccttggaatccccttaagcaatttccctgagaatgtc |
517 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955497 |
agaactatatagtattttaaactaattgaaccatatctagagagctacaatactaggcttattccttggaatccccttaagcaatttccctgagaatgtt |
39955398 |
T |
|
| Q |
518 |
tcaataagtttgttgaactcaaatggggtcttccatttcttggcagattccttagctatgaagcttctcattcttacattttcctgcttcagcatatcta |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39955397 |
tcaataagtttgttgaactcaaatggggtcttccatttcttggcagattccttagctatgaagcttctcatttttacattttcctgcttcagcatatcta |
39955298 |
T |
|
| Q |
618 |
ttgttgaactcagctgtcttattacctctattttctctttgtctttcagcttcagatcattcttctgagtcctattctcttctctaaaactttctctctc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955297 |
ttgttgaactcagctgtcttattacctctattttctctttgtctttcagcttcagatcattcttctgagtcctattctcttctctaaaactttctctctc |
39955198 |
T |
|
| Q |
718 |
ttccatcaacatcattacttcatcacaaatggtata |
753 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955197 |
ttccatcaacatcattacttcatcacaaatggtata |
39955162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 814 - 852
Target Start/End: Complemental strand, 39955101 - 39955063
Alignment:
| Q |
814 |
cctcaacttcattacttcattgcaaatggtatctttctg |
852 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955101 |
cctcaacttcattacttcattgcaaatggtatctttctg |
39955063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 814 - 854
Target Start/End: Complemental strand, 39954750 - 39954710
Alignment:
| Q |
814 |
cctcaacttcattacttcattgcaaatggtatctttctgat |
854 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
39954750 |
cctcaacttcattacgtcattacaaatggtatctttctgat |
39954710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University