View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_low_10 (Length: 295)
Name: NF5588_low_10
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 25 - 287
Target Start/End: Original strand, 53820336 - 53820598
Alignment:
| Q |
25 |
cgaagcaaatgacattgctaccccgttgaaaaatgcaacggatacagaaaccgttaaactcataacatcttcaatcacacgtccaagttcaacactatct |
124 |
Q |
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| T |
53820336 |
cgaagcaaatgacattgctaccccgttgaaaaatgcaacggatacagaaaccgttaaactcataacatcttcaatcacacgtccaagttcaacactatct |
53820435 |
T |
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| Q |
125 |
gaaactgacaacaacgttggtgaagatgaataaacaggaacatgcaattgttgttgttgtgtgacattcagattcacacaacggattccagaaactagtt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820436 |
gaaactgacaacaacgttggtgaagatgaataaacaggaacatgcaattgttgttgttgtgtgacattcagattcacacaacggattccagaaactagtt |
53820535 |
T |
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| Q |
225 |
tctcaatttccttactcaacttcttcttagcttttaaatatataactaactttgattcatctc |
287 |
Q |
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| T |
53820536 |
tctcaatttccttactcaacttcttcttagcttttaaatatataactaactttgattcatctc |
53820598 |
T |
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