View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_low_13 (Length: 265)
Name: NF5588_low_13
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 47493126 - 47493389
Alignment:
| Q |
1 |
tatatgtatcccaaaacctgaatttgtattcttgtttcctccatttcctagctgtaaaaccaataaatccaattacaaaacaattttttgtctagtaaca |
100 |
Q |
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| T |
47493126 |
tatatgtatcccaaaacctgaatttgtattcttgtttcctccatttcctagctgtaaaaccaataaatccaattccaaaacaattttttgtctagtaaca |
47493225 |
T |
|
| Q |
101 |
atcaatacttatctgttgtaagttttcccccctctctctcttggtgatatgatactattgcaaaaagtaacaaagaaagacaacacataatcttcacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47493226 |
atcaatacttatctgttgtaagttttcccccctctctctcttggtgatatgatactattgcaaaaagtaacaaagaaagacaacacataatcttcacata |
47493325 |
T |
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| Q |
201 |
aaattgttaaaacttcaaaaagttcatattttgggattttcttgatgcggccccttcttctcac |
264 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
47493326 |
aaattgttaaaacttcaaaaagttcaaattttgggattttcttgatgcggtcccttcttgtcac |
47493389 |
T |
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