View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5588_low_16 (Length: 250)

Name: NF5588_low_16
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5588_low_16
NF5588_low_16
[»] chr2 (11 HSPs)
chr2 (1-241)||(40016583-40016827)
chr2 (9-233)||(7702429-7702661)
chr2 (10-234)||(24479151-24479383)
chr2 (4-233)||(15513667-15513902)
chr2 (4-233)||(30267003-30267239)
chr2 (9-233)||(31342585-31342816)
chr2 (9-233)||(44920958-44921188)
chr2 (4-127)||(27151101-27151229)
chr2 (13-233)||(7718185-7718412)
chr2 (153-210)||(41573416-41573473)
chr2 (153-233)||(11017457-11017537)
[»] chr7 (12 HSPs)
chr7 (74-233)||(26621029-26621191)
chr7 (74-233)||(26608477-26608639)
chr7 (4-233)||(4685267-4685503)
chr7 (4-229)||(9242348-9242580)
chr7 (74-233)||(26619042-26619202)
chr7 (91-233)||(30089735-30089880)
chr7 (4-233)||(20277222-20277460)
chr7 (153-233)||(26205435-26205515)
chr7 (10-110)||(3374523-3374628)
chr7 (4-56)||(19746806-19746858)
chr7 (153-230)||(26224998-26225075)
chr7 (153-219)||(16086501-16086567)
[»] chr8 (16 HSPs)
chr8 (9-233)||(14997621-14997853)
chr8 (3-233)||(6801687-6801930)
chr8 (4-229)||(19369774-19370006)
chr8 (74-232)||(5650883-5651044)
chr8 (4-229)||(19448452-19448684)
chr8 (4-229)||(19532392-19532624)
chr8 (4-231)||(45355976-45356210)
chr8 (4-233)||(28248943-28249175)
chr8 (74-232)||(29345432-29345594)
chr8 (3-233)||(17634334-17634571)
chr8 (4-233)||(5528743-5528979)
chr8 (4-233)||(25638807-25639043)
chr8 (4-233)||(25637644-25637879)
chr8 (9-72)||(18767085-18767149)
chr8 (153-233)||(6403593-6403673)
chr8 (157-233)||(29553629-29553705)
[»] chr5 (15 HSPs)
chr5 (14-233)||(17037543-17037768)
chr5 (84-233)||(30786267-30786419)
chr5 (74-233)||(19984995-19985157)
chr5 (74-224)||(12042114-12042268)
chr5 (4-233)||(5078929-5079164)
chr5 (4-70)||(23616678-23616744)
chr5 (4-70)||(23848075-23848141)
chr5 (183-233)||(31571029-31571079)
chr5 (153-233)||(31068983-31069062)
chr5 (153-231)||(9333581-9333659)
chr5 (153-233)||(9354409-9354489)
chr5 (171-233)||(16411591-16411652)
chr5 (4-49)||(38449843-38449888)
chr5 (153-233)||(7410824-7410904)
chr5 (154-210)||(10869460-10869516)
[»] chr3 (12 HSPs)
chr3 (4-233)||(1627810-1628047)
chr3 (3-135)||(28745075-28745212)
chr3 (74-233)||(27259392-27259545)
chr3 (4-229)||(13845996-13846228)
chr3 (81-233)||(9633387-9633542)
chr3 (153-232)||(26707860-26707939)
chr3 (4-231)||(2550168-2550402)
chr3 (4-233)||(1654576-1654812)
chr3 (90-228)||(2943168-2943309)
chr3 (4-233)||(7407618-7407854)
chr3 (153-229)||(16457351-16457427)
chr3 (153-210)||(5498501-5498558)
[»] chr6 (17 HSPs)
chr6 (4-229)||(14669210-14669442)
chr6 (4-233)||(12591833-12592069)
chr6 (4-233)||(15361715-15361951)
chr6 (4-233)||(16734805-16735041)
chr6 (4-229)||(17719587-17719819)
chr6 (3-233)||(11936630-11936867)
chr6 (156-233)||(9631178-9631255)
chr6 (153-224)||(23264516-23264587)
chr6 (183-233)||(4591150-4591200)
chr6 (153-210)||(4485585-4485642)
chr6 (3-56)||(11948610-11948663)
chr6 (153-221)||(10935801-10935869)
chr6 (153-233)||(23904372-23904452)
chr6 (15-70)||(10070824-10070879)
chr6 (153-200)||(29667935-29667982)
chr6 (4-57)||(6684283-6684336)
chr6 (177-233)||(15690438-15690494)
[»] chr4 (11 HSPs)
chr4 (153-232)||(4881089-4881168)
chr4 (4-229)||(1684816-1685048)
chr4 (4-231)||(43600269-43600503)
chr4 (4-233)||(47065898-47066134)
chr4 (153-232)||(4904160-4904239)
chr4 (4-134)||(27739637-27739774)
chr4 (4-229)||(1152048-1152280)
chr4 (4-233)||(53300351-53300590)
chr4 (152-210)||(24559014-24559072)
chr4 (157-210)||(21539295-21539348)
chr4 (155-224)||(48464049-48464118)
[»] chr1 (12 HSPs)
chr1 (153-234)||(5911684-5911765)
chr1 (13-233)||(51758753-51758980)
chr1 (3-134)||(18308249-18308386)
chr1 (74-233)||(28636903-28637065)
chr1 (153-233)||(16222778-16222858)
chr1 (167-233)||(37097374-37097440)
chr1 (153-234)||(897454-897535)
chr1 (153-210)||(3399645-3399702)
chr1 (153-210)||(12189975-12190032)
chr1 (153-233)||(15214327-15214407)
chr1 (153-200)||(1843985-1844032)
chr1 (153-224)||(13208621-13208692)
[»] scaffold0576 (1 HSPs)
scaffold0576 (4-233)||(6699-6935)
[»] scaffold0069 (1 HSPs)
scaffold0069 (4-226)||(40562-40791)
[»] scaffold0684 (1 HSPs)
scaffold0684 (4-229)||(611-843)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40016827 - 40016583
Alignment:
Q  1 gtaacacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaattataatgtaacattttacgacacttttt 100  Q
    |||||| ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  40016827 gtaacatattttacaatttctcgaaaattataaatgtaatatttttttattgttactgatgatgctaaaaattataatgtaacattttacgatacttttt 40016728  T
Q  101 gaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaaca 196  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||| ||||| |||||||||||||||    
T  40016727 gaatgttacagataatacaataaaatgtaattaaaatctctttagtaatagggtctttacctaacaattattcaaatgttactaaatttaatcagtaaca 40016628  T
Q  197 ttttacttgatttaataataattttcaagtgttactatgcctatg 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40016627 ttttacttgatttaataataattttcaagtgttactatgcctatg 40016583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 7702661 - 7702429
Alignment:
Q  9 ttttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacactttttgaa 103  Q
    |||||||||||||| |||||||||||||||| |   ||||| ||||||   |||||| ||||     || ||||||||||||||||||||| ||||| ||    
T  7702661 ttttacaacttctcaaaaattataaatgtaataactttttagtgttacgagtgatacaaaaagtgttataataatgtaacattttacgacaatttttaaa 7702562  T
Q  104 tgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaacattt 199  Q
    ||||||||| ||||| | ||||||||| ||||  || |||||||||| ||   ||||||||||||| | |||||| |||||  |||||| | ||||||||    
T  7702561 tgttacagataatactacaaaatgtaactaaag-ctctttagtaatatgggctttacctaacaattgtacaaatgttactaattttaattaataacattt 7702463  T
Q  200 tacttgatttaataataattttcaagtgttacta 233  Q
    |  || ||||| |||||||||||| |||||||||    
T  7702462 tttttaatttagtaataattttcatgtgttacta 7702429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 24479383 - 24479151
Alignment:
Q  10 tttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacactttttgaat 104  Q
    |||||||||||   ||||| |||||||||| ||| ||| ||||||| || || ||| ||||||      ||| |||||| ||||||||||||||||||||    
T  24479383 tttacaacttcataaaaatgataaatgtaaaattttttaattgttaatggtggtacaaaaaatgttacaatagtgtaaccttttacgacactttttgaat 24479284  T
Q  105 gttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaacatttt 200  Q
    |||| ||| ||||| ||||||| ||| ||||  || |||||||| | |    |||||||| |||| |||||||| ||||| ||||||| ||||||| ||     
T  24479283 gttatagataatactataaaatataactaaag-ctctttagtaacacgagctttacctaagaattgttcaaatgttactaaatttaattagtaacagtta 24479185  T
Q  201 acttgatttaataataattttcaagtgttactat 234  Q
     ||||||||| |||||||||||||||||||||||    
T  24479184 tcttgatttagtaataattttcaagtgttactat 24479151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 15513902 - 15513667
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| ||||||||||| |||||| | ||| |||||||||  |||||| ||||      | |||||||||||  || |||||||||    
T  15513902 acactttttacaacttctcaaaaattataaacgtaacactttttaattgttactagtgatacaaaaagtgttctaataatgtaaca--ttgcgacacttt 15513805  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaa---tagggttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| || |||||| | ||| ||||||||||| | |||||||||||||||    ||  ||||||||||||| ||||| || ||| | ||||||  |||||    
T  15513804 ttgattgatacagatagtactataaaatgtaact-aaatctttttagtaacacgagctttacctaacaattgttcaagtgttacaaaatttaactagtaa 15513706  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | |||||| || ||||||||    
T  15513705 catttttcttgatttacttacaatttttaattgttacta 15513667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 30267239 - 30267003
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||  ||| |||||||||||||| | |||||||||||||  | |||| |||| |      ||| ||||||||||  |||||||||    
T  30267239 acactttttacaacttcttaaaatttataaatgtaacacttttttattgttactagttatacaaaaagtgttacaatagtgtaacatttg-cgacacttt 30267141  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| |||||| || | ||| ||||||||||| ||||| || ||| |||| | ||   ||||||||||||| ||||  || ||||| ||||||| | |||    
T  30267140 ttgattgttacggatagtactataaaatgtaactaaaa-ctctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaa 30267042  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | ||||||||||||||||||    
T  30267041 catttttcttgatttagttacaattttcaagtgttacta 30267003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 31342585 - 31342816
Alignment:
Q  9 ttttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacactttttgaa 103  Q
    |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  | |||||||||||     
T  31342585 ttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-caacactttttgat 31342683  T
Q  104 tgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaacattt 199  Q
    ||||||||| | ||| ||||||||||| ||||| |  |||||||| | ||   ||| ||||||||| ||||| || | ||| ||||||| ||||||||||    
T  31342684 tgttacagatagtactataaaatgtaactaaaa-cactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacattt 31342782  T
Q  200 tacttgatttaataataattttcaagtgttacta 233  Q
    | ||||||||| | | ||||||||||||||||||    
T  31342783 ttcttgatttagttacaattttcaagtgttacta 31342816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 44921188 - 44920958
Alignment:
Q  9 ttttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacactttttgaa 103  Q
    |||||||||||||| |||||||||||||||||| | |||||||||||||  |||||| ||||     |  ||| ||||||| ||| ||||| ||||| |     
T  44921188 ttttacaacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaagtgttacaatagtgtaaca-tttgcgacatttttttat 44921090  T
Q  104 tgttacaga-aatacaataaaatgtaattaaaatctttttagtaa---tagggttacctaacaattattcaaatgatactagatttaatcagtaacattt 199  Q
    |||||| || | ||| ||||||||||| ||||| || ||||||||    ||  ||||||||||||| || |  || ||||| ||||||| ||||||||||    
T  44921089 tgttacggatagtactataaaatgtaactaaaa-ctctttagtaacacgagctttacctaacaattgtttaggtgttactaaatttaattagtaacattt 44920991  T
Q  200 tacttgatttaataataattttcaagtgttacta 233  Q
    |  |||||||| | | ||||||||||||||||||    
T  44920990 t-tttgatttagttacaattttcaagtgttacta 44920958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 27151101 - 27151229
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattctttt-attgttactgatgatactaaaaatt-----ataatgtaacattttacgacactt 97  Q
    |||| |||||||||||||  |||||||||||||||| ||| |||| | |||||| | |||||| |||| |      |||| ||||||||||||||||| |    
T  27151101 acactttttacaacttcttaaaaattataaatgtaatattttttttagtgttaccggtgatacaaaaagtgttacaataaggtaacattttacgacacat 27151200  T
Q  98 tttgaatgttacagaaatacaataaaatgt 127  Q
    ||||||| |||||| ||||| |||||||||    
T  27151201 tttgaattttacag-aatactataaaatgt 27151229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 7718412 - 7718185
Alignment:
Q  13 acaacttctcgaaaattataaatgtaacattcttttattgttactga-tgatactaaaaatt-----ataatgtaacattttacgacactttttgaatgt 106  Q
    |||||||||| |||||||||||||||||||| ||||||||||| | | |||||| |||| |      |||||| |||||||  ||||| ||||| | | |    
T  7718412 acaacttctcaaaaattataaatgtaacatt-ttttattgttattaagtgatacaaaaagtgttacaataatgcaacatttg-cgacatttttttattat 7718315  T
Q  107 tacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaacattttac 202  Q
    ||| || | ||| ||||||||||||||||| || |||||||| | ||   ||| ||||||||| ||||  || ||||| ||||||| ||||| ||||| |    
T  7718314 tacggatagtactataaaatgtaattaaaa-ctctttagtaacacggactttatctaacaattgttcatgtgttactaaatttaattagtaatatttttc 7718216  T
Q  203 ttgatttaataataattttcaagtgttacta 233  Q
    |||||||| | | ||||||||||| ||||||    
T  7718215 ttgatttagttacaattttcaagtattacta 7718185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 41573473 - 41573416
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgattta 210  Q
    ||||||||||||| || || || ||||| ||||||| ||||||||||| |||||||||    
T  41573473 ttacctaacaattgtttaactgttactaaatttaattagtaacatttttcttgattta 41573416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 11017537 - 11017457
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||||||||||  ||||||| ||||| ||||||| ||||||| ||| ||| ||||| |||   ||||||| ||||||||    
T  11017537 ttacctaacaattggtcaaatgttactaaatttaattagtaacaattttctttatttagtaacggttttcaattgttacta 11017457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 26621029 - 26621191
Alignment:
Q  74 ataatgtaacattttacgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattc 169  Q
    |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| | ||| || |||||||| | ||   ||| ||||||||| ||     
T  26621029 ataatgtaacattttatgacactttttgaatgttacagataatactataaaatgtaact-aaagctctttagtaacatggcttttatctaacaattgttt 26621127  T
Q  170 aaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||| | ||| ||||||||||||||||||| ||| ||||| ||| ||||||||||||||||||    
T  26621128 aaatgttgctaaatttaatcagtaacatttttcttaatttagtaacaattttcaagtgttacta 26621191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 26608477 - 26608639
Alignment:
Q  74 ataatgtaacattttacgacactttttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattc 169  Q
    ||||||||||||||| ||||||||||||| ||||| ||| | ||| |||||||| || ||||  || |||||||| | ||   ||| ||||||||| |||    
T  26608477 ataatgtaacattttgcgacactttttgattgttatagatagtactataaaatgcaactaaag-ctctttagtaacatgggctttatctaacaattgttc 26608575  T
Q  170 aaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||| ||||| ||||||||||||||||||| |||||||| |||| ||||||||| ||||||||    
T  26608576 aaatgttactaaatttaatcagtaacatttttcttgatttcataacaattttcaaatgttacta 26608639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 4685267 - 4685503
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  |||||||||    
T  4685267 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-cgacacttt 4685365  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||||| | ||| ||||||||||| ||||| |  |||||||||| ||   ||||||||||||| ||||| || | ||| ||||||| | |||    
T  4685366 ttgattgttacagatagtactataaaatgtaactaaaa-cactttagtaatacgggctttacctaacaattgttcaagtgttgctaaatttaattactaa 4685464  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | ||||||||||||||||||    
T  4685465 catttttcttgatttagttacaattttcaagtgttacta 4685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 9242348 - 9242580
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||||||||||| | ||| ||||||| |  |||||| |||| |      ||||||||||||||  |||||||||    
T  9242348 acactttttacaacttctcaaaaattataaatgtaacactttttcattgttaatagtgatacaaaaagtgttacaataatgtaacatttg-cgacacttt 9242446  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||| ||| ||||| ||||||||||| ||||| || |||||||| | ||   ||| ||||||||| ||||| || ||| | ||||||| |||||    
T  9242447 ttaattgttatagataatactataaaatgtaactaaaa-ctctttagtaacatggactttatctaacaattgttcaagtgttacaaaatttaattagtaa 9242545  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    || ||| ||||||||| | | ||||||||||||||    
T  9242546 caattttcttgatttagttacaattttcaagtgtt 9242580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 26619042 - 26619202
Alignment:
Q  74 ataatgtaacattttacgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaa--tagggtt-acctaacaattattc 169  Q
    |||||||| |||||| ||||||||||||||||||||| | ||||| || |||||||| |||| | | ||||||||  |||| || ||||| ||||| |||    
T  26619042 ataatgtagcattttgcgacactttttgaatgttacaaataatactatcaaatgtaactaaagt-tctttagtaacataggatttaccta-caattgttc 26619139  T
Q  170 aaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||| || || ||||||||||||||||||| ||||||||| ||| || |||||||||||||||    
T  26619140 aaatgttaataaatttaatcagtaacatttttcttgatttagtaacaa-tttcaagtgttacta 26619202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 30089880 - 30089735
Alignment:
Q  91 gacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagattta 186  Q
    |||||||||||||||||| | | ||||| ||||||||||| ||||  || |||||||| | ||   || |||||||||| |||||||| ||||| || ||    
T  30089880 gacactttttgaatgttaaaaataatactataaaatgtaactaaag-ctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatata 30089782  T
Q  187 atcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||||||||||| ||||||||| ||| | ||||||||||||||||    
T  30089781 atcagtaacatttttcttgatttagtaacagttttcaagtgttacta 30089735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 20277222 - 20277460
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaat-----tataatgtaacattttacgaca-ctt 97  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||| |||| || |||||| |||| |      ||||| ||||||||| | |||  ||    
T  20277222 acactttttacaacttctcaaaaattataaatgtaacatttttttatcgttattggtgatacaaaaagtgtttcaataatataacattttgctacatttt 20277321  T
Q  98 tttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaatagg---gttacctaacaattattcaaatgatactagatttaatcagta 193  Q
    ||| | ||||||||| ||||| ||| ||||||| | ||| || |||||||| |||    ||||||||||||| || ||||| ||||| ||||||| | ||    
T  20277322 ttttattgttacagataatactatataatgtaact-aaagctctttagtaacaggtgctttacctaacaattgtttaaatgttactaaatttaattaata 20277420  T
Q  194 acattttacttgatttaataataattttcaagtgttacta 233  Q
    | |||||  |||||||| | | ||||||| ||||||||||    
T  20277421 atattttttttgatttagttacaattttcgagtgttacta 20277460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 26205435 - 26205515
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||||| ||||| ||||| || ||||| ||||||| ||||||||||| ||||||||| | ||||||||||||||| ||||    
T  26205435 ttacctaccaatttttcaagtgttactaaatttaattagtaacatttttcttgatttagttataattttcaagtgtcacta 26205515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 3374628 - 3374523
Alignment:
Q  10 tttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacactttttgaat 104  Q
    ||||||||||||  |||||||||||||||||| | |||||||||||||| |||||| ||||     |  ||||||| | ||||| ||| |||||||||||    
T  3374628 tttacaacttctaaaaaattataaatgtaacacttttttattgttactggtgatacaaaaagtgttacaataatgtgatattttgcgatactttttgaat 3374529  T
Q  105 gttaca 110  Q
    ||||||    
T  3374528 gttaca 3374523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 19746858 - 19746806
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttac 56  Q
    |||| |||||||||||||| |||||||||||||||||| | ||||||||||||    
T  19746858 acactttttacaacttctcaaaaattataaatgtaacacttttttattgttac 19746806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 26224998 - 26225075
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgtta 230  Q
    |||||||| |||| ||||| || ||||| ||||||| |||| |||||| ||||||||| | | |||||||||||||||    
T  26224998 ttacctaataattgttcaagtgttactaaatttaattagtatcatttttcttgatttagttacaattttcaagtgtta 26225075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 16086567 - 16086501
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataatt 219  Q
    |||||||||||||||||||||| || || ||||||| ||||||| |||   ||||||||||| ||||    
T  16086567 ttacctaacaattattcaaatgttattaaatttaattagtaacagtttttctgatttaataacaatt 16086501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 14997853 - 14997621
Alignment:
Q  9 ttttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacactttttgaa 103  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||| | |||||| |||| |      |||||||||  |||| ||||| ||||||||    
T  14997853 ttttacaacttatcaaaaattataaatgtaacatttttttagtgttaccggtgatacaaaaagtgttacaataatgtaatgttttgcgacattttttgaa 14997754  T
Q  104 tgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaacattt 199  Q
    ||||||||  ||||| |||||| |||| ||||  || |||||||| | ||   ||||||||||||| | |||||| |||||  ||||| |||||||||||    
T  14997753 tgttacagttaatactataaaaggtaactaaag-ctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaaccagtaacattt 14997655  T
Q  200 tacttgatttaataataattttcaagtgttacta 233  Q
    | ||||| ||| ||||||||||||||||| ||||    
T  14997654 ttcttgaattagtaataattttcaagtgtcacta 14997621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 6801687 - 6801930
Alignment:
Q  3 aacacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgaca--- 94  Q
    ||||| |||||| | ||| | ||||| ||||||||||||||  ||||| |||||||||||||| |||| |      ||||||||||||||| |||||       
T  6801687 aacactttttactaattcgcaaaaatgataaatgtaacatttctttatggttactgatgatacaaaaagtgttacaataatgtaacattttgcgacagta 6801786  T
Q  95 --ctttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaat 188  Q
      |||||| ||||||||||  |||||  |||||||||| ||||| || |||||||| ||||   ||||||||||||| ||||| || ||||| |||||||    
T  6801787 cacttttttaatgttacagctaatactctaaaatgtaactaaaa-ctctttagtaacaggggctttacctaacaattgttcaactgttactaaatttaat 6801885  T
Q  189 cagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
     |||||||||||  |||||||| ||||| ||||||||||||||||    
T  6801886 tagtaacatttttattgatttagtaatagttttcaagtgttacta 6801930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 19369774 - 19370006
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||||||||||  |||||| ||||     |  ||||||||||| ||| |||||||||    
T  19369774 acactttttacaacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaagtgttacaataatgtaaca-tttgcgacacttt 19369872  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||||| ||||| ||||||||||| ||||| || |||||||| | ||   ||| ||||||||| ||| | || | | | ||||||| |||||    
T  19369873 ttaattgttacagataatactataaaatgtaactaaaa-ctctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaa 19369971  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    |||||| ||||||||| | | ||||||||||||||    
T  19369972 catttttcttgatttagttacaattttcaagtgtt 19370006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 232
Target Start/End: Original strand, 5650883 - 5651044
Alignment:
Q  74 ataatgtaacattttacgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattc 169  Q
    |||||||||||||||  |||||| ||||||||||| ||| ||||| |||||||| || ||||  |||||| |||| | ||   ||||||||||||| |||    
T  5650883 ataatgtaacattttgtgacactatttgaatgttatagataataccataaaatgcaactaaag-cttttttgtaacaagggttttacctaacaattgttc 5650981  T
Q  170 aaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttact 232  Q
    ||||| | ||| ||| ||| ||||||||||| ||||||||| ||||| |||||||||||||||    
T  5650982 aaatgttgctaaattgaattagtaacatttttcttgatttagtaatagttttcaagtgttact 5651044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 19448684 - 19448452
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||||||||||  |||||| ||||     |  ||||||||||| ||| |||||||||    
T  19448684 acactttttacaacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaagtgttacaataatgtaaca-tttgcgacacttt 19448586  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||||| ||||| ||||||| ||| ||||| || |||||||| | ||   ||| ||||||||| ||| | || | | | ||||||| |||||    
T  19448585 ttaattgttacagataatactataaaatataactaaaa-ctctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaa 19448487  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    |||||| ||||||||| | | ||||||||||||||    
T  19448486 catttttcttgatttagttacaattttcaagtgtt 19448452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 19532392 - 19532624
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||||||||||  |||||| ||||     |  ||||||||||| ||| |||||||||    
T  19532392 acactttttacaacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaagtgttacaataatgtaaca-tttgcgacacttt 19532490  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||||| ||||| ||||||| ||| ||||| || |||||||| | ||   ||| ||||||||| ||| | || | | | ||||||| |||||    
T  19532491 ttaattgttacagataatactataaaatataactaaaa-ctctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaa 19532589  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    |||||| ||||||||| | | ||||||||||||||    
T  19532590 catttttcttgatttagttacaattttcaagtgtt 19532624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 45355976 - 45356210
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  |||||||||    
T  45355976 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-cgacacttt 45356074  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||||| | ||| ||||||||||| ||||| |  |||||||| | ||   ||||||||||||| ||||| || | ||| ||||||| |||||    
T  45356075 ttgattgttacagatagtactataaaatgtaactaaaa-cactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaa 45356173  T
Q  195 cattttacttgatttaataataattttcaagtgttac 231  Q
    |||||| ||||||||| | | ||||||||||||||||    
T  45356174 catttttcttgatttagttacaattttcaagtgttac 45356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 28248943 - 28249175
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  |||||||||    
T  28248943 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-cgacacttt 28249041  T
Q  99 ttgaatgttacagaaatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaac 195  Q
    |||| ||||||||   ||| ||||||||||| ||||| |  |||||||| | ||   ||||||||||||| ||||| || | ||| ||||||| ||||||    
T  28249042 ttgattgttacag---tactataaaatgtaactaaaa-cactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaac 28249137  T
Q  196 attttacttgatttaataataattttcaagtgttacta 233  Q
    ||||| ||||||||| | | ||||||||||||||||||    
T  28249138 atttttcttgatttagttacaattttcaagtgttacta 28249175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 29345594 - 29345432
Alignment:
Q  74 ataatgtaacattttacgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattc 169  Q
    ||||||||||||||| | |||| || ||| ||||||| | ||||| ||||||||||| |||| | | |||||||| ||||   ||||||||||||| |||    
T  29345594 ataatgtaacattttgcaacacattctgattgttacaaataatactataaaatgtaactaaagtttgtttagtaagaggggctttacctaacaattgttc 29345495  T
Q  170 aaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttact 232  Q
    ||| | ||||| ||||||| ||||| ||||| ||||||||| | | ||||||| |||||||||    
T  29345494 aaaggttactaaatttaattagtaatatttttcttgatttagttacaattttcgagtgttact 29345432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 17634334 - 17634571
Alignment:
Q  3 aacacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacactt 97  Q
    ||||| |||||||||||||| ||||| ||||||| ||||||  |||||||||| || ||||||  ||| |      ||||||||| ||||  ||||||||    
T  17634334 aacactttttacaacttctcaaaaatgataaatgcaacatttatttattgttattggtgatacataaagtgttacaataatgtaatatttg-cgacactt 17634432  T
Q  98 tttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagta 193  Q
    ||||| ||||||||| | ||| ||||||||||| |||| | | |||||||| | ||   ||||||| ||||| ||||| || || || ||||||| ||||    
T  17634433 tttgattgttacagatagtactataaaatgtaactaaatt-tctttagtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagta 17634531  T
Q  194 acattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||||| ||||||||| | | ||||||||| ||||||||    
T  17634532 acatttttcttgatttagttacaattttcaaatgttacta 17634571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 5528979 - 5528743
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||| ||||||| | ||||||||||||| ||||||| ||||     |  ||||||| | | ||| |||||||||    
T  5528979 acactttttacaacttctcaaaaattataattgtaacacttttttattgttactaatgatacaaaaagtgttacaataatgttata-tttgcgacacttt 5528881  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||||| |||||  |||||||||| ||||| || |||||||| |  |   ||| ||||||||| ||  | || | ||| ||||||| |||||    
T  5528880 ttaactgttacagataatactgtaaaatgtaactaaaa-ctctttagtaacacagactttatctaacaattgtttgagtgttgctaaatttaattagtaa 5528782  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | ||||||||||||||||||    
T  5528781 catttttcttgatttagttacaattttcaagtgttacta 5528743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 25639043 - 25638807
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  ||||| |||    
T  25639043 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-cgacatttt 25638945  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| |||||| || | ||| ||||||||||| ||||| |  |||||||| | ||   ||||||||||||| ||||| || | ||| ||||||| |||||    
T  25638944 ttgattgttacggatagtactataaaatgtaactaaaa-cactttagtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaa 25638846  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | ||||||||||||||||||    
T  25638845 catttttcttgatttagttacaattttcaagtgttacta 25638807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 25637879 - 25637644
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||||||||||| | |  ||||||||||  |||||| |||| |      |||||||| |||||  | |||||||    
T  25637879 acactttttacaacttctcaaaaattataaatgtaacactttagtattgttactagtgatacaaaaagtgttacaataatgtagcatttg-caacacttt 25637781  T
Q  99 ttgaatgttacagaaatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaac 195  Q
    || | |||||||  ||||| ||||||||||| |||||| | |||||||| | ||   ||||||||||||| ||| | || | ||| ||||||| ||||||    
T  25637780 ttaattgttacaataatactataaaatgtaactaaaat-tctttagtaacacgggctttacctaacaattgttcgagtgttgctaaatttaattagtaac 25637682  T
Q  196 attttacttgatttaataataattttcaagtgttacta 233  Q
    | ||| ||| ||||| | | ||||||||||||||||||    
T  25637681 agttttcttaatttagttacaattttcaagtgttacta 25637644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 18767149 - 18767085
Alignment:
Q  9 ttttacaacttctcgaaaattataaatgtaaca-ttcttttattgttactgatgatactaaaaat 72  Q
    |||||||||||||| |||||||||||||||||| || |||||||||||||  |||||| ||||||    
T  18767149 ttttacaacttctcaaaaattataaatgtaacactttttttattgttactagtgatacaaaaaat 18767085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 6403673 - 6403593
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||||||||||  ||||||| ||||| ||||||| ||||||||||| ||| ||||| | | || |||||| ||||||||    
T  6403673 ttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttaatttagttacaaatttcaattgttacta 6403593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 29553705 - 29553629
Alignment:
Q  157 ctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||||||  ||||||| | ||| ||||||| ||||||||||| ||||||||  | | ||||||||| ||||||||    
T  29553705 ctaacaattgctcaaatgttgctaaatttaattagtaacatttttcttgatttggttacaattttcaattgttacta 29553629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 17037768 - 17037543
Alignment:
Q  14 caacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacactttttgaatgtta 108  Q
    ||||||||  |||||||||||||||||| | |||||||||||||  |||||| |||| |      ||||||||||||||  ||||||||||| | |||||    
T  17037768 caacttcttaaaaattataaatgtaacact-ttttattgttactagtgatacaaaaagtgttacaataatgtaacatttg-cgacactttttaattgtta 17037671  T
Q  109 caga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaacattttactt 204  Q
    |||| ||||| ||||||||||| ||||| || |||||||| |  |   ||||||||||||| |||||||| ||||| ||||||| ||||||||||| |||    
T  17037670 cagataatactataaaatgtaactaaaa-ctctttagtaacactgactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttctt 17037572  T
Q  205 gatttaataataattttcaagtgttacta 233  Q
    |||||| | |  |||||||||||||||||    
T  17037571 gatttagttacgattttcaagtgttacta 17037543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 30786419 - 30786267
Alignment:
Q  84 attttacgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatact 179  Q
    ||||| ||||||||||| | ||||||| | ||||  ||||||||| | |||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  30786419 attttgcgacacttttttattgttacaaataataacataaaatgtgactaaa-tctttttagtaacaaggcatttacctaacaattattcaaatgttact 30786321  T
Q  180 agatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    | ||| ||||||||||||||| ||||||| | | | ||||||||||||||||||    
T  30786320 aaattgaatcagtaacatttttcttgattaagttacaattttcaagtgttacta 30786267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 233
Target Start/End: Complemental strand, 19985157 - 19984995
Alignment:
Q  74 ataatgtaacattttacgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattc 169  Q
    ||||||||||||||| | ||||||||||| | ||||| | ||||| ||||||||||| ||||| || ||||||||   ||   |||||||||||||||||    
T  19985157 ataatgtaacattttgcaacactttttgattattacatataatactataaaatgtaactaaaa-ctctttagtaacctggactttacctaacaattattc 19985059  T
Q  170 aaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||| ||||| || |||| ||||||||||| ||||||||| | |  |||||| ||||||||||    
T  19985058 aaatgttactaaatctaattagtaacattttccttgatttagttaccattttcgagtgttacta 19984995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 12042114 - 12042268
Alignment:
Q  74 ataatgtaacattttacgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaatagg----gttacctaacaattatt 168  Q
    |||||||| |||||| ||||||||||| | | ||||| | ||||  ||||||||||| ||||| || ||||||||||||     ||||||||||||| ||    
T  12042114 ataatgtatcattttgcgacacttttttattattacaaataataatataaaatgtaactaaaa-ctctttagtaataggtttctttacctaacaattgtt 12042212  T
Q  169 caaatgatactagatttaatcagtaacattttacttgatttaataataattttcaa 224  Q
    |||||| ||||| ||| ||||||||||||||| ||||||||| | | |||||||||    
T  12042213 caaatgttactaaattgaatcagtaacatttttcttgatttagttacaattttcaa 12042268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 5078929 - 5079164
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  | |||||||    
T  5078929 acactttttacaactcctc-aaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-caacacttt 5079026  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||||| | ||| ||||||||||| ||||| |  |||||||| | ||   ||||||||||||| ||||| || | ||| ||||||| |||||    
T  5079027 ttgattgttacagatagtactataaaatgtaactaaaa-cactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaa 5079125  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | ||||||||||||||||||    
T  5079126 catttttcttgatttagttacaattttcaagtgttacta 5079164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 23616678 - 23616744
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa 70  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||||||||||  |||||| ||||    
T  23616678 acactttttacaacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaa 23616744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 23848075 - 23848141
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa 70  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||||||||||  |||||| ||||    
T  23848075 acactttttacaacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaa 23848141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 31571079 - 31571029
Alignment:
Q  183 tttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  31571079 tttaatcagtaacatttttcttgttttaataacaattttcaagtgttacta 31571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 31068983 - 31069062
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||||||||||| ||||| || ||||| ||||||| ||||||||||| ||||||||| | | |||||| |||||||||||    
T  31068983 ttacctaacaattgttcaa-tgttactaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttacta 31069062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 9333581 - 9333659
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttac 231  Q
    |||||||||||||  ||||||| ||||| ||||||| ||||||||||| ||||||||  | | ||||||||| ||||||    
T  9333581 ttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgattttgttacaattttcaattgttac 9333659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 9354409 - 9354489
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||||||||||  ||||||| || || ||||||| ||||||||||| ||||||| | | | ||||||||| ||||||||    
T  9354409 ttacctaacaattgctcaaatgttattaaatttaattagtaacatttttcttgattcagttacaattttcaattgttacta 9354489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 16411652 - 16411591
Alignment:
Q  171 aatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||| |||||||| |||||||||||||||| | ||||||| |||| |||||||| ||||||||    
T  16411652 aatgttactagatataatcagtaacatttttcgtgatttagtaat-attttcaaatgttacta 16411591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 38449843 - 38449888
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattctttta 49  Q
    |||| |||||||||||||| ||||||||||||| |||||| |||||    
T  38449843 acactttttacaacttctcaaaaattataaatgaaacattttttta 38449888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 7410904 - 7410824
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||||||||||| ||||| || | ||| ||||||| |||||||||||  |||||||| | | |||||| || ||||||||    
T  7410904 ttacctaacaattgttcaagtgttgctaaatttaattagtaacattttttttgatttagttacaattttgaaatgttacta 7410824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 10869516 - 10869460
Alignment:
Q  154 tacctaacaattattcaaatgatactagatttaatcagtaacattttacttgattta 210  Q
    |||||||||||| |||||||| ||||| ||||||| ||||||| ||| | |||||||    
T  10869516 tacctaacaattgttcaaatgttactaaatttaattagtaacaattttcatgattta 10869460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 1627810 - 1628047
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa--atta----taatgtaacattttacgacactt 97  Q
    |||| |||||||||||||  |||||||||||||||||| | |||||||||||||  |||||  ||||  ||||    |||||||||||||  ||||||||    
T  1627810 acactttttacaacttctaaaaaattataaatgtaacacttttttattgttactagtgatataaaaagtattacaaataatgtaacatttg-cgacactt 1627908  T
Q  98 tttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagta 193  Q
    ||| | ||||||| | ||||| ||||||||||| ||||| || ||| |||| | ||   |||| |||||||| ||||| || ||||| ||||||| ||||    
T  1627909 tttaattgttacatataatactataaaatgtaactaaaa-ctcttttgtaacacggactttacttaacaattgttcaagtgttactaaatttaattagta 1628007  T
Q  194 acattttacttgatttaataataattttcaagtgttacta 233  Q
    | ||||| ||||||||| | | ||||||||||||||||||    
T  1628008 atatttttcttgatttagttacaattttcaagtgttacta 1628047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 28745212 - 28745075
Alignment:
Q  3 aacacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacactt 97  Q
    ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||     |  ||||||||| ||||| ||||||||    
T  28745212 aacactttttacaaattctcaaaaatgataaatgtaacatt-ttttattgttactgatgatacaaaaagtgttacaataatgtaaaattttgcgacactt 28745114  T
Q  98 tttgaatgttacaga-aatacaataaaatgtaattaaaa 135  Q
    ||||||||||||| | |||||  |||||||||| |||||    
T  28745113 tttgaatgttacaaataatactctaaaatgtaactaaaa 28745075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 27259392 - 27259545
Alignment:
Q  74 ataatgtaacattttacgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaatagggttacctaacaattattcaaa 172  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| | ||| || |||||||| |  |  |      |||| ||||||    
T  27259392 ataatgtaacattttacgacactttttgaatgttacagataatactctaaaatgtaact-aaagctctttagtaacaaaggga------aattgttcaaa 27259484  T
Q  173 tgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    || ||||| ||||||| ||||||||||| ||||||||| ||||| ||||||| ||||||||    
T  27259485 tgttactaaatttaattagtaacattttgcttgatttagtaatagttttcaattgttacta 27259545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 13846228 - 13845996
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  |||||||||    
T  13846228 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-cgacacttt 13846130  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||||| | ||| ||||||||||| ||||| |  |||||||| | ||   ||||||||||||| ||||| || | ||| ||||||| |||||    
T  13846129 ttgattgttacagatagtactataaaatgtaactaaaa-cactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaa 13846031  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    |||||| ||||||||| | | ||||||||||||||    
T  13846030 catttttcttgatttagttacaattttcaagtgtt 13845996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 9633387 - 9633542
Alignment:
Q  81 aacattttacgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgat 176  Q
    |||||||| ||||| ||||||||||||||| | ||| |  |||||||||| ||||| || |||||||| ||||   ||||||||||||| || |||||      
T  9633387 aacattttgcgacattttttgaatgttacatataatgctctaaaatgtaactaaaa-ctctttagtaacaggggctttacctaacaattgtttaaatgta 9633485  T
Q  177 actagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||| ||||||| |||||||||||  | |||||| ||||| ||||||||||||||||    
T  9633486 actaaatttaattagtaacatttttttcgatttagtaatagttttcaagtgttacta 9633542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 26707939 - 26707860
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttact 232  Q
    ||||||||||||| |||||||| ||||| ||||||| ||||||||||| ||||||||| |||  |||||||| |||||||    
T  26707939 ttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgatttagtaaccattttcaaatgttact 26707860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 2550402 - 2550168
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  |||||||||    
T  2550402 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-cgacacttt 2550304  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||| | | ||| ||||||||||| ||||| |  |||||||| |  |   ||||||||||||| ||||| || | ||| ||||||| |||||    
T  2550303 ttgattgttacaaatagtactataaaatgtaactaaaa-cactttagtaacacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaa 2550205  T
Q  195 cattttacttgatttaataataattttcaagtgttac 231  Q
    |||||| ||||||||| | | ||||||||||||||||    
T  2550204 catttttcttgatttagttacaattttcaagtgttac 2550168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 1654812 - 1654576
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| ||||||      |||| ||| |||||  |||||||||    
T  1654812 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaaatgttacaataaggtaccatttg-cgacacttt 1654714  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||||| | ||| ||||||||||| ||||| |  |||| ||| |  |   |||| |||||||| ||||| || | ||| ||||||| |||||    
T  1654713 ttgattgttacagatagtactataaaatgtaactaaaa-cactttaataacacaggctttacttaacaattgttcaagtgttgctaaatttaattagtaa 1654615  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | ||||||||| ||||||||    
T  1654614 catttttcttgatttagttacaattttcaattgttacta 1654576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 228
Target Start/End: Original strand, 2943168 - 2943309
Alignment:
Q  90 cgacactttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagattt 185  Q
    ||||||||||| | ||||||||| ||||| ||||||||||| ||||| |  |||||||| | ||   | ||||||||||| ||| |||| ||||| ||||    
T  2943168 cgacactttttaattgttacagataatactataaaatgtaactaaaa-cactttagtaacacgggcttaacctaacaattgttcgaatgttactaaattt 2943266  T
Q  186 aatcagtaacattttacttgatttaataataattttcaagtgt 228  Q
    ||| ||||||||||| ||||||||||| | || ||||||||||    
T  2943267 aattagtaacatttttcttgatttaattacaaatttcaagtgt 2943309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 7407618 - 7407854
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||  |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  |||||||||    
T  7407618 acactttttacaactccttaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-cgacacttt 7407716  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| |||||| || | ||| ||||||||||| ||||| |  |||||||| | ||   ||||||||||||| ||||| || | ||| ||||||| |||||    
T  7407717 ttgattgttactgatagtactataaaatgtaactaaaa-cactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaa 7407815  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
     ||||| ||||||||| | | ||||||||||||||||||    
T  7407816 tatttttcttgatttagttacaattttcaagtgttacta 7407854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 16457351 - 16457427
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgtt 229  Q
    |||||||||||||  ||||||| ||||| ||||||| ||||||||||| ||||||||| | | ||||||||| ||||    
T  16457351 ttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgatttagttacaattttcaattgtt 16457427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 5498558 - 5498501
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgattta 210  Q
    ||||||||||||| |||| | | ||||| ||||||| ||||||||||| |||||||||    
T  5498558 ttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgattta 5498501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 14669210 - 14669442
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||| ||||||| |||||||||||||||||| | |||||||||||||  |||||| |||| |      ||||||||||||||   ||||||||    
T  14669210 acactttttacgacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaagtgttacaataatgtaacatttgt-gacacttt 14669308  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||| | ||||| ||||||||||| ||||| || |||||||| | ||   ||||||||||||||||| | || | | | ||||||| |||||    
T  14669309 ttaattgttacaaataatactataaaatgtaactaaaa-ctctttagtaacacggactttacctaacaattattcgagtgttgcaaaatttaattagtaa 14669407  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    |||||| ||||||||| | | ||||||||||||||    
T  14669408 catttttcttgatttagttacaattttcaagtgtt 14669442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 12592069 - 12591833
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| ||||||||||  |||||| | ||||||||| |||  |||||| |||| |      ||||||||||||||  |||||||||    
T  12592069 acactttttacaacttctcaaaaattataatagtaacacttttttattgtgactagtgatacaaaaagtgttacaataatgtaacatttg-cgacacttt 12591971  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||||| ||||| ||||| ||||| ||||| || |||||||| | ||   ||||||||||||| ||| |  | ||||| ||||||| | |||    
T  12591970 ttaattgttacagataatactataaattgtaactaaaa-ctctttagtaacacgggctttacctaacaattgttcgagcgttactaaatttaattactaa 12591872  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | ||||||||||||||||||    
T  12591871 catttttcttgatttagttacaattttcaagtgttacta 12591833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 15361951 - 15361715
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| ||     |||| ||| |||||  | |||||||    
T  15361951 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagttttacaataaggtaccatttg-caacacttt 15361853  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||||| | ||| ||||||||||| ||||| | ||||||||| |  |   ||||||||||||| ||||| || | ||| ||||||| |||||    
T  15361852 ttgattgttacagatagtactataaaatgtaactaaaa-cattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaa 15361754  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | |||||| |||||||||||    
T  15361753 catttttcttgatttagttacaatttttaagtgttacta 15361715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 16735041 - 16734805
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   ||||||  ||| |      |||| ||| |||||  ||| |||||    
T  16735041 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacagaaagtgttacaataaggtaccatttg-cgatacttt 16734943  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||||| | ||| ||||||||||| ||||| |  |||||||| | ||   ||||||||||||| |||||||| | ||| ||||||| |||||    
T  16734942 ttgattgttacagatagtactataaaatgtaactaaaa-cactttagtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaa 16734844  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | ||||||||||||||||||    
T  16734843 catttttcttgatttagttacaattttcaagtgttacta 16734805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 17719587 - 17719819
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||||||||||  |||||| ||||     |  ||||||||||| ||| |||||||||    
T  17719587 acactttttacaacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaagtgttacaataatgtaaca-tttgcgacacttt 17719685  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||||| ||||| ||||| ||||| ||||| || |||||||| | ||   ||| ||||||||| ||| | || | | | | ||||| |||||    
T  17719686 ttaattgttacagataatactataaattgtaactaaaa-ctctttagtaacacggactttatctaacaattgttcgagtgttgcaaaaattaattagtaa 17719784  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    |||||| ||||||||| | | ||||||||||||||    
T  17719785 catttttcttgatttagttacaattttcaagtgtt 17719819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 11936630 - 11936867
Alignment:
Q  3 aacacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacactt 97  Q
    ||||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  ||||| ||    
T  11936630 aacactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-cgacattt 11936728  T
Q  98 tttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagta 193  Q
    ||| | ||||||||| | ||| ||||||||||| ||||| |  |||||||| | ||   ||| ||||||||| ||||| || | ||| ||||||| ||||    
T  11936729 ttttattgttacagatagtactataaaatgtaactaaaa-cactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagta 11936827  T
Q  194 acattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||||| ||||||||| | | ||||||||||||||||||    
T  11936828 acatttttcttgatttagttacaattttcaagtgttacta 11936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 9631178 - 9631255
Alignment:
Q  156 cctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||||||| |||||||| ||||| ||||| | |||||| || | ||||||||| ||||| ||||||||||||||||    
T  9631178 cctaacaattgttcaaatgttactaaatttacttagtaacgttcttcttgatttagtaatagttttcaagtgttacta 9631255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 23264516 - 23264587
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaa 224  Q
    ||||||||||||| ||| |||| ||||| ||||||| ||||||| ||| ||||||||| ||| |||||||||    
T  23264516 ttacctaacaattgttcgaatgttactaaatttaattagtaacaattttcttgatttagtaacaattttcaa 23264587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 4591200 - 4591150
Alignment:
Q  183 tttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||||| |||||||||| ||||||||| ||||||||||||| ||||||||    
T  4591200 tttaatcggtaacatttttcttgatttagtaataattttcaaatgttacta 4591150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 4485585 - 4485642
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgattta 210  Q
    |||||||||||||||||||||  ||||| ||||||| |||| |||||| |||||||||    
T  4485585 ttacctaacaattattcaaatattactaaatttaattagtaccattttccttgattta 4485642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 11948610 - 11948663
Alignment:
Q  3 aacacattttacaacttctcgaaaattataaatgtaacattcttttattgttac 56  Q
    ||||| |||||||||| ||| |||||||||||||||||| | ||||||||||||    
T  11948610 aacactttttacaactcctcaaaaattataaatgtaacacttttttattgttac 11948663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 10935801 - 10935869
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataatttt 221  Q
    ||||||||||||| |||||||| |||| ||| |||| ||||||||||| | ||||||| ||||| ||||    
T  10935801 ttacctaacaattgttcaaatgttactggatataattagtaacatttttcatgatttagtaatattttt 10935869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 23904372 - 23904452
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||||||||||| |||||||| ||||| ||| | | |||||| |||| ||| ||||| ||  ||||||||||||||||||    
T  23904372 ttacctaacaattgttcaaatgttactaaattgatttagtaacttttttcttcatttagtagcaattttcaagtgttacta 23904452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 10070879 - 10070824
Alignment:
Q  15 aacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa 70  Q
    ||||| || |||||||||||||||||| | ||||||||||||| ||||||| ||||    
T  10070879 aacttttcaaaaattataaatgtaacacttttttattgttactaatgatacaaaaa 10070824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 29667935 - 29667982
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacatttt 200  Q
    ||||||||||||| |||||||| ||||| ||||||| |||||||||||    
T  29667935 ttacctaacaattgttcaaatgttactaaatttaattagtaacatttt 29667982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 6684336 - 6684283
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttact 57  Q
    |||| |||||||||||||| ||| ||||||| |||||| | |||||||||||||    
T  6684336 acactttttacaacttctcaaaatttataaacgtaacactattttattgttact 6684283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 15690494 - 15690438
Alignment:
Q  177 actagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||| ||||||| ||||||||||| ||||||||| | | ||||||||| ||||||||    
T  15690494 actaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttacta 15690438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 4881089 - 4881168
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttact 232  Q
    ||||||||||||||| |||||  ||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  4881089 ttacctaacaattatacaaatattactaaatttaatcagtaacatttttcttgatttagtaacaattttcaagtgttact 4881168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 1684816 - 1685048
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||||||||||  |||||| ||||     |  ||| ||||||| ||| |||||||||    
T  1684816 acactttttacaacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaagtgttacaatattgtaaca-tttgcgacacttt 1684914  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||||| ||||| ||||| ||||| ||||| || |||||||| | ||   ||| ||||||||| ||| | || | | | ||||||| |||||    
T  1684915 ttaattgttacagataatactataaattgtaactaaaa-ctctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaa 1685013  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    |||||| ||||||||| | | ||||||||||||||    
T  1685014 catttttcttgatttagttacaattttcaagtgtt 1685048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 43600503 - 43600269
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| |      |||| ||| |||||  |||||||||    
T  43600503 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagtgttacaataaggtaccatttg-cgacacttt 43600405  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||||| | ||| ||||||||||| ||||| |  |||||||| | ||   ||||||||||||| ||||| |  | ||| ||||||| |||||    
T  43600404 ttgattgttacagatagtactataaaatgtaactaaaa-cactttagtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaa 43600306  T
Q  195 cattttacttgatttaataataattttcaagtgttac 231  Q
    |||||| ||||||||| | | ||||||||||||||||    
T  43600305 catttttcttgatttagttacaattttcaagtgttac 43600269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 47065898 - 47066134
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||  ||| |||||||||||||| | |||||||||||||  | |||| |||| |      ||| ||||||||||  |||||||||    
T  47065898 acactttttacaacttcttaaaatttataaatgtaacacttttttattgttactagttatacaaaaagtgttacaatagtgtaacatttg-cgacacttt 47065996  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| |||||| || | ||| ||||||||||| ||||| || ||| |||| | ||   ||||||||||||| ||||  || ||||| ||||||| | |||    
T  47065997 ttgattgttacggatagtactataaaatgtaactaaaa-ctctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaa 47066095  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | ||||||||||||||||||    
T  47066096 catttttcttgatttagttacaattttcaagtgttacta 47066134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 4904160 - 4904239
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttact 232  Q
    ||||||||||||| | |||||| ||||| ||||||||||||||||||| | ||||||| ||| |||||| ||||||||||    
T  4904160 ttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttcatgatttagtaacaatttttaagtgttact 4904239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 27739637 - 27739774
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaat-----tataatgtaaca-ttttacgacactt 97  Q
    |||| |||||||||| ||| |||||||||||||||||||| ||||||||||| |  |||||| ||||||      ||||||||| | |||| ||||||||    
T  27739637 acactttttacaactcctcaaaaattataaatgtaacatttttttattgttagtattgatacaaaaaatgttacaataatgtaaaagtttttcgacactt 27739736  T
Q  98 tttgaatgttacaga-aatacaataaaatgtaattaaa 134  Q
    ||||| | ||||||| ||||| ||||||||||| ||||    
T  27739737 tttgattcttacagataatactataaaatgtaactaaa 27739774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 1152280 - 1152048
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||||||||||  |||||| ||||     |  |||||||||||||| | ||||||||    
T  1152280 acactttttacaacttctcaaaaattataaatgtaacacttttttattgttactagtgatacaaaaagtgttacaataatgtaacatttga-gacacttt 1152182  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||||| ||||  ||||| ||||| ||||| || |||||||| | ||   ||| ||||||||| ||  | || | | | ||||||| |||||    
T  1152181 ttaattgttacagataatattataaactgtaactaaaa-ctctttagtaacacggactttatctaacaattgtttgagtgttgcaaaatttaattagtaa 1152083  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    |||||| ||| ||||| | | ||||||||||||||    
T  1152082 catttttcttaatttagttacaattttcaagtgtt 1152048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 53300590 - 53300351
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa--attataa------tgtaacattttacgacac 95  Q
    |||| |||||||||||||  ||| |||||||||||||| | |||||||||||||  | |||| ||||   ||| ||      ||||||| ||| ||||||    
T  53300590 acactttttacaacttcttaaaatttataaatgtaacacttttttattgttactagttatacaaaaagtgttacaatagtgttgtaaca-tttgcgacac 53300492  T
Q  96 tttttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcag 191  Q
    ||||||| |||||| || | ||| ||||||||||| ||||| || ||| |||| | ||   ||||||||||||| || |  || ||||| ||||||| |     
T  53300491 tttttgattgttacggatagtacgataaaatgtaactaaaa-ctctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaattac 53300393  T
Q  192 taacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||||||| ||||||||||| | ||||||||||||||||||    
T  53300392 taacatttttcttgatttaattacaattttcaagtgttacta 53300351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 24559014 - 24559072
Alignment:
Q  152 gttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgattta 210  Q
    |||||||||||||  |||||||| ||||| ||||||| ||||||||||| |||||||||    
T  24559014 gttacctaacaatcgttcaaatgttactaaatttaattagtaacatttttcttgattta 24559072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 21539295 - 21539348
Alignment:
Q  157 ctaacaattattcaaatgatactagatttaatcagtaacattttacttgattta 210  Q
    ||||||||| || ||||| ||||| ||||||||||||||||||| |||||||||    
T  21539295 ctaacaattgtttaaatgttactaaatttaatcagtaacattttccttgattta 21539348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 48464118 - 48464049
Alignment:
Q  155 acctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaa 224  Q
    ||||||||||| |||||||| ||||| ||||||| |||||||||||  || ||||| ||| |||||||||    
T  48464118 acctaacaattgttcaaatgttactaaatttaattagtaacatttttatttatttagtaacaattttcaa 48464049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 5911684 - 5911765
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttactat 234  Q
    ||||||||||||| ||||| || ||||| ||||||||||||||||||| ||||||||| | | |||||||||||||||||||    
T  5911684 ttacctaacaattgttcaagtgttactaaatttaatcagtaacatttttcttgatttagttaaaattttcaagtgttactat 5911765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 51758980 - 51758753
Alignment:
Q  13 acaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacactttttgaatgtt 107  Q
    |||||||||| ||||| |||||||||||| | |||||||||||||| |||||| ||||     |  ||||||||||| ||| | ||||||||| | ||||    
T  51758980 acaacttctcaaaaatcataaatgtaacacttttttattgttactggtgatacaaaaagtgttacaataatgtaaca-tttgcaacactttttaattgtt 51758882  T
Q  108 acaga-aatacaataaaatgtaattaaaatctttttagtaat---agggttacctaacaattattcaaatgatactagatttaatcagtaacattttact 203  Q
    ||||| ||||| ||||||||||| ||||| || |||||||||   ||  |||||||| |||| ||| | || | ||| ||||||| | ||||||||| ||    
T  51758881 acagataatactataaaatgtaactaaaa-ctctttagtaatacgagctttacctaataattgttcgagtgttgctaaatttaattactaacatttttct 51758783  T
Q  204 tgatttaataataattttcaagtgttacta 233  Q
    ||||||| | | ||||||||| ||||||||    
T  51758782 tgatttagttacaattttcaaatgttacta 51758753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 18308386 - 18308249
Alignment:
Q  3 aacacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacactt 97  Q
    ||||| ||||| |||||||| |||||||||||||||||||| || || |||||  | |||||| |||| |      |||||||||||||||  |||||||    
T  18308386 aacactttttataacttctcaaaaattataaatgtaacatttttctagtgttatcggtgatacaaaaagtgttacaataatgtaacattttgtgacactt 18308287  T
Q  98 tttgaatgttacaga-aatacaataaaatgtaattaaa 134  Q
    ||||||||||||| | ||||| ||||||||||| ||||    
T  18308286 tttgaatgttacaaacaatactataaaatgtaactaaa 18308249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 233
Target Start/End: Complemental strand, 28637065 - 28636903
Alignment:
Q  74 ataatgtaacattttacgacactttttgaatgttacagaaat-acaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattc 169  Q
    ||||||||||||| | ||||||||||||| |||   ||| || || ||||||||||| |||| ||| ||||| || || |   |||||||||||||||||    
T  28637065 ataatgtaacattgtgcgacactttttgattgtcgtagatattactataaaatgtaactaaa-tctctttagcaacagtgactttacctaacaattattc 28636967  T
Q  170 aaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||| ||||| ||| ||| ||||||||||| ||||||||| | | |||||| || ||||||||    
T  28636966 aaatgttactaaattgaattagtaacatttttcttgatttagttacaatttttaaatgttacta 28636903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 16222858 - 16222778
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||||||||||||||||| || ||||| |||| || ||||||||||| ||||||||| | | ||||||||| ||||||||    
T  16222858 ttacctaacaattattcaagtgttactaaattttattagtaacatttttcttgatttagttacaattttcaaatgttacta 16222778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 37097374 - 37097440
Alignment:
Q  167 ttcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||||| ||||| |||| |||||||||||||| ||||||||| | | ||||||||||||||||||    
T  37097374 ttcaaatgttactaaattttatcagtaacatttttcttgatttagttacaattttcaagtgttacta 37097440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 897535 - 897454
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttactat 234  Q
    ||||||||||||| ||||| || ||||| ||||||| || |||||||| ||| ||||| ||| ||||||||| ||| |||||    
T  897535 ttacctaacaattgttcaattgttactaaatttaattaggaacatttttcttcatttagtaacaattttcaactgtaactat 897454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 3399702 - 3399645
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgattta 210  Q
    ||||||||||||| |||||||| ||||| ||||||| ||||||||||| | |||||||    
T  3399702 ttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcatgattta 3399645  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 12190032 - 12189975
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgattta 210  Q
    ||||||||||||| |||||||| ||||| ||||||| ||||| ||||| |||||||||    
T  12190032 ttacctaacaattgttcaaatgttactaaatttaattagtaatatttttcttgattta 12189975  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 15214407 - 15214327
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaagtgttacta 233  Q
    ||||| ||||||| |||||||  ||||| ||||||| ||||| ||||| ||||||||| |   ||||||||||||||||||    
T  15214407 ttacccaacaattgttcaaatattactaaatttaattagtaaaatttttcttgatttagttgcaattttcaagtgttacta 15214327  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 1844032 - 1843985
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacatttt 200  Q
    ||||||||||||| |||||||| ||||| ||| |||||||||||||||    
T  1844032 ttacctaacaattgttcaaatgttactaaattcaatcagtaacatttt 1843985  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 13208692 - 13208621
Alignment:
Q  153 ttacctaacaattattcaaatgatactagatttaatcagtaacattttacttgatttaataataattttcaa 224  Q
    ||||||||||||  ||||| || ||||| ||||||| ||||||||||| ||| ||||||| | |||||||||    
T  13208692 ttacctaacaatggttcaagtggtactaaatttaattagtaacatttttcttaatttaattacaattttcaa 13208621  T

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Target: scaffold0576 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 6935 - 6699
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaatt-----ataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||||||||||||   |||||| |||| ||     |||| ||| |||||  | |||||||    
T  6935 acactttttacaactcctcaaaaattataaatgtaacacttttttattgttacaagtgatacaaaaagttttacaataaggtaccatttg-caacacttt 6837  T
Q  99 ttgaatgttacagaaa-tacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    |||| ||||||||| | ||| ||||||||||| ||||| | ||||||||| |  |   ||||||||||||| ||||| || | ||| ||||||| |||||    
T  6836 ttgattgttacagatagtactataaaatgtaactaaaa-cattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaa 6738  T
Q  195 cattttacttgatttaataataattttcaagtgttacta 233  Q
    |||||| ||||||||| | | |||||| |||||||||||    
T  6737 catttttcttgatttagttacaatttttaagtgttacta 6699  T

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Target: scaffold0069 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 40562 - 40791
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaa-----attataatgtaacattttacgacacttt 98  Q
    |||| |||||||||||||| |||||||||||||||| | | ||| |||||||||  |||||| ||||     |  |||||||||||||| | ||||||||    
T  40562 acactttttacaacttctcaaaaattataaatgtaaaactttttcattgttactagtgatacaaaaagtgttacgataatgtaacatttga-gacacttt 40660  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||||||| ||||| ||||||||||| ||||| || |||||||| | ||   ||| ||||||||| ||| | || | | | ||||||| |||||    
T  40661 ttaattgttacagataatactataaaatgtaactaaaa-ctctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaa 40759  T
Q  195 cattttacttgatttaataataattttcaagt 226  Q
    || ||| ||||||||| | | |||||||||||    
T  40760 caattttcttgatttagttacaattttcaagt 40791  T

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Target: scaffold0684 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 611 - 843
Alignment:
Q  4 acacattttacaacttctcgaaaattataaatgtaacattcttttattgttactgatgatactaaaaat-----tataatgtaacattttacgacacttt 98  Q
    |||| |||||||||| ||| |||||||||||||||||| | ||| |||||||||  |||||| |||| |      ||||||||||| ||| |||||||||    
T  611 acactttttacaactactcaaaaattataaatgtaacactttttcattgttactagtgatacaaaaagtgttccaataatgtaaca-tttgcgacacttt 709  T
Q  99 ttgaatgttacaga-aatacaataaaatgtaattaaaatctttttagtaataggg---ttacctaacaattattcaaatgatactagatttaatcagtaa 194  Q
    || | ||||| ||| ||||| ||||||||||| ||||| || |||||||| | ||   ||| ||||||||| ||| | || | | | ||||||| |||||    
T  710 ttaattgttatagataatactataaaatgtaactaaaa-ctctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaa 808  T
Q  195 cattttacttgatttaataataattttcaagtgtt 229  Q
    || ||| ||||||||| | | ||||||||||||||    
T  809 caattttcttgatttagttacaattttcaagtgtt 843  T

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