View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_low_19 (Length: 242)
Name: NF5588_low_19
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 47265489 - 47265704
Alignment:
| Q |
19 |
aaacgtgtcgtgttgggtgaacttcccaattcaacaaccaatctctctgctcctcaaactctgccaactgcgtccgataagaccaatagcattggtgaag |
118 |
Q |
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| T |
47265489 |
aaacgtgtcgtgttgggtgaacttcccaattcaacaaccaatctcactgttcctcaaactctgccaactgcgtccgagaagaccaatagcattggtgaag |
47265588 |
T |
|
| Q |
119 |
aatcaactacccatgaaaagtttgatgctcctgttgtttccagtgcttataactatcttcgatccatcgaggtaatcttatgggtctttacacactattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47265589 |
aatcaactacccatgaaaagtttgatgctcctgttgtttccagtgcttataactatcttcgatccatcgaggtaatcttatgggtctttacacactattt |
47265688 |
T |
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| Q |
219 |
caaaattgtatatata |
234 |
Q |
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|||||||||||||||| |
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| T |
47265689 |
caaaattgtatatata |
47265704 |
T |
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