View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5588_low_2 (Length: 453)

Name: NF5588_low_2
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5588_low_2
NF5588_low_2
[»] chr3 (6 HSPs)
chr3 (300-439)||(39563837-39563976)
chr3 (300-439)||(22626638-22626778)
chr3 (300-439)||(11138896-11139035)
chr3 (307-439)||(13979273-13979405)
chr3 (198-303)||(25338558-25338663)
chr3 (300-439)||(35366156-35366295)
[»] scaffold0063 (1 HSPs)
scaffold0063 (300-439)||(7319-7458)
[»] chr7 (21 HSPs)
chr7 (300-439)||(6966927-6967066)
chr7 (300-439)||(17863421-17863560)
chr7 (300-439)||(17866680-17866819)
chr7 (300-439)||(33312774-33312913)
chr7 (300-435)||(36843268-36843403)
chr7 (300-437)||(23107767-23107904)
chr7 (300-439)||(294644-294783)
chr7 (300-439)||(23759936-23760074)
chr7 (300-439)||(46846639-46846778)
chr7 (300-436)||(11279272-11279407)
chr7 (300-439)||(24783185-24783327)
chr7 (307-424)||(36222645-36222761)
chr7 (300-437)||(9765572-9765709)
chr7 (214-295)||(26620526-26620607)
chr7 (306-439)||(3862225-3862362)
chr7 (192-295)||(26618562-26618665)
chr7 (353-439)||(23313587-23313673)
chr7 (173-295)||(26607996-26608117)
chr7 (308-415)||(2719331-2719438)
chr7 (379-413)||(27796693-27796727)
chr7 (257-303)||(8248670-8248716)
[»] chr6 (19 HSPs)
chr6 (300-439)||(14790398-14790537)
chr6 (300-439)||(14795426-14795565)
chr6 (300-439)||(32704581-32704720)
chr6 (300-439)||(22221503-22221642)
chr6 (300-439)||(22247338-22247477)
chr6 (300-439)||(13017517-13017655)
chr6 (300-439)||(20527490-20527628)
chr6 (300-425)||(32427146-32427271)
chr6 (300-439)||(16883456-16883594)
chr6 (300-438)||(12983706-12983844)
chr6 (300-435)||(1838254-1838389)
chr6 (300-435)||(19664995-19665129)
chr6 (300-439)||(12980818-12980957)
chr6 (335-435)||(15538036-15538136)
chr6 (192-295)||(1943154-1943257)
chr6 (301-437)||(7769721-7769860)
chr6 (387-435)||(15534923-15534971)
chr6 (168-295)||(24631674-24631797)
chr6 (300-343)||(15534869-15534912)
[»] chr4 (14 HSPs)
chr4 (300-439)||(647530-647669)
chr4 (300-439)||(650802-650941)
chr4 (300-437)||(12171762-12171899)
chr4 (308-435)||(26063024-26063151)
chr4 (300-439)||(26060367-26060506)
chr4 (173-291)||(37744509-37744627)
chr4 (193-300)||(24558451-24558557)
chr4 (214-295)||(37750413-37750494)
chr4 (306-412)||(2541670-2541776)
chr4 (16-118)||(24558665-24558768)
chr4 (38-102)||(48465685-48465750)
chr4 (49-120)||(21318106-21318177)
chr4 (49-104)||(21317880-21317935)
chr4 (49-104)||(21317993-21318048)
[»] chr2 (15 HSPs)
chr2 (300-439)||(40017757-40017895)
chr2 (300-439)||(16294679-16294817)
chr2 (300-439)||(23673671-23673810)
chr2 (300-439)||(31626329-31626468)
chr2 (300-439)||(31528169-31528307)
chr2 (302-437)||(13709852-13709987)
chr2 (300-439)||(32576013-32576152)
chr2 (300-439)||(36326702-36326845)
chr2 (173-303)||(24479712-24479842)
chr2 (214-295)||(7703040-7703121)
chr2 (214-295)||(27150671-27150752)
chr2 (49-128)||(31481152-31481231)
chr2 (260-305)||(40016936-40016981)
chr2 (306-367)||(8426783-8426844)
chr2 (50-86)||(32266398-32266434)
[»] chr1 (19 HSPs)
chr1 (300-439)||(13493042-13493181)
chr1 (300-439)||(27282434-27282573)
chr1 (300-439)||(32506181-32506320)
chr1 (300-439)||(13495767-13495906)
chr1 (300-439)||(23990415-23990554)
chr1 (300-439)||(39546022-39546161)
chr1 (300-438)||(34066124-34066262)
chr1 (300-439)||(22104698-22104835)
chr1 (300-435)||(1936407-1936541)
chr1 (300-439)||(22453462-22453601)
chr1 (307-439)||(21153042-21153174)
chr1 (300-439)||(22456818-22456956)
chr1 (307-439)||(15297119-15297251)
chr1 (300-437)||(16190507-16190637)
chr1 (214-295)||(39367558-39367639)
chr1 (214-295)||(18308794-18308875)
chr1 (55-112)||(17113364-17113421)
chr1 (49-115)||(28637778-28637844)
chr1 (191-292)||(17113504-17113602)
[»] chr5 (12 HSPs)
chr5 (300-439)||(26712669-26712811)
chr5 (300-439)||(26982407-26982549)
chr5 (300-437)||(14616757-14616894)
chr5 (300-439)||(33574868-33575007)
chr5 (300-439)||(34405628-34405767)
chr5 (300-439)||(15532528-15532666)
chr5 (300-439)||(15542710-15542848)
chr5 (300-435)||(22159524-22159659)
chr5 (300-439)||(7650268-7650416)
chr5 (306-417)||(11989166-11989277)
chr5 (48-102)||(42076474-42076528)
chr5 (239-295)||(31571503-31571560)
[»] scaffold0500 (1 HSPs)
scaffold0500 (300-439)||(2471-2610)
[»] scaffold0440 (1 HSPs)
scaffold0440 (300-439)||(9642-9781)
[»] scaffold0352 (1 HSPs)
scaffold0352 (300-439)||(2930-3069)
[»] scaffold0264 (1 HSPs)
scaffold0264 (300-439)||(24510-24649)
[»] chr8 (8 HSPs)
chr8 (300-439)||(13096801-13096940)
chr8 (300-439)||(44008081-44008219)
chr8 (300-439)||(12575627-12575765)
chr8 (173-303)||(17633877-17634007)
chr8 (300-363)||(41779137-41779200)
chr8 (214-295)||(6223927-6224008)
chr8 (49-127)||(5001101-5001179)
chr8 (387-439)||(41779068-41779120)
[»] scaffold0665 (1 HSPs)
scaffold0665 (300-409)||(1-110)
[»] scaffold0567 (1 HSPs)
scaffold0567 (300-439)||(6137-6276)
[»] scaffold0002 (1 HSPs)
scaffold0002 (169-301)||(445692-445824)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 39563976 - 39563837
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  39563976 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaatacctccaacggtttcgaattca 39563877  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39563876 cttaagagattaaggggttgtcacttgcggggagaattct 39563837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 22626778 - 22626638
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagata-gatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattc 398  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||| |||||| ||||||| ||||||||||||    
T  22626778 taataggtttaacctaagtaatcaagctagagataagatcattattaggttatgatatagggattaacgttcgtttaatacctccaatggtttcgaattc 22626679  T
Q  399 acttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22626678 acttaagagattaaggggttgtcacttgcggggagaattct 22626638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 11139035 - 11138896
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||||| ||||| | |||||||||||||    
T  11139035 taataggtttaacctcagtaatcaagctagagatagatcattattaggttatgatatagggattaacgttcgtttaatacctcctatggtttcgaattca 11138936  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  11138935 cttaagagattaaggagttgtcacttgcggggagaattct 11138896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 307 - 439
Target Start/End: Original strand, 13979273 - 13979405
Alignment:
Q  307 tttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaaga 406  Q
    |||||| |||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||| ||||||||||||||||||    
T  13979273 tttaacttaagtaatcaagttggagatagatcattattaggttatgacatagggattaacgttcttttaatacctcgaacgatttcgaattcacttaaga 13979372  T
Q  407 gattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||| |||||||||||||||||||||||||    
T  13979373 gattaagaggttgtcacttgcggggagaattct 13979405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 25338663 - 25338558
Alignment:
Q  198 tgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaaccaaattc 297  Q
    ||||||||||  ||| |||||||||||| |||||| |||| ||||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||| |    
T  25338663 tgaagcaacaaaaatcttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaagtaaaagtaaattgtaggtataaatgattgaaccaaatcc 25338564  T
Q  298 aataat 303  Q
    ||||||    
T  25338563 aataat 25338558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 35366156 - 35366295
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||| ||| ||||||||||  |||||||||  |||||  |||||||||||  || ||||  |||||||  || | |||||||    
T  35366156 taataggtttaacctaagtaattaagttagagatagaaaattattaggctatgactcatggattaacggactgttaaaacctccaagagtcttgaattca 35366255  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||| |||||||| |||| |||| ||||    
T  35366256 cttaagagattaagggattgtcactcgcggagagagttct 35366295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 7458 - 7319
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  7458 taataggtttaacctaagtaataaagctagagatagatcattattaggttatgacatagggattaacgttcttttaatacctccaacggtttcgaattca 7359  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7358 cttaagagattaaggggttgtcacttgcggggagaattct 7319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 6966927 - 6967066
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  6966927 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacggtttcgaattca 6967026  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  6967027 cttaagagattaaggggttgtcacatgcggggagaattct 6967066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 17863560 - 17863421
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  17863560 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacggtttcgaattca 17863461  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17863460 cttaagagattaaggggttgtcacatgcggggagaattct 17863421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 17866819 - 17866680
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  17866819 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacggtttcgaattca 17866720  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17866719 cttaagagattaaggggttgtcacatgcggggagaattct 17866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 33312774 - 33312913
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  33312774 taatatgtttaacctaagtaatcaagctagagatagatcattattaggttatgacatatggattaacgttcttttaatacctccgccggtttcgaattca 33312873  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
     |||||||||||||||||||||||||||||||||||||||    
T  33312874 tttaagagattaaggggttgtcacttgcggggagaattct 33312913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 300 - 435
Target Start/End: Complemental strand, 36843403 - 36843268
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||  ||||||| |||||||||||||    
T  36843403 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttctgttaaaacctccaatggtttcgaattca 36843304  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaa 435  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36843303 cttaagagattaaggggttgttacttgcggggagaa 36843268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 23107767 - 23107904
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||  |||||||||||    
T  23107767 taataggtttaacctaagtaatcaagttagagatagatcattattaggttatgacatagggattaacgttcttttaatacctcaaacaatttcgaattca 23107866  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaatt 437  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23107867 cttaagagattaaggggttgtcacttgcggggagaatt 23107904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 294644 - 294783
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||  | |||||| ||||||||||||    
T  294644 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttttgttaaaacatccaacagtttcgaattca 294743  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  294744 cttaagagattaaggggttgtcacttatggggagaattct 294783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 23760074 - 23759936
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| || ||| ||||||| ||||| |||||||    
T  23760074 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgatatagggattaacgttcgtt-aatacctccaatggttttgaattca 23759976  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23759975 cttaagagattaaggggttgtcacttgcggggagaattct 23759936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 46846778 - 46846639
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||| ||||||||  ||||||||| |||||||||||    
T  46846778 taataggtttaacctaagtaatcaagttagagatagattattattaggttatgacatagggattaacgatcttttaaaacctccaacgttttcgaattca 46846679  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
     |||||||||||||||||||||||||||||||||||||||    
T  46846678 gttaagagattaaggggttgtcacttgcggggagaattct 46846639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 300 - 436
Target Start/End: Original strand, 11279272 - 11279407
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||  ||||| ||||||||||||||  |||||    
T  11279272 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagagattaacgttc-attaatacctccaacggtttcagattca 11279370  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaat 436  Q
    |||||||||||||||||||||||||||||||||||||    
T  11279371 cttaagagattaaggggttgtcacttgcggggagaat 11279407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 24783185 - 24783327
Alignment:
Q  300 taataagtttaacctaagtaat---caagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaat 396  Q
    ||||||||||||||||||||||   ||||||||||||| ||||||||||||| |||||||| ||||||||||||| ||||   |||||||||||||||||    
T  24783185 taataagtttaacctaagtaataatcaagctagagatatatcattattaggttatgacatagggattaacgttctgttaaaatctccaacggtttcgaat 24783284  T
Q  397 tcacttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  24783285 tcacttaagagattaaggggttgtcacttgcggagagaattct 24783327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 307 - 424
Target Start/End: Complemental strand, 36222761 - 36222645
Alignment:
Q  307 tttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaaga 406  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||| || ||| | ||||||||||||||||||||||||||    
T  36222761 tttaacctaagtaatcaagttagagatagatcattattaggttatgacatagagattaacgttc-ttaaatacttccaacggtttcgaattcacttaaga 36222663  T
Q  407 gattaaggggttgtcact 424  Q
    ||||||||||||||||||    
T  36222662 gattaaggggttgtcact 36222645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 9765572 - 9765709
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||| ||| ||| | ||||  |||| || |||||||||||||    
T  9765572 taataagtttaacttaagtaatcaagctagagatagatgattattaggttatgacataaggactaatgttttgttaaaacctctaatggtttcgaattca 9765671  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaatt 437  Q
    ||||||||||||||||  | | |||||| |||||||||    
T  9765672 cttaagagattaagggtattttacttgcagggagaatt 9765709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 26620607 - 26620526
Alignment:
Q  214 ttctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaaccaaat 295  Q
    |||||||||||| ||||||||||  |||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  26620607 ttctagctgcaagtatttagaaggaatgtgagagcaaaaacaaaatcaaagtaaatttgaggtataaatgattgaaccaaat 26620526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 439
Target Start/End: Complemental strand, 3862362 - 3862225
Alignment:
Q  306 gtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaag 405  Q
    |||||||||||||||| ||||||||||||||  |||||||||| |||| ||| ||||||| |  |  ||||  | |||||| |||| |||||||||||||    
T  3862362 gtttaacctaagtaattaagctagagatagaaaattattaggttatgatatagggattaaaggacggttaaaacttccaacagttttgaattcacttaag 3862263  T
Q  406 a----gattaaggggttgtcacttgcggggagaattct 439  Q
    |     ||||||||||||||||||||||||||||||||    
T  3862262 acattaattaaggggttgtcacttgcggggagaattct 3862225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 26618665 - 26618562
Alignment:
Q  192 ttcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaacc 291  Q
    |||||||||| |||||  | | |||||||||||| ||||||||||  |||||||| |||||| |||||||||||||||| ||||||||||||| |||||     
T  26618665 ttcacttgaaacaacaaaagtcttctagctgcaagtatttagaaggaatgtgagagcaaaaacaaaataaaagtaaatttgaggtataaatgaatgaact 26618566  T
Q  292 aaat 295  Q
    ||||    
T  26618565 aaat 26618562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 439
Target Start/End: Complemental strand, 23313673 - 23313587
Alignment:
Q  353 acatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||| || |||||||||| ||||  ||||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  23313673 acataggggttaacgttctgttaaaacctccaacgattttgaattcacttaagagattaaggggtttccacttgcggggagaattct 23313587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 295
Target Start/End: Complemental strand, 26608117 - 26607996
Alignment:
Q  173 caacaccatgtttaattccttcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattag 272  Q
    ||||||||| ||| ||  ||||| ||||| |||||  | | |||||||||||| ||| ||||||  |||||||| |||||| ||||||||||||||||      
T  26608117 caacaccatctttcatagcttcatttgaaacaacaaaagtcttctagctgcaagtatgtagaaggaatgtgagagcaaaaacaaaataaaagtaaatt-t 26608019  T
Q  273 aggtataaatgattgaaccaaat 295  Q
    | |||||||||||||||||||||    
T  26608018 acgtataaatgattgaaccaaat 26607996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 415
Target Start/End: Original strand, 2719331 - 2719438
Alignment:
Q  308 ttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaagag 407  Q
    ||||| ||| |||| ||||||||||||||  ||| ||| || ||||  ||| |||||||| ||| | ||  ||||||||||||| |||||||||||||||    
T  2719331 ttaacttaattaattaagctagagatagacaattgttaagttatgatttatagattaacgatctataaaaacctccaacggttttgaattcacttaagag 2719430  T
Q  408 attaaggg 415  Q
    ||||||||    
T  2719431 attaaggg 2719438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 27796693 - 27796727
Alignment:
Q  379 cctccaacggtttcgaattcacttaagagattaag 413  Q
    |||||||||||||||||||||||||||||||||||    
T  27796693 cctccaacggtttcgaattcacttaagagattaag 27796727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 8248670 - 8248716
Alignment:
Q  257 aataaaagtaaattagaggtataaatgattgaaccaaattcaataat 303  Q
    |||||||||||||| ||||||||| |||||||| ||||| |||||||    
T  8248670 aataaaagtaaatttgaggtataagtgattgaaacaaatccaataat 8248716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 14790398 - 14790537
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  14790398 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacggtttcgaattca 14790497  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  14790498 cttaagagattaaggggttgtcacatgcggggagaattct 14790537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 14795426 - 14795565
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  14795426 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacggtttcgaattca 14795525  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  14795526 cttaagagattaaggggttgtcacatgcggggagaattct 14795565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 32704720 - 32704581
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  32704720 taataagtttaacctaagtaatcaagatagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacggtttcgaattca 32704621  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  32704620 cttaagagattaaggggttgtcacatgcggggagaattct 32704581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 22221503 - 22221642
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||  |||||| |||| || |||||||||||||    
T  22221503 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgatatatggattaacgtttgtttaattcctctaatggtttcgaattca 22221602  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  22221603 cttgagagattaaggggttgtcacttgcggggagaattct 22221642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 22247338 - 22247477
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||  |||||| |||| || |||||||||||||    
T  22247338 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgatatatggattaacgtttgtttaattcctctaatggtttcgaattca 22247437  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  22247438 cttgagagattaaggggttgtcacttgcggggagaattct 22247477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 13017655 - 13017517
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| |||| ||| |||||||||||| || ||| ||||||| |||||||||||||    
T  13017655 taataggtttaacctaagtaatcaagttagagatagatcattattaggttatgatatagggattaacgttcgtt-aatacctccaatggtttcgaattca 13017557  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13017556 cttaagagattaaggggttgtcacttgcggggagaattct 13017517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 20527628 - 20527490
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||  |||||||||||||| ||||||    
T  20527628 taataagtttaacctaagtaatcaagctagagatagatcattattagattatgacatagggattaacgttctgttaaaacctccaacggtttcaaattca 20527529  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  20527528 cttaagagattaa-gggttgttacttgcggggagaattct 20527490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 300 - 425
Target Start/End: Original strand, 32427146 - 32427271
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| |||| ||||| ||||||||||||| |||||||    
T  32427146 taataagtttaacctaagtaatcaatctagagatagatcattattatgttatgacatagggattaacattctgttaatacctccaacggttttgaattca 32427245  T
Q  400 cttaagagattaaggggttgtcactt 425  Q
    ||||||||||||||||||||||||||    
T  32427246 cttaagagattaaggggttgtcactt 32427271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 16883456 - 16883594
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||| ||||  ||||||||||||| |||||||    
T  16883456 taataagtttaacctaagtaatcaagctagagatagatcattattaggtgatg-catagggattaatgttctgttaaaacctccaacggttttgaattca 16883554  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    | |||||||||||||||||| |||||| ||||||||||||    
T  16883555 cataagagattaaggggttgccacttgtggggagaattct 16883594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 300 - 438
Target Start/End: Complemental strand, 12983844 - 12983706
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||| ||||||||||||||  |||||||||| |||||| |||||||||||  || ||||  |||||||||||||||||||||    
T  12983844 taatatgtttaacctaagtaattaagctagagatagaaaattattaggttatgacacatggattaacggactgttaaaacctccaacggtttcgaattca 12983745  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattc 438  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  12983744 cttaagagattaaggggttgtcacttgcggagagaattc 12983706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 300 - 435
Target Start/End: Original strand, 1838254 - 1838389
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||   |||||| |||||| ||||||    
T  1838254 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttatgttaaaatctccaatggtttcaaattca 1838353  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaa 435  Q
    ||||||||||||||| ||||| ||||||||||||||    
T  1838354 cttaagagattaaggagttgttacttgcggggagaa 1838389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 300 - 435
Target Start/End: Complemental strand, 19665129 - 19664995
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||| ||||   |||||| | |||||||||||    
T  19665129 taataggtttaacctaagtaatcaagatagagatagatcat-attaggttatgacatagggattaacgttctattaaaatctccaatgatttcgaattca 19665031  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaa 435  Q
    ||||||||||||||||| ||| ||||||||||||||    
T  19665030 cttaagagattaaggggatgttacttgcggggagaa 19664995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 12980957 - 12980818
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||| ||||||||||||||  | |||||||| |||||  |||||||||||  || ||||  ||||||||  |||||||||||    
T  12980957 taatatgtttaacctaagtaattaagctagagatagaaaagtattaggttatgactcatggattaacggactgttaaaacctccaacaatttcgaattca 12980858  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  12980857 cttaagagattaagcggttgtcacttgcggagagaattct 12980818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 15538036 - 15538136
Alignment:
Q  335 gatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaagagattaaggggttgtcacttgcggggaga 434  Q
    ||||||||||| || |||||||| ||||||||||||| ||||  ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  15538036 gatcattattaagttatgacatagggattaacgttctgttaaaacctccaatggtttcgaattcacttaagagattaaggtgttgttacttgcggggaga 15538135  T
Q  435 a 435  Q
    |    
T  15538136 a 15538136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 1943154 - 1943257
Alignment:
Q  192 ttcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaacc 291  Q
    |||||||| |||||||   || ||||||| |||| ||||||||||  ||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||    
T  1943154 ttcacttggagcaacaaatatcttctagccgcaagtatttagaaggaatgtgagaacacaaacaaaataaaagtaaatttgaggtataagtgattgaacc 1943253  T
Q  292 aaat 295  Q
    ||||    
T  1943254 aaat 1943257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 437
Target Start/End: Complemental strand, 7769860 - 7769721
Alignment:
Q  301 aataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaat---t 397  Q
    |||| |||||||||||||||| ||| ||||||||||  |||||||||| ||||  || |||||||||  || ||||  ||||||| | ||||||||   |    
T  7769860 aatatgtttaacctaagtaattaagttagagatagacaattattaggttatgatttagggattaacggactgttaaaacctccaaagatttcgaattcat 7769761  T
Q  398 cacttaagagattaaggggttgtcacttgcggggagaatt 437  Q
    |||| ||||||||||||||||  ||||||| | |||||||    
T  7769760 cactgaagagattaaggggttagcacttgcagagagaatt 7769721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 15534923 - 15534971
Alignment:
Q  387 ggtttcgaattcacttaagagattaaggggttgtcacttgcggggagaa 435  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15534923 ggtttcgaattcacttaagagattaagaggttgttacttgcggggagaa 15534971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 24631797 - 24631674
Alignment:
Q  168 actttcaacaccatgtttaattccttcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaa 267  Q
    |||| |||||||||||||  |  |||||||||| ||||||  | | |||||||||||| ||||||  ||  ||||||| ||||| |  || |||||||||    
T  24631797 acttgcaacaccatgtttcgtagcttcacttgaggcaacaaaagtcttctagctgcaagtattta--aggaatgtgaggacaaaca--aattaaaagtaa 24631702  T
Q  268 attagaggtataaatgattgaaccaaat 295  Q
    ||| ||||||||||||||||||||||||    
T  24631701 atttgaggtataaatgattgaaccaaat 24631674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 15534869 - 15534912
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattat 343  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||    
T  15534869 taataggtttaacataagtaatcaagctagtgatagatcattat 15534912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 647669 - 647530
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  647669 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacggtttcgaattca 647570  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  647569 cttaagagattaaggggttgtcacatgcggggagaattct 647530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 650941 - 650802
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  650941 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacggtttcgaattca 650842  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  650841 cttaagagattaaggggttgtcacatgcggggagaattct 650802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 12171762 - 12171899
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||||| ||||||| |||||||||||||    
T  12171762 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgatatagggattaacgttcgtttaatacctccaatggtttcgaattca 12171861  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaatt 437  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12171862 cttaagagattaaggggttgtcacttgcggggagaatt 12171899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 308 - 435
Target Start/End: Complemental strand, 26063151 - 26063024
Alignment:
Q  308 ttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaagag 407  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||  ||||||| |||||||||||||||||||||    
T  26063151 ttaacctaagtaatcaagctagagattgatcattattaggttatgacatatggataaacgttctgttaaaacctccaatggtttcgaattcacttaagag 26063052  T
Q  408 attaaggggttgtcacttgcggggagaa 435  Q
    ||||||||||||| ||||||||||||||    
T  26063051 attaaggggttgttacttgcggggagaa 26063024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 26060367 - 26060506
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||  |||||||||||||||||||||    
T  26060367 taatatgtttaacttaagtaatcaagctagagatagaccattattaggttatgacatagggattaacgttctattaaaacctccaacggtttcgaattca 26060466  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||| ||||||||||||| | |||| |||||||||||    
T  26060467 cttaagacattaaggggttgttatttgcagggagaattct 26060506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 37744627 - 37744509
Alignment:
Q  173 caacaccatgtttaattccttcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattag 272  Q
    ||||||||| ||| ||  |||| |||||| |||||  | | |||||| ||||| ||||||||||  ||||||||||||||| |||||||||||||||| |    
T  37744627 caacaccatctttcatagcttctcttgaaacaacaaaagtcttctaggtgcaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttg 37744528  T
Q  273 aggtataaatgattgaacc 291  Q
    |||||||||||||||||||    
T  37744527 aggtataaatgattgaacc 37744509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 300
Target Start/End: Complemental strand, 24558557 - 24558451
Alignment:
Q  193 tcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaacca 292  Q
    |||||||||||||||  ||| || |||||| || |||| |||||  ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||    
T  24558557 tcacttgaagcaacaaaaatcttttagctgtaagtatt-agaaggaatgtgagtacaaaaacaaaataaaagtaaatttgaggtataaatgattgaacca 24558459  T
Q  293 aattcaat 300  Q
    ||| ||||    
T  24558458 aatccaat 24558451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 37750494 - 37750413
Alignment:
Q  214 ttctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaaccaaat 295  Q
    |||||| ||||| ||||||||||  ||||||||||||||| |||||||||||||||| ||||||||||| |||||| |||||    
T  37750494 ttctagttgcaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataattgaatcaaat 37750413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 412
Target Start/End: Original strand, 2541670 - 2541776
Alignment:
Q  306 gtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaag 405  Q
    |||||||||||||||| ||||||||||||||  |||||||||| |||| ||| |||||||||  || ||||  ||| ||| ||||| ||||||| |||||    
T  2541670 gtttaacctaagtaattaagctagagatagacaattattaggttatgatatagggattaacggactgttaaaaccttcaatggttttgaattcatttaag 2541769  T
Q  406 agattaa 412  Q
    |||||||    
T  2541770 agattaa 2541776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 24558768 - 24558665
Alignment:
Q  16 atcacaatattacatttcaatcaacatttatat-aacaattttggataacaagacaatgaaataagatattctaaataaatctactaatctctttttcca 114  Q
    ||||||| | |||||||  ||||||||||  || || |||||||||||||||||||||||||| |||||| |||| |||||||| |||||  ||||||||    
T  24558768 atcacaaaactacatttggatcaacattttgatcaagaattttggataacaagacaatgaaattagatatcctaactaaatctaataatcattttttcca 24558669  T
Q  115 ccaa 118  Q
    ||||    
T  24558668 ccaa 24558665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 48465685 - 48465750
Alignment:
Q  38 aacatttatat-aacaattttggataacaagacaatgaaataagatattctaaataaatctactaa 102  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||| |||| ||||||||||||    
T  48465685 aacatttatatcaacaattttggataacaagacaaagatataagatatcctaactaaatctactaa 48465750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 21318106 - 21318177
Alignment:
Q  49 aacaattttggataacaagacaatgaaataagatattctaaataaatctactaatctctttttccaccaaaa 120  Q
    |||||||| | ||||||||||||| ||||||||||| |||| |||| ||||||||| ||| |||||||||||    
T  21318106 aacaatttcgaataacaagacaataaaataagatatcctaactaaacctactaatcacttattccaccaaaa 21318177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 21317880 - 21317935
Alignment:
Q  49 aacaattttggataacaagacaatgaaataagatattctaaataaatctactaatc 104  Q
    |||||||| | ||||||||||||||||||||||||| |||| |||| |||||||||    
T  21317880 aacaatttcgaataacaagacaatgaaataagatatcctaactaaacctactaatc 21317935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 21317993 - 21318048
Alignment:
Q  49 aacaattttggataacaagacaatgaaataagatattctaaataaatctactaatc 104  Q
    |||||||| | ||||||||||||||||||||||||| |||| |||| |||||||||    
T  21317993 aacaatttcgaataacaagacaatgaaataagatatcctaactaaacctactaatc 21318048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 40017757 - 40017895
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  40017757 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatgaattaacgttcttttaatacctccaacagtttcgaattca 40017856  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  40017857 cttaagagaataa-gggttgtcacttgcggggagaattct 40017895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 16294679 - 16294817
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  16294679 taataggtttaacctaagtaatcaagttagagatagatcattattaggttatgacatagggattaacgttcttt-aatacctccaacggtttcgaattca 16294777  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16294778 cttaagagattaaggggttgtcacttgcggggagaattct 16294817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 23673810 - 23673671
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||  |||||||| ||||||||||||    
T  23673810 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttctgttaaaacctccaactgtttcgaattca 23673711  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  23673710 cttaagagattaaggggttgtcacatgcggggagaattct 23673671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 31626329 - 31626468
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||||||| |||||||||||    
T  31626329 taataggtttaacctaagtaatcaagctagagatagatcattattaggttataacataaggattaacgttcttttaatacctccaacgatttcgaattca 31626428  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  31626429 cttaagagattaaggggttgtcacttgcagggagaattct 31626468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 31528169 - 31528307
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||  ||||| ||||||  |||||||||||||    
T  31528169 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgatatagggattaacgttc-gttaatacctccattggtttcgaattca 31528267  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31528268 cttaagagattaaggggttgtcacttgcggggagaattct 31528307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 302 - 437
Target Start/End: Original strand, 13709852 - 13709987
Alignment:
Q  302 ataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcact 401  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | ||||  ||||||||| |||||||||||||    
T  13709852 ataagtttaacccaagtaatcaagctagatatagatcattattaggttatgacatagggattaacgttttgttaaaacctccaacgatttcgaattcact 13709951  T
Q  402 taagagattaaggggttgtcacttgcggggagaatt 437  Q
     ||||||||| |||||||||||||| ||||||||||    
T  13709952 aaagagattatggggttgtcacttgaggggagaatt 13709987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 32576152 - 32576013
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||| ||||||||||| ||||||||| ||||||||| | |||||| ||||||||||||||||||| ||||||||  |||||||||||    
T  32576152 taatatgtttaacctaaataatcaagctaaagatagatctttattaggttacgacatagggattaacgttcttttaatacctccaacaatttcgaattca 32576053  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
     | |||||||||||||||||||||||| ||||||||||||    
T  32576052 gtcaagagattaaggggttgtcacttgtggggagaattct 32576013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 36326702 - 36326845
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttc----gaa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||| ||||| |||||||| |||||     ||    
T  36326702 taataagtttaacctaagtaatcaagctagagatagatcattattaggctatgacacagggattaacgttctgttaatacctccaacagtttcaaattaa 36326801  T
Q  396 ttcacttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||| |||||||||||| |||||||||||    
T  36326802 ttcacttaagagattaaggagttgtcacttgcagggagaattct 36326845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 303
Target Start/End: Original strand, 24479712 - 24479842
Alignment:
Q  173 caacaccatgtttaattccttcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattag 272  Q
    ||||||||| ||| ||  |||||||||||||||||  | | |||||||| ||| |||||||| |  || ||| |||||||||||| |||||||||||| |    
T  24479712 caacaccatcttttatagcttcacttgaagcaacaaaagtcttctagctacaagtatttagatggaatatgataacaaaaataaagtaaaagtaaatttg 24479811  T
Q  273 aggtataaatgattgaaccaaattcaataat 303  Q
    ||||||||||||||||| ||||| |||||||    
T  24479812 aggtataaatgattgaatcaaatccaataat 24479842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 7703040 - 7703121
Alignment:
Q  214 ttctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaaccaaat 295  Q
    |||||||||||| ||||||||||  | ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  7703040 ttctagctgcaagtatttagaaggaacgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataattgaaccaaat 7703121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 27150752 - 27150671
Alignment:
Q  214 ttctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaaccaaat 295  Q
    |||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||| ||| ||||||||    
T  27150752 ttctagctgcaagtatttaaaagaaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataatttaaccaaat 27150671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 31481152 - 31481231
Alignment:
Q  49 aacaattttggataacaagacaatgaaataagatattctaaataaatctactaatctctttttccaccaaaagtttcaag 128  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||  |||||||| ||||||||||||||| |||||||    
T  31481152 aacaattttgaataacaagataatgaaataagatatcctaactaaacttactaatcactttttccaccaaaattttcaag 31481231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 40016936 - 40016981
Alignment:
Q  260 aaaagtaaattagaggtataaatgattgaaccaaattcaataataa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40016936 aaaagtaaattagaggtataaatgattgaaccaaattcaataataa 40016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 8426783 - 8426844
Alignment:
Q  306 gtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacg 367  Q
    |||||||||||||||| ||||||||||||||  |||||||||| ||||  || |||||||||    
T  8426783 gtttaacctaagtaattaagctagagatagaaaattattaggttatgatttagggattaacg 8426844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 32266398 - 32266434
Alignment:
Q  50 acaattttggataacaagacaatgaaataagatattc 86  Q
    ||||||||||||||||  |||||||||||||||||||    
T  32266398 acaattttggataacattacaatgaaataagatattc 32266434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 8e-59; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 13493042 - 13493181
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||  |||||||||||||||||||||    
T  13493042 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttctgttaaaacctccaacggtttcgaattca 13493141  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13493142 cttaagagattaaggggttgtcacatgcggggagaattct 13493181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 27282573 - 27282434
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  ||||||||| ||| |||||||    
T  27282573 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacgattttgaattca 27282474  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27282473 cttaagagattaaggggttgtcacttgcggggagaattct 27282434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 32506320 - 32506181
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  32506320 taataagtttaacttaagtaatcaagctagagataggtcattattaggttatgacatagggattaacgttctgttaatacctccaacggtttcgaattca 32506221  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32506220 cttaagagattaaggggttgtcacttgcggggagaattct 32506181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 13495767 - 13495906
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||  |||  |||||||||||||||||||||    
T  13495767 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttctgctaaaacctccaacggtttcgaattca 13495866  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  13495867 cttaagagattaaggggttgtcacttgcgggtagaattct 13495906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 23990554 - 23990415
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| ||||  |||||||||||||||||||||    
T  23990554 taataagtttaacctaagtaatcaagctagagattgatcattattaggttatgacatagggattaacgttctgttaaaacctccaacggtttcgaattca 23990455  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  23990454 cttaagagtttaaggggttgtcacttgcggggagaattct 23990415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 39546022 - 39546161
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||  ||||||||| |||||||||||    
T  39546022 taataagtttaacttaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttctattaaaacctccaacgatttcgaattca 39546121  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  39546122 cttaagagattaaggggttgttacttgcggggagaattct 39546161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 300 - 438
Target Start/End: Original strand, 34066124 - 34066262
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  |||||||||||| ||||  |||||||||||||||||||||    
T  34066124 taataagtttaacctaagtaatcaagttagagatagatcattattaggttatgacatagagattaacgttctgttaaaacctccaacggtttcgaattca 34066223  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattc 438  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  34066224 cttaagagattaaggggttgtcacttgcggagagaattc 34066262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 22104835 - 22104698
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||||| ||| |||||||    
T  22104835 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttc-tttaatacctccaacgattttgaattca 22104737  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||| ||  |||||||| |||||||||||||    
T  22104736 cttaagagattaa-ggtctgtcacttacggggagaattct 22104698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 300 - 435
Target Start/End: Original strand, 1936407 - 1936541
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| |||| |||||||||  |||| ||| ||||| ||||||    
T  1936407 taataagtttaacctaagtaatcatgctagagatagatcattattaggttatgacatagggaataacattcttttaaaacctcaaac-gtttcaaattca 1936505  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaa 435  Q
    |||||||||||||||| |||| ||||||||||||||    
T  1936506 cttaagagattaagggattgttacttgcggggagaa 1936541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 22453601 - 22453462
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||| ||||||||||||||  |||||||||| |||||  |||||||||||  || ||||  |||||||| ||||||||||||    
T  22453601 taataggtttaacctaagtaattaagctagagatagaaaattattaggttatgactcatggattaacggactgttaaaacctccaacagtttcgaattca 22453502  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  22453501 cttaagagattaaggggttgtcacttgcggagagaattct 22453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 307 - 439
Target Start/End: Original strand, 21153042 - 21153174
Alignment:
Q  307 tttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaaga 406  Q
    ||||||||||||||| ||||||||||||||   ||||||||| ||||  || |||||||||  || ||||  ||||||| |||||| |||||||||||||    
T  21153042 tttaacctaagtaattaagctagagatagacagttattaggttatgatttagggattaacggactattaaaacctccaaaggtttcaaattcacttaaga 21153141  T
Q  407 gattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||| |||||||||    
T  21153142 gattaaggggttgtcacttgcggagagaattct 21153174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 22456956 - 22456818
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||||||||||||||| |||| |||||||||  |||||||||| |||||  |||||||||||  || ||||  |||||||| ||||||||||||    
T  22456956 taataggtttaacctaagtaattaagcaagagatagaaaattattaggttatgactcatggattaacggactgttaaaacctccaacagtttcgaattca 22456857  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||| | |||||||||||||| |||||||||    
T  22456856 cttaagagattaa-gagttgtcacttgcggagagaattct 22456818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 307 - 439
Target Start/End: Original strand, 15297119 - 15297251
Alignment:
Q  307 tttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaaga 406  Q
    ||||||||||||||| ||| ||||||||||  |||||||||| |||||  |||||||||||  || ||||  |||||||| ||||| |||||||||||||    
T  15297119 tttaacctaagtaattaagttagagatagaaaattattaggttatgactcatggattaacggactgttaaaacctccaacagtttcaaattcacttaaga 15297218  T
Q  407 gattaaggggttgtcacttgcggggagaattct 439  Q
    |||| | |||||||||||||| | |||||||||    
T  15297219 gatttaagggttgtcacttgcagagagaattct 15297251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 16190637 - 16190507
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| |||||||         ||  |||||||||||||||||||||    
T  16190637 taataagtttaacctaagtaatcaagttagagatagatcaatattaggttatgacatagggattaa---------aa--cctccaacggtttcgaattca 16190549  T
Q  400 cttaagag----attaaggggttgtcacttgcggggagaatt 437  Q
    ||||||||    ||||||||||||||||| | ||||||||||    
T  16190548 cttaagagattaattaaggggttgtcactcgtggggagaatt 16190507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 39367639 - 39367558
Alignment:
Q  214 ttctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaaccaaat 295  Q
    |||||||| ||| ||||||||||  ||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||    
T  39367639 ttctagctacaagtatttagaaggaatgtgagaacaaaaacaaaataaaagtaaatttgaggtataaataattgtaccaaat 39367558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 18308794 - 18308875
Alignment:
Q  214 ttctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaaccaaat 295  Q
    |||||||||||| |||||||||   |||||||| ||||||  |||||||| |||||| ||||||||||| ||||||||||||    
T  18308794 ttctagctgcaagtatttagaatgaatgtgagatcaaaaactaaataaaaataaatttgaggtataaattattgaaccaaat 18308875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 17113364 - 17113421
Alignment:
Q  55 tttggataacaagacaatgaaataagatattctaaataaatctactaatctctttttc 112  Q
    |||||||||||||||||||||||||||||| |||| |||| ||| ||||| |||||||    
T  17113364 tttggataacaagacaatgaaataagatatcctaactaaacctagtaatcactttttc 17113421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 28637778 - 28637844
Alignment:
Q  49 aacaattttggataacaagacaatgaaataagatattctaaataaatctactaatctctttttccac 115  Q
    |||||||||||||||||||||||| ||||| ||| | |||| ||||  |||||||| ||||||||||    
T  28637778 aacaattttggataacaagacaataaaataggatttcctaactaaacatactaatcactttttccac 28637844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 17113504 - 17113602
Alignment:
Q  191 cttcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaac 290  Q
    ||||| ||||| |||||  ||| |||||||||||| |||||| |||  |||    ||||||||  ||||||||||||||| ||||||||||| |||||||    
T  17113504 cttcatttgaatcaacaaaaatcttctagctgcaagtatttaaaaggaatga---aacaaaaaccaaataaaagtaaatttgaggtataaataattgaac 17113600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 26712811 - 26712669
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcat---tattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaat 396  Q
    ||||| |||||||||||||||||||||||||||||||||||   |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  26712811 taataggtttaacctaagtaatcaagctagagatagatcatcattattaggttatgacatagggattaacgttcttttaatacctccaacggtttcgaat 26712712  T
Q  397 tcacttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26712711 tcacttaagagattaaggggttgtcacttgcggggagaattct 26712669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 26982549 - 26982407
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcat---tattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaat 396  Q
    ||||| |||||||||||||||||||||||||||||||||||   |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  26982549 taataggtttaacctaagtaatcaagctagagatagatcatcattattaggttatgacatagggattaacgttcttttaatacctccaacggtttcgaat 26982450  T
Q  397 tcacttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26982449 tcacttaagagattaaggggttgtcacttgcggggagaattct 26982407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 14616894 - 14616757
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||  |||||||||||||||||||||    
T  14616894 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatatggattaacgttttgttaaaacctccaacggtttcgaattca 14616795  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaatt 437  Q
    || ||||||||||||| |||||||||||||||||||||    
T  14616794 ctcaagagattaagggcttgtcacttgcggggagaatt 14616757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 33574868 - 33575007
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||| |||||| ||||||| |||||||||||||    
T  33574868 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgatatagggattaacattcgtttaatacctccaatggtttcgaattca 33574967  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33574968 cttaagagattaaggggttgtcacttgcggggagaattct 33575007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 34405628 - 34405767
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||  ||||||||||||| |||||||    
T  34405628 taataagtttaacttaagtaatcaagctagagatagatcattattaggttatgagatagggattaacgttcttttaaaacctccaacggttttgaattca 34405727  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  34405728 cttaagagattaaggggttgtcacatgcgaggagaattct 34405767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 15532666 - 15532528
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| || ||| ||||||  |||||||||||||    
T  15532666 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgatatagggattaacgttcgtt-aatacctccattggtttcgaattca 15532568  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15532567 cttaagagattaaggggttgtcacttgcggggagaattct 15532528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 15542848 - 15542710
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||  ||||| ||||||  |||||||||||||    
T  15542848 taataggtttaacctaagtaatcaagctagagatagatcattattaggttatgatatagggattaacgttc-gttaatacctccattggtttcgaattca 15542750  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  15542749 cttaagagatcaaggggttgtcacttgcggggagaattct 15542710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 300 - 435
Target Start/End: Original strand, 22159524 - 22159659
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||  ||||||| |||||||||||||    
T  22159524 taataggtttaacctaagtaatcaaactagagatagatcattattaggttatgacatagggattaacgttctgttaaaacctccaatggtttcgaattca 22159623  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaa 435  Q
    ||||||||||||||||||||| ||||| ||||||||    
T  22159624 cttaagagattaaggggttgttacttgtggggagaa 22159659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 7650416 - 7650268
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcat---------gacatatggattaacgttcttttaatgcctccaacggtt 390  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| ||         |||||| |||||||| |||| ||||  |||||| || ||    
T  7650416 taataagtttaacctaaaaaatcaagctagagatagatcattattaggttatttaggttatgacatagggattaaccttctattaaaacctccagcgatt 7650317  T
Q  391 tcgaattcacttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7650316 tcgaattcactcaagagattaaggggttgtcacttgcggggagaattct 7650268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 306 - 417
Target Start/End: Complemental strand, 11989277 - 11989166
Alignment:
Q  306 gtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattcacttaag 405  Q
    |||||||||| ||||||||| ||||||||||||||||||||||  | |||||  |||||||||||| ||||  |||||||||||||||||||||||||||    
T  11989277 gtttaacctatgtaatcaagttagagatagatcattattaggttttaacatagagattaacgttctattaaaacctccaacggtttcgaattcacttaag 11989178  T
Q  406 agattaaggggt 417  Q
    ||||||||||||    
T  11989177 agattaaggggt 11989166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 42076474 - 42076528
Alignment:
Q  48 taacaattttggataacaagacaatgaaataagatattctaaataaatctactaa 102  Q
    ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  42076474 taacaattttggataacaagacaatgatataagatatcctaactaaatctactaa 42076528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 31571503 - 31571560
Alignment:
Q  239 atgtgagaacaaaaataaaataaaagtaaa-ttagaggtataaatgattgaaccaaat 295  Q
    ||||||||||||||| |||||||||||||| || | ||||||||||||||||| ||||    
T  31571503 atgtgagaacaaaaacaaaataaaagtaaatttgggggtataaatgattgaactaaat 31571560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 2471 - 2610
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  2471 taataggtttgacctaagtaatcaagctagagatagatcattattaggttatgacatagggatcaacgttcttttaatacctccaacggtttcgaattca 2570  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  2571 cttaagagatttaggggttgtcacttgcggggagaattct 2610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 9642 - 9781
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||| |||||| ||||||| |||||||||||||    
T  9642 taataggtttaacctaagtaatcaagctaaagatagatcattattaggttatgatatagggattaacgttcgtttaatacctccaatggtttcgaattca 9741  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9742 cttaagagattaaggggttgtcacttgcggggagaattct 9781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 3069 - 2930
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||| |||||||  |||| |||||||    
T  3069 taatacgtttaacctaagtaatcaagctagagatagatcattattagattatgacacaaggattaacgttcttttaatacctccaatagttttgaattca 2970  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2969 cttaagagattaaggggttgtcacttgcggggagaattct 2930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 24649 - 24510
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||  |||||| ||||||| |||||||||||||    
T  24649 taataggtttaacctaagtaatcaagctagagatatatcattattaggttatgatatagggattaacgtttatttaattcctccaatggtttcgaattca 24550  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  24549 cataagagattaaggggttgtcacttgcggggagaattct 24510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 13096801 - 13096940
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||| ||||  ||||| |||||||| ||||||    
T  13096801 taataagtttaagctaagtaatcaagctagagatagatcattattagattatgacatagggatttacgttctgttaaaacctcccacggtttcaaattca 13096900  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  13096901 cttaagacattaaggggttgtcacttgcggggagaattct 13096940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 300 - 439
Target Start/End: Original strand, 44008081 - 44008219
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||| ||||||||||||| |||||||||| |||||| | |||| | ||||||||||||||||||| ||||||||| |||| ||||||    
T  44008081 taataagtttaacctaactaatcaagctagaaatagatcattgttaggttacgacacagggattaacgttcttttaatacctccaacgatttcaaattca 44008180  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||| |||||||||| |||||||||||| |||||||||||    
T  44008181 cttatgagattaaggagttgtcacttgc-gggagaattct 44008219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 12575765 - 12575627
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||  | ||||  ||||||| |||||| ||||||    
T  12575765 taataggtttaacataagtaatcaagttagagatagatcattattaggttatgatataaggattaacgtattgttaaaacctccaatggtttctaattca 12575666  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  12575665 cttaagagattaa-gggttgttacttgcggggagaattct 12575627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 173 - 303
Target Start/End: Complemental strand, 17634007 - 17633877
Alignment:
Q  173 caacaccatgtttaattccttcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattag 272  Q
    ||||||||| ||| ||  |||||||||||||||||  ||| |||||||||||| ||||||||||  ||||||||||||||| ||| ||||||||||||      
T  17634007 caacaccatctttcataacttcacttgaagcaacaaaaatcttctagctgcaagtatttagaaggaatgtgagaacaaaaacaaagtaaaagtaaatttt 17633908  T
Q  273 aggtataaatgattgaaccaaattcaataat 303  Q
    ||||||||||||||||||||||| |||||||    
T  17633907 aggtataaatgattgaaccaaatccaataat 17633877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 41779200 - 41779137
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggatt 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  41779200 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggatt 41779137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 6223927 - 6224008
Alignment:
Q  214 ttctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaattagaggtataaatgattgaaccaaat 295  Q
    |||||||||||| ||||||||||  || || ||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  6223927 ttctagctgcaagtatttagaaggaatatgggaacaaaaacaaaataaaagtaaatttgaggtataaatgattgaaccaaat 6224008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 5001101 - 5001179
Alignment:
Q  49 aacaattttggataacaagacaatgaaataagatattctaaataaatctactaatctctttttccaccaaaagtttcaa 127  Q
    |||||||||||||||||||| ||||||||||||||   ||| |||| ||||||||| ||||||||| ||||| ||||||    
T  5001101 aacaattttggataacaagataatgaaataagataccttaactaaacctactaatcactttttccatcaaaattttcaa 5001179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 41779120 - 41779068
Alignment:
Q  387 ggtttcgaattcacttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||||||||    
T  41779120 ggttttgaattcacttaagatattaaggggttgccacttgcggggagaattct 41779068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 300 - 409
Target Start/End: Complemental strand, 110 - 1
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  110 taataagtttaacctaagtaatcaagctagagatagatcattattaggttatgacatagggattaacgttcttttaaaacctccaacggtttcgaattca 11  T
Q  400 cttaagagat 409  Q
    ||||||||||    
T  10 cttaagagat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 6276 - 6137
Alignment:
Q  300 taataagtttaacctaagtaatcaagctagagatagatcattattaggtcatgacatatggattaacgttcttttaatgcctccaacggtttcgaattca 399  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||| ||||  ||||||| | ||| |||||||    
T  6276 taataagtttaatctaagtaatcaacctagagatagatcattattaggttatgacatagggtttaacgttctgttaaaacctccaatgattttgaattca 6177  T
Q  400 cttaagagattaaggggttgtcacttgcggggagaattct 439  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  6176 cttaagagattaaggggttgccacttgcggggagaattct 6137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 445824 - 445692
Alignment:
Q  169 ctttcaacaccatgtttaattccttcacttgaagcaacaccaatattctagctgcaaatatttagaagatatgtgagaacaaaaataaaataaaagtaaa 268  Q
    ||||||| ||||| ||| ||  ||||||||||||||||| |||| |||||||||||| ||||||||||  |||| || ||||||| ||||||||||||||    
T  445824 ctttcaataccatattttatagcttcacttgaagcaacaacaatcttctagctgcaagtatttagaaggaatgtaagcacaaaaacaaaataaaagtaaa 445725  T
Q  269 ttagaggtataaatgattgaaccaaattcaata 301  Q
    || |||||||||||  ||||||||||| |||||    
T  445724 tttgaggtataaatatttgaaccaaatccaata 445692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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