View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5588_low_20 (Length: 236)
Name: NF5588_low_20
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5588_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 47492715 - 47492875
Alignment:
| Q |
22 |
cctatcacaccaacactgttttctcttctcacttttagcctttttgaagacattactaaagcatcccaagcatccatcaaaaggtaggttcgaatagata |
121 |
Q |
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| T |
47492715 |
cctatcacaccaacactgttttctcttctcacttttagcctttttgaagacattactaaagcatcccaagcatccatcaaaaggtaggttcgaatagata |
47492814 |
T |
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| Q |
122 |
catatgacaaacaaactccattatgaagtaaggcgtgacgaaaatacaagtgtggaagagg |
182 |
Q |
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| T |
47492815 |
catatgacgaacaaactccattatgaagtaaggcgtgacgaaaatacaagtgtggaagagg |
47492875 |
T |
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