View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5588_low_21 (Length: 234)

Name: NF5588_low_21
Description: NF5588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5588_low_21
NF5588_low_21
[»] chr1 (8 HSPs)
chr1 (42-144)||(10397997-10398098)
chr1 (139-212)||(10397786-10397859)
chr1 (139-211)||(10402553-10402625)
chr1 (146-211)||(10398850-10398915)
chr1 (77-144)||(10399058-10399125)
chr1 (139-175)||(10408037-10408073)
chr1 (1-30)||(10398120-10398149)
chr1 (78-131)||(10402754-10402807)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 10398098 - 10397997
Alignment:
Q  42 atgttttgtctgttaggattgttaattgggacaagttttatgtcatactaaactactttataatctttacattacactctcctttatttcatctatctct 141  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10398098 atgttttgt-tgttaggattgttaattgggtcgagttttatgtcatactaaactactttataatctctacattacactctcctttatttcatctatctct 10398000  T
Q  142 ctt 144  Q
    |||    
T  10397999 ctt 10397997  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 10397859 - 10397786
Alignment:
Q  139 tctcttagatcgggtctaaagttgatggactgaattgctagaattttcactaaacatttgcattcactctttta 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10397859 tctcatagatcgggtctaaagttgatggactgaattgctagaattttcactaaacatttgcattcactctttta 10397786  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 10402625 - 10402553
Alignment:
Q  139 tctcttagatcgggtctaaagttgatggactgaattgctagaattttcactaaacatttgcattcactctttt 211  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||    
T  10402625 tctcatagatcgggtctaaagttgatggactgaattgttagaatttttactcaacatttgcattcaccctttt 10402553  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 10398915 - 10398850
Alignment:
Q  146 gatcgggtctaaagttgatggactgaattgctagaattttcactaaacatttgcattcactctttt 211  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||    
T  10398915 gatcgggtctaaagttgatggactgaattgttagaatttttactcaacatttgcatttactctttt 10398850  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 10399125 - 10399058
Alignment:
Q  77 ttttatgtcatactaaactactttataatctttacattacactctcctttatttcatctatctctctt 144  Q
    |||||| ||||||||| |||||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  10399125 ttttatctcatactaatctactttataatcttttcattccactctcctttatttcctctatctctctt 10399058  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 10408073 - 10408037
Alignment:
Q  139 tctcttagatcgggtctaaagttgatggactgaattg 175  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10408073 tctcatagatcgggtctaaagttgatggactgaattg 10408037  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10398149 - 10398120
Alignment:
Q  1 aattgtttaaggttggatccactttgtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  10398149 aattgtttaaggttggatccactttgtgta 10398120  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 10402807 - 10402754
Alignment:
Q  78 tttatgtcatactaaactactttataatctttacattacactctcctttatttc 131  Q
    ||||| |||||||||| ||||| ||||||| | |||| ||||||||||||||||    
T  10402807 tttatctcatactaaagtacttaataatctcttcatttcactctcctttatttc 10402754  T

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